CSPI02G12330.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI02G12330.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 12585718 .. 12586023 (-)
Sequence length306
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAATATTCTATTCAAAGGTAAGTGGGTGATAAATAAAGTTCAAGATTGGAGGGGTGGGCCAGGAAGAACGAGCCATGGTTGCAGGAGTGTCGGTCCACAGCGGGGCTCAGAACATGATTATTTATGCTTTGATGCGACGTTTGTACTAAAAGCCTACACTGGACCCAGCCTCAGCTACCTTTGCTTAGCCACGCCAGCCGTCCCAGCCAACAATCAAAAGCCATTTCTATGTGAGGTCCAAAACACAACAACGCTCTTCCTATTTTGTTTTATTCCAAAATTAAAACTCTACTCTCACTAG

mRNA sequence

ATGTACAATATTCTATTCAAAGGTAAGTGGGTGATAAATAAAGTTCAAGATTGGAGGGGTGGGCCAGGAAGAACGAGCCATGGTTGCAGGAGTGTCGGTCCACAGCGGGGCTCAGAACATGATTATTTATGCTTTGATGCGACGTTTGTACTAAAAGCCTACACTGGACCCAGCCTCAGCTACCTTTGCTTAGCCACGCCAGCCGTCCCAGCCAACAATCAAAAGCCATTTCTATGTGAGGTCCAAAACACAACAACGCTCTTCCTATTTTGTTTTATTCCAAAATTAAAACTCTACTCTCACTAG

Coding sequence (CDS)

ATGTACAATATTCTATTCAAAGGTAAGTGGGTGATAAATAAAGTTCAAGATTGGAGGGGTGGGCCAGGAAGAACGAGCCATGGTTGCAGGAGTGTCGGTCCACAGCGGGGCTCAGAACATGATTATTTATGCTTTGATGCGACGTTTGTACTAAAAGCCTACACTGGACCCAGCCTCAGCTACCTTTGCTTAGCCACGCCAGCCGTCCCAGCCAACAATCAAAAGCCATTTCTATGTGAGGTCCAAAACACAACAACGCTCTTCCTATTTTGTTTTATTCCAAAATTAAAACTCTACTCTCACTAG
Homology
[Close]
BLAST of CSPI02G12330.1 vs. TrEMBL
Match: A0A0A0LJ05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G248655 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-55
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MYNILFKGKWVINKVQDWRGGPGRTSHGCRSVGPQRGSEHDYLCFDATFVLKAYTGPSLS 60
           MYNILFKGKWVINKVQDWRGGPGRTSHGCRSVGPQRGSEHDYLCFDATFVLKAYTGPSLS
Sbjct: 1   MYNILFKGKWVINKVQDWRGGPGRTSHGCRSVGPQRGSEHDYLCFDATFVLKAYTGPSLS 60

Query: 61  YLCLATPAVPANNQKPFLCEVQNTTTLFLFCFIPKLKLYSH 102
           YLCLATPAVPANNQKPFLCEVQNTTTLFLFCFIPKLKLYSH
Sbjct: 61  YLCLATPAVPANNQKPFLCEVQNTTTLFLFCFIPKLKLYSH 101

[Close]
BLAST of CSPI02G12330.1 vs. NCBI nr
Match: gi|700206689|gb|KGN61808.1| (hypothetical protein Csa_2G248655 [Cucumis sativus])

HSP 1 Score: 223.0 bits (567), Expect = 2.4e-55
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MYNILFKGKWVINKVQDWRGGPGRTSHGCRSVGPQRGSEHDYLCFDATFVLKAYTGPSLS 60
           MYNILFKGKWVINKVQDWRGGPGRTSHGCRSVGPQRGSEHDYLCFDATFVLKAYTGPSLS
Sbjct: 1   MYNILFKGKWVINKVQDWRGGPGRTSHGCRSVGPQRGSEHDYLCFDATFVLKAYTGPSLS 60

Query: 61  YLCLATPAVPANNQKPFLCEVQNTTTLFLFCFIPKLKLYSH 102
           YLCLATPAVPANNQKPFLCEVQNTTTLFLFCFIPKLKLYSH
Sbjct: 61  YLCLATPAVPANNQKPFLCEVQNTTTLFLFCFIPKLKLYSH 101

The following BLAST results are available for this feature:
BLAST of CSPI02G12330.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G12330.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ05_CUCSA1.6e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G248655 PE=4 SV=1[more]
BLAST of CSPI02G12330.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G12330.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206689|gb|KGN61808.1|2.4e-55100.00hypothetical protein Csa_2G248655 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G12330CSPI02G12330gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G12330.1CSPI02G12330.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G12330.1.cds1CSPI02G12330.1.cds1CDS