CSPI02G12770 (gene) Wild cucumber (PI 183967)

NameCSPI02G12770
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionConjugative transfer protein TrbG
LocationChr2 : 12988676 .. 12988912 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGGTGGATATGAACACATGAATTTTGTTGATGGGGTTTATAATAATCAAACACCTTGTCCCCAAAGCAAAAACTTCAGGCCGCCAGAGCCGCCGCCGCCGGCCTTCCTCAATGCGGCCGCGGTGATGCCCTACGCCGAAGGCGCGATCTATCAGGTCTACACCACGCCCGAACGGGTGACCGACATGAAAGAAATATGGGTAAAGTACAATTGCCAATGGAAATTGAACTAA

mRNA sequence

ATGTATGGTGGATATGAACACATGAATTTTGTTGATGGGGTTTATAATAATCAAACACCTTGTCCCCAAAGCAAAAACTTCAGGCCGCCAGAGCCGCCGCCGCCGGCCTTCCTCAATGCGGCCGCGGTGATGCCCTACGCCGAAGGCGCGATCTATCAGGTCTACACCACGCCCGAACGGGTGACCGACATGAAAGAAATATGGGTAAAGTACAATTGCCAATGGAAATTGAACTAA

Coding sequence (CDS)

ATGTATGGTGGATATGAACACATGAATTTTGTTGATGGGGTTTATAATAATCAAACACCTTGTCCCCAAAGCAAAAACTTCAGGCCGCCAGAGCCGCCGCCGCCGGCCTTCCTCAATGCGGCCGCGGTGATGCCCTACGCCGAAGGCGCGATCTATCAGGTCTACACCACGCCCGAACGGGTGACCGACATGAAAGAAATATGGGTAAAGTACAATTGCCAATGGAAATTGAACTAA
BLAST of CSPI02G12770 vs. TrEMBL
Match: A0A160TJH4_9ZZZZ (Conjugative transfer protein TrbG OS=hydrothermal vent metagenome GN=MGWOODY_Smn1154 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.2e-06
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 1

Query: 31 EPPPPAFLNAAAVMPYAEGAIYQVYTTPERVTDM 65
          EP PPAF+NA+A+MP+ +G IY+VYT PERVTD+
Sbjct: 54 EPTPPAFINASAIMPFVDGTIYRVYTAPERVTDI 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A160TJH4_9ZZZZ9.2e-0667.65Conjugative transfer protein TrbG OS=hydrothermal vent metagenome GN=MGWOODY_Smn... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G12770.1CSPI02G12770.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G12770CsaV3_2G015330Cucumber (Chinese Long) v3cpicucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G12770Cucumber (Chinese Long) v3cpicucB118
CSPI02G12770Watermelon (97103) v2cpiwmbB112
CSPI02G12770Watermelon (97103) v2cpiwmbB124
CSPI02G12770Wax gourdcpiwgoB181
CSPI02G12770Wild cucumber (PI 183967)cpicpiB089
CSPI02G12770Cucumber (Gy14) v1cgycpiB134
CSPI02G12770Cucurbita maxima (Rimu)cmacpiB441
CSPI02G12770Cucurbita maxima (Rimu)cmacpiB547
CSPI02G12770Cucurbita maxima (Rimu)cmacpiB593
CSPI02G12770Cucurbita moschata (Rifu)cmocpiB429
CSPI02G12770Cucurbita moschata (Rifu)cmocpiB500
CSPI02G12770Cucurbita moschata (Rifu)cmocpiB536
CSPI02G12770Cucurbita moschata (Rifu)cmocpiB582
CSPI02G12770Cucumber (Chinese Long) v2cpicuB065
CSPI02G12770Cucumber (Chinese Long) v2cpicuB094
CSPI02G12770Melon (DHL92) v3.5.1cpimeB102
CSPI02G12770Melon (DHL92) v3.5.1cpimeB123
CSPI02G12770Watermelon (Charleston Gray)cpiwcgB111
CSPI02G12770Watermelon (Charleston Gray)cpiwcgB131
CSPI02G12770Watermelon (97103) v1cpiwmB150
CSPI02G12770Watermelon (97103) v1cpiwmB157
CSPI02G12770Cucurbita pepo (Zucchini)cpecpiB236
CSPI02G12770Cucurbita pepo (Zucchini)cpecpiB269
CSPI02G12770Cucurbita pepo (Zucchini)cpecpiB542
CSPI02G12770Cucurbita pepo (Zucchini)cpecpiB706
CSPI02G12770Bottle gourd (USVL1VR-Ls)cpilsiB091
CSPI02G12770Bottle gourd (USVL1VR-Ls)cpilsiB097
CSPI02G12770Melon (DHL92) v3.6.1cpimedB096
CSPI02G12770Cucumber (Gy14) v2cgybcpiB056
CSPI02G12770Cucumber (Gy14) v2cgybcpiB062
CSPI02G12770Cucumber (Gy14) v2cgybcpiB303
CSPI02G12770Silver-seed gourdcarcpiB0347
CSPI02G12770Silver-seed gourdcarcpiB0468
CSPI02G12770Silver-seed gourdcarcpiB0860