CSPI02G12330 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G12330
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 12585718 .. 12586023 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAATATTCTATTCAAAGGTAAGTGGGTGATAAATAAAGTTCAAGATTGGAGGGGTGGGCCAGGAAGAACGAGCCATGGTTGCAGGAGTGTCGGTCCACAGCGGGGCTCAGAACATGATTATTTATGCTTTGATGCGACGTTTGTACTAAAAGCCTACACTGGACCCAGCCTCAGCTACCTTTGCTTAGCCACGCCAGCCGTCCCAGCCAACAATCAAAAGCCATTTCTATGTGAGGTCCAAAACACAACAACGCTCTTCCTATTTTGTTTTATTCCAAAATTAAAACTCTACTCTCACTAG

mRNA sequence

ATGTACAATATTCTATTCAAAGGTAAGTGGGTGATAAATAAAGTTCAAGATTGGAGGGGTGGGCCAGGAAGAACGAGCCATGGTTGCAGGAGTGTCGGTCCACAGCGGGGCTCAGAACATGATTATTTATGCTTTGATGCGACGTTTGTACTAAAAGCCTACACTGGACCCAGCCTCAGCTACCTTTGCTTAGCCACGCCAGCCGTCCCAGCCAACAATCAAAAGCCATTTCTATGTGAGGTCCAAAACACAACAACGCTCTTCCTATTTTGTTTTATTCCAAAATTAAAACTCTACTCTCACTAG

Coding sequence (CDS)

ATGTACAATATTCTATTCAAAGGTAAGTGGGTGATAAATAAAGTTCAAGATTGGAGGGGTGGGCCAGGAAGAACGAGCCATGGTTGCAGGAGTGTCGGTCCACAGCGGGGCTCAGAACATGATTATTTATGCTTTGATGCGACGTTTGTACTAAAAGCCTACACTGGACCCAGCCTCAGCTACCTTTGCTTAGCCACGCCAGCCGTCCCAGCCAACAATCAAAAGCCATTTCTATGTGAGGTCCAAAACACAACAACGCTCTTCCTATTTTGTTTTATTCCAAAATTAAAACTCTACTCTCACTAG
Homology
[Close]
BLAST of CSPI02G12330 vs. TrEMBL
Match: A0A0A0LJ05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G248655 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-55
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MYNILFKGKWVINKVQDWRGGPGRTSHGCRSVGPQRGSEHDYLCFDATFVLKAYTGPSLS 60
           MYNILFKGKWVINKVQDWRGGPGRTSHGCRSVGPQRGSEHDYLCFDATFVLKAYTGPSLS
Sbjct: 1   MYNILFKGKWVINKVQDWRGGPGRTSHGCRSVGPQRGSEHDYLCFDATFVLKAYTGPSLS 60

Query: 61  YLCLATPAVPANNQKPFLCEVQNTTTLFLFCFIPKLKLYSH 102
           YLCLATPAVPANNQKPFLCEVQNTTTLFLFCFIPKLKLYSH
Sbjct: 61  YLCLATPAVPANNQKPFLCEVQNTTTLFLFCFIPKLKLYSH 101

[Close]
BLAST of CSPI02G12330 vs. NCBI nr
Match: gi|700206689|gb|KGN61808.1| (hypothetical protein Csa_2G248655 [Cucumis sativus])

HSP 1 Score: 223.0 bits (567), Expect = 2.4e-55
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MYNILFKGKWVINKVQDWRGGPGRTSHGCRSVGPQRGSEHDYLCFDATFVLKAYTGPSLS 60
           MYNILFKGKWVINKVQDWRGGPGRTSHGCRSVGPQRGSEHDYLCFDATFVLKAYTGPSLS
Sbjct: 1   MYNILFKGKWVINKVQDWRGGPGRTSHGCRSVGPQRGSEHDYLCFDATFVLKAYTGPSLS 60

Query: 61  YLCLATPAVPANNQKPFLCEVQNTTTLFLFCFIPKLKLYSH 102
           YLCLATPAVPANNQKPFLCEVQNTTTLFLFCFIPKLKLYSH
Sbjct: 61  YLCLATPAVPANNQKPFLCEVQNTTTLFLFCFIPKLKLYSH 101

The following BLAST results are available for this feature:
BLAST of CSPI02G12330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G12330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ05_CUCSA1.6e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G248655 PE=4 SV=1[more]
BLAST of CSPI02G12330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G12330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206689|gb|KGN61808.1|2.4e-55100.00hypothetical protein Csa_2G248655 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G12330.1CSPI02G12330.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G12330CsaV3_2G014870Cucumber (Chinese Long) v3cpicucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G12330Watermelon (97103) v2cpiwmbB112
CSPI02G12330Watermelon (97103) v2cpiwmbB124
CSPI02G12330Wax gourdcpiwgoB146
CSPI02G12330Wax gourdcpiwgoB181
CSPI02G12330Wild cucumber (PI 183967)cpicpiB065
CSPI02G12330Wild cucumber (PI 183967)cpicpiB089
CSPI02G12330Cucumber (Gy14) v1cgycpiB134
CSPI02G12330Cucumber (Gy14) v1cgycpiB503
CSPI02G12330Cucumber (Gy14) v1cgycpiB556
CSPI02G12330Cucurbita maxima (Rimu)cmacpiB441
CSPI02G12330Cucurbita maxima (Rimu)cmacpiB547
CSPI02G12330Cucurbita maxima (Rimu)cmacpiB593
CSPI02G12330Cucurbita moschata (Rifu)cmocpiB429
CSPI02G12330Cucurbita moschata (Rifu)cmocpiB500
CSPI02G12330Cucurbita moschata (Rifu)cmocpiB536
CSPI02G12330Cucurbita moschata (Rifu)cmocpiB582
CSPI02G12330Cucumber (Chinese Long) v2cpicuB065
CSPI02G12330Cucumber (Chinese Long) v2cpicuB094
CSPI02G12330Melon (DHL92) v3.5.1cpimeB090
CSPI02G12330Melon (DHL92) v3.5.1cpimeB102
CSPI02G12330Melon (DHL92) v3.5.1cpimeB123
CSPI02G12330Watermelon (Charleston Gray)cpiwcgB111
CSPI02G12330Watermelon (Charleston Gray)cpiwcgB131
CSPI02G12330Watermelon (97103) v1cpiwmB150
CSPI02G12330Watermelon (97103) v1cpiwmB157
CSPI02G12330Cucurbita pepo (Zucchini)cpecpiB236
CSPI02G12330Cucurbita pepo (Zucchini)cpecpiB269
CSPI02G12330Cucurbita pepo (Zucchini)cpecpiB542
CSPI02G12330Cucurbita pepo (Zucchini)cpecpiB706
CSPI02G12330Bottle gourd (USVL1VR-Ls)cpilsiB091
CSPI02G12330Bottle gourd (USVL1VR-Ls)cpilsiB097
CSPI02G12330Melon (DHL92) v3.6.1cpimedB081
CSPI02G12330Melon (DHL92) v3.6.1cpimedB096
CSPI02G12330Cucumber (Gy14) v2cgybcpiB056
CSPI02G12330Cucumber (Gy14) v2cgybcpiB062
CSPI02G12330Cucumber (Gy14) v2cgybcpiB303
CSPI02G12330Silver-seed gourdcarcpiB0347
CSPI02G12330Silver-seed gourdcarcpiB0509
CSPI02G12330Cucumber (Chinese Long) v3cpicucB118