CSPI02G12770.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI02G12770.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionConjugative transfer protein TrbG
LocationChr2 : 12988676 .. 12988912 (-)
Sequence length237
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGGTGGATATGAACACATGAATTTTGTTGATGGGGTTTATAATAATCAAACACCTTGTCCCCAAAGCAAAAACTTCAGGCCGCCAGAGCCGCCGCCGCCGGCCTTCCTCAATGCGGCCGCGGTGATGCCCTACGCCGAAGGCGCGATCTATCAGGTCTACACCACGCCCGAACGGGTGACCGACATGAAAGAAATATGGGTAAAGTACAATTGCCAATGGAAATTGAACTAA

mRNA sequence

ATGTATGGTGGATATGAACACATGAATTTTGTTGATGGGGTTTATAATAATCAAACACCTTGTCCCCAAAGCAAAAACTTCAGGCCGCCAGAGCCGCCGCCGCCGGCCTTCCTCAATGCGGCCGCGGTGATGCCCTACGCCGAAGGCGCGATCTATCAGGTCTACACCACGCCCGAACGGGTGACCGACATGAAAGAAATATGGGTAAAGTACAATTGCCAATGGAAATTGAACTAA

Coding sequence (CDS)

ATGTATGGTGGATATGAACACATGAATTTTGTTGATGGGGTTTATAATAATCAAACACCTTGTCCCCAAAGCAAAAACTTCAGGCCGCCAGAGCCGCCGCCGCCGGCCTTCCTCAATGCGGCCGCGGTGATGCCCTACGCCGAAGGCGCGATCTATCAGGTCTACACCACGCCCGAACGGGTGACCGACATGAAAGAAATATGGGTAAAGTACAATTGCCAATGGAAATTGAACTAA
Homology
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BLAST of CSPI02G12770.1 vs. TrEMBL
Match: A0A160TJH4_9ZZZZ (Conjugative transfer protein TrbG OS=hydrothermal vent metagenome GN=MGWOODY_Smn1154 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.2e-06
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 1 

Query: 31 EPPPPAFLNAAAVMPYAEGAIYQVYTTPERVTDM 65
          EP PPAF+NA+A+MP+ +G IY+VYT PERVTD+
Sbjct: 54 EPTPPAFINASAIMPFVDGTIYRVYTAPERVTDI 87

The following BLAST results are available for this feature:
BLAST of CSPI02G12770.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G12770.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A160TJH4_9ZZZZ9.2e-0667.65Conjugative transfer protein TrbG OS=hydrothermal vent metagenome GN=MGWOODY_Smn... [more]
BLAST of CSPI02G12770.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G12770.1 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G12770CSPI02G12770gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G12770.1CSPI02G12770.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G12770.1.cds1CSPI02G12770.1.cds1CDS