CSPI02G08450.2 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G08450.2
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Cysteine and histidine-rich domain-containing protein RAR1
Location	Chr2 : 7957013 .. 7959777 (-)
Sequence length	537

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATGTTGTGTATATGATTGTACTCTTAGTTCAACTAAAAACAAGGGTTTCCCTTGTAATTAGTCTTATGATTATTAACGGTTGGAGGGCTCTTCTTGTTTAGCTGGGAGGGGTTCCCTCTACCCTGCTCTTAGGCTGTTCTTTTGGCTCTACTGGTTAATATTTAACCTTTGTTGCTTATAAAAAAATAATAAAGAACAATTATTTAGTAATAACATGTTTCTTTCCTCAACAAGTTATGTTGTCTTGTTCCTTTGCTGCGTAATGTGTACTTTACTAATTGTCTTTTTCCCTTTACTTGCCATGCGGCCACGGGCTTGGTTGAAATTTGTGGTCTCCATTGTTCCCAGGGAGTAAGTTCACATCGACCTATTGGCTCTCAAGAATATCTTAGTTTGTTTTCATACAAGGATTATGTTTTTCTTTAAATATATATTTGAGAGAAGGTAAGTTGAAATATCTTTTGCAGCCTATATTTCATGATGGGATGAAAGAATGGAGCTGTTGCAAGAAAAGAAGCCACGACTTCAGCTTATTTTTAGAGATTCCAGGGTCAGATCTTTTTCATTCTTTTATTTTTAGTTGGAATGCTACACTGTTTCCATGCATAATTGATATGAACTGATGTTTGTTGATTCCATTCCGACACTTTCCTAGAATATACATATTACTTTTGTACAAATAGTAGTTTTTTTCAGGGCAATTCTAAATATGAACCAAGTCTTGGTATCCAGACACTCAAGACTATTTACTCTTATGTTTTAGATGCATCAATTTTGCTACAGATCGTATAATCATTTTTGTACTCAATTTCCGGCTTTGGGTCCTGTCATACCCTGATGTGCAACAGATTCACGTACTTCTTCATTACCCATCATATTCTGAAAGATGGGTGGGTGTGACTTTTTTGTGCTGTCACTTTGCTCCTTGATAATGTTTTTGCCTAAGAATTATTTGATCCTACTACATTTGGCTTCTAAGAAAACTAGTAGGATATTAAATTCTTGGGTAACTTAAACTTGTTCCATCAAAACTATTTGCATTGGCTCGTGTTGACTGTTAAGCCACACACAATGGTTTAATGACATGAATTATTCCCTGTTTGTATGGTTTTTCATTTGGACTCTGGAAGGTTTGTGTTGTTTTCATAATGCTTTTTTGTGACAAGTATGACATGTTCTTCCGCATAGAATACATTCTTGTTTTTCTGATTTTCATTTCTGTAAATCTATCTACAATTTATACAAGTGAGAATACCTTTCATGTTTAAGACTTAGATGGATGGTATTAAAAGCTAAGGTTGGTCTTCGAAAGCCTTTTAAGTTGAATCAAAGTTGTAGTTTTTGTTGACTTTTTTCAATAAAGATGCAAGACCGGAAAACATACAACAGAAAAGCCAGTTTTGACCAAGCCAACCACTGGTGTTAAGAAGCCAAGTCCTCCTTCTTCCATGACAAATACATTAGGGAAAGAGTTATGTGCTAGGTGTCAGCAAGGTTTCTTCTGTTCAGACCATGGTAAGCGCATCTTTTTACTTTTTTTCAATTTGTATCTTGGAGTACCATACCTGGATTTTATGCTATATCTGCAGATGAGTTTGGTATCCTTATTTGGCAATTCTCCTGAATGTTAATATTGCAATTTAATCCAAGTTTGAATCTTAGGTACACAAATTAAAGGCAATAACAAATCTATTAATGAAACCTCAACTATACCTGGTGCAAGCAATACCGATACTCAGGCCCCTCAAAAAAAAAAAAAAATTGGTATGAATGAACCTCAGATCTGCAAGAATAAGGGTTGTGGTAAAACTTTCACAGAGATGGAGAATCATGACACTGCCTGCAGTTACCACCCCGGACCTCCTGTTTTTCATGATCGGATGAGAGGGGTGAGATCATTTATTTACTAAACTTAAAATACACCTTTTTTTGTCGTCATGGCATTTGATTATAGATTATCAACTACTGATATTGATACTTTTTATGTTTGATTTAAAGTGGCAATGCTGCAACATTCACGTTAAGGAATTTGACGAGTTCATGGACATTGCTCCCTGCTCTCGTGGTTGGCACAATGCCGGTCCAGCATAACTAAACAACATAGCCATATAAGGTATTTAGGTTCTTGTATTTTAGAAGGATGTGCTAACCCTTTGGAATTCTGTTTCAGTTAATTTTTTCTTATTCGATGAAATCCCTCAATCTAGACAAATTTATATATTGCATATTTCTCCACTCCATCTTCCTTCCAGAATTGATTGAACTACCAGAAGCTTTGCAAAGACAATCTATTTACTTCCGAGATAAATATCATAATAGTTTATATGGTACAGGGTTTACCATGAACTTTTATTGGACTTGTTTTGTAGTGCAACTTTGTGTTTCTATGAAGATGTTGGAAGGTGGACTGGTTGGTCAGATCTGATTCCGACATTCATTTCCTTCTGGCTTATAAATAGGAGAAACAACTTTGGAGATCTCAGTAACTTCATCAGCATATATACTAAATGCATGAAGCTTCATTTCGATGTTTGTATGTTTATGATAAACTATGTTATATATTTTTTATCCTGCGATATAACATTATTAATATTTTGAAACTGTCCTCGACGTGTTCTTCCGTATAAATGCTCATCTTGTGGTCTCAATGATTGACACGCACCTTATAAATTGAATTCCCCTTCCATCTGATGGCAAACTAGAGCCATATTGTTGCCCCATCAGTTTAATTGAATGGTATATGTATTCATTTCATCTAATCAC

mRNA sequence

ATGAAAGAATGGAGCTGTTGCAAGAAAAGAAGCCACGACTTCAGCTTATTTTTAGAGATTCCAGGATGCAAGACCGGAAAACATACAACAGAAAAGCCAGTTTTGACCAAGCCAACCACTGGTGTTAAGAAGCCAAGTCCTCCTTCTTCCATGACAAATACATTAGGGAAAGAGTTATGTGCTAGGTGTCAGCAAGGTTTCTTCTGTTCAGACCATGGTACACAAATTAAAGGCAATAACAAATCTATTAATGAAACCTCAACTATACCTGGTGCAAGCAATACCGATACTCAGGCCCCTCAAAAAAAAAAAAAAATTGGTATGAATGAACCTCAGATCTGCAAGAATAAGGGTTGTGGTAAAACTTTCACAGAGATGGAGAATCATGACACTGCCTGCAGTTACCACCCCGGACCTCCTGTTTTTCATGATCGGATGAGAGGGTGGCAATGCTGCAACATTCACGTTAAGGAATTTGACGAGTTCATGGACATTGCTCCCTGCTCTCGTGGTTGGCACAATGCCGGTCCAGCATAA

Coding sequence (CDS)

ATGAAAGAATGGAGCTGTTGCAAGAAAAGAAGCCACGACTTCAGCTTATTTTTAGAGATTCCAGGATGCAAGACCGGAAAACATACAACAGAAAAGCCAGTTTTGACCAAGCCAACCACTGGTGTTAAGAAGCCAAGTCCTCCTTCTTCCATGACAAATACATTAGGGAAAGAGTTATGTGCTAGGTGTCAGCAAGGTTTCTTCTGTTCAGACCATGGTACACAAATTAAAGGCAATAACAAATCTATTAATGAAACCTCAACTATACCTGGTGCAAGCAATACCGATACTCAGGCCCCTCAAAAAAAAAAAAAAATTGGTATGAATGAACCTCAGATCTGCAAGAATAAGGGTTGTGGTAAAACTTTCACAGAGATGGAGAATCATGACACTGCCTGCAGTTACCACCCCGGACCTCCTGTTTTTCATGATCGGATGAGAGGGTGGCAATGCTGCAACATTCACGTTAAGGAATTTGACGAGTTCATGGACATTGCTCCCTGCTCTCGTGGTTGGCACAATGCCGGTCCAGCATAA

Homology

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BLAST of CSPI02G08450.2 vs. Swiss-Prot
Match: RAR1_ARATH (Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.7e-64
Identity = 110/182 (60.44%), Postives = 137/182 (75.27%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSM-TNTLGKEL 60
           MKEWSCCK+RSHDFSLFLEIPGCKTGKHTTEKPVL K        +P SS   N   K+ 
Sbjct: 44  MKEWSCCKQRSHDFSLFLEIPGCKTGKHTTEKPVLAKSVPKHPVAAPTSSPDANAATKDS 103

Query: 61  CARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDT----QAPQKKKKIGMNEPQICK 120
           C+RC+QGFFCSDHG+Q K   + I +T   PG +  +       P +K  I +N+PQ+CK
Sbjct: 104 CSRCRQGFFCSDHGSQPK---EQIKQTLNTPGQAEEEKIEPLAPPVQKAVIDINQPQVCK 163

Query: 121 NKGCGKTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNA 178
           NKGCG+TF E +NH+TACS+HPGP VFHDR+RGW+CC++HVKEFDEFM+I PC++GWH++
Sbjct: 164 NKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSS 222

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BLAST of CSPI02G08450.2 vs. Swiss-Prot
Match: RAR1_ORYSJ (Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp. japonica GN=RAR1 PE=1 SV=2)

HSP 1 Score: 241.1 bits (614), Expect = 9.2e-63
Identity = 105/179 (58.66%), Postives = 132/179 (73.74%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC 60
           MK+WSCCK++SHDFSLFL IPGCKTGKHTTEKP+     T   K  P  +   ++G + C
Sbjct: 58  MKQWSCCKQKSHDFSLFLAIPGCKTGKHTTEKPITKAVPTKPSKAVPVQTSKQSVGADTC 117

Query: 61  ARCQQGFFCSDHGTQIKGN-NKSINETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGC 120
           +RC+QGFFCSDHG+Q K     + ++T+ +P         P  KKKI +NEP++CKNKGC
Sbjct: 118 SRCRQGFFCSDHGSQPKAQIPTATSDTNMVPVEKPA---VPPPKKKIDLNEPRVCKNKGC 177

Query: 121 GKTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA 179
           GKT+ E +NHD AC YHPGP VF DR+RGW+CC+IHVKEFDEFM+I PC++GWHNA  A
Sbjct: 178 GKTYKEKDNHDEACDYHPGPAVFRDRIRGWKCCDIHVKEFDEFMEIPPCTKGWHNADAA 233

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BLAST of CSPI02G08450.2 vs. Swiss-Prot
Match: CHRD1_MOUSE (Cysteine and histidine-rich domain-containing protein 1 OS=Mus musculus GN=Chordc1 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-21
Identity = 60/201 (29.85%), Postives = 90/201 (44.78%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPV-------------------------- 60
           +K WSCCK+R+ DFS FL I GC  G+H +EKP                           
Sbjct: 37  LKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEKPPEPVKPEVKTTEKKELSELKPKFQEHI 96

Query: 61  --LTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGA 120
               KP   +K+PSP   MTN L  ++ A  +Q                ++++     G+
Sbjct: 97  IQAPKPVEAIKRPSPDEPMTN-LELKISASLKQ----------------ALDKLKLSSGS 156

Query: 121 SNTDTQAPQKKKKIGMNEPQICKNKGCGKTFTEMENHDTACSYHPGPPVFHDRMRGWQCC 174
                +    + KIG +    CKN GC KT+  +++ +  C YH G P+FH+ M+ W CC
Sbjct: 157 EEDKKEEDSDEIKIGTS----CKNGGCSKTYQGLQSLEEVCVYHSGVPIFHEGMKYWSCC 216

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BLAST of CSPI02G08450.2 vs. Swiss-Prot
Match: CHRD1_HUMAN (Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORDC1 PE=1 SV=2)

HSP 1 Score: 102.4 bits (254), Expect = 5.1e-21
Identity = 60/201 (29.85%), Postives = 89/201 (44.28%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPV-------------------------- 60
           +K WSCCK+R+ DFS FL I GC  G+H +EKP                           
Sbjct: 37  LKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEKPPEPVKPEVKTTEKKELCELKPKFQEHI 96

Query: 61  --LTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGA 120
               KP   +K+PSP   MTN L  ++ A  +Q                ++++     G 
Sbjct: 97  IQAPKPVEAIKRPSPDEPMTN-LELKISASLKQ----------------ALDKLKLSSGN 156

Query: 121 SNTDTQAPQKKKKIGMNEPQICKNKGCGKTFTEMENHDTACSYHPGPPVFHDRMRGWQCC 174
                +    + KIG +    CKN GC KT+  +E+ +  C YH G P+FH+ M+ W CC
Sbjct: 157 EENKKEEDNDEIKIGTS----CKNGGCSKTYQGLESLEEVCVYHSGVPIFHEGMKYWSCC 216

[Close]

BLAST of CSPI02G08450.2 vs. Swiss-Prot
Match: CHRD1_RAT (Cysteine and histidine-rich domain-containing protein 1 OS=Rattus norvegicus GN=Chordc1 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.7e-21
Identity = 60/201 (29.85%), Postives = 89/201 (44.28%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPV-------------------------- 60
           +K WSCCK+R+ DFS FL I GC  G+H +EKP                           
Sbjct: 37  LKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEKPPEPVKPEVKTTEKKELSELKPKFQEHI 96

Query: 61  --LTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGA 120
               KP   +K+PSP   MTN L  ++ A  +Q                ++++     G 
Sbjct: 97  IQAPKPVEAIKRPSPDEPMTN-LELKISASLKQ----------------ALDKLKLSSGN 156

Query: 121 SNTDTQAPQKKKKIGMNEPQICKNKGCGKTFTEMENHDTACSYHPGPPVFHDRMRGWQCC 174
                +    + KIG +    CKN GC KT+  +++ +  C YH G P+FH+ M+ W CC
Sbjct: 157 EEDKKEEDSDEIKIGTS----CKNGGCSKTYQGLQSLEEVCVYHSGVPIFHEGMKYWSCC 216

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BLAST of CSPI02G08450.2 vs. TrEMBL
Match: A0A0A0LKX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G110230 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 9.4e-107
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC 60
           MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC
Sbjct: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC 60

Query: 61  ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCG 120
           ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCG
Sbjct: 61  ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCG 120

Query: 121 KTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA 179
           KTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA
Sbjct: 121 KTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA 178

[Close]

BLAST of CSPI02G08450.2 vs. TrEMBL
Match: V4U6X4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005807mg PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 8.3e-71
Identity = 125/182 (68.68%), Postives = 143/182 (78.57%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLG---- 60
           MKEWSCCK+RSHDFSLFLEIPGCKTGKHTTEKPVLTKP    K P+P  + + TLG    
Sbjct: 45  MKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTP 104

Query: 61  -KELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQK--KKKIGMNEPQI 120
            KELC+RC+QGFFCSDHG+Q K   +  N    +P  SN   + P    KKKIG+NEPQI
Sbjct: 105 SKELCSRCRQGFFCSDHGSQAK---EQTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQI 164

Query: 121 CKNKGCGKTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWH 176
           CKNKGCGKTF E +NH+TACSYHPGP VFHDRMRGW+CC+IHVKEFDEFM I PC++GWH
Sbjct: 165 CKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWH 223

[Close]

BLAST of CSPI02G08450.2 vs. TrEMBL
Match: V4S837_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005807mg PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 8.3e-71
Identity = 125/182 (68.68%), Postives = 143/182 (78.57%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLG---- 60
           MKEWSCCK+RSHDFSLFLEIPGCKTGKHTTEKPVLTKP    K P+P  + + TLG    
Sbjct: 46  MKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTP 105

Query: 61  -KELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQK--KKKIGMNEPQI 120
            KELC+RC+QGFFCSDHG+Q K   +  N    +P  SN   + P    KKKIG+NEPQI
Sbjct: 106 SKELCSRCRQGFFCSDHGSQAK---EQTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQI 165

Query: 121 CKNKGCGKTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWH 176
           CKNKGCGKTF E +NH+TACSYHPGP VFHDRMRGW+CC+IHVKEFDEFM I PC++GWH
Sbjct: 166 CKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWH 224

[Close]

BLAST of CSPI02G08450.2 vs. TrEMBL
Match: A0A067FQA4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027086mg PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 8.3e-71
Identity = 125/182 (68.68%), Postives = 143/182 (78.57%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLG---- 60
           MKEWSCCK+RSHDFSLFLEIPGCKTGKHTTEKPVLTKP    K P+P  + + TLG    
Sbjct: 46  MKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTP 105

Query: 61  -KELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQK--KKKIGMNEPQI 120
            KELC+RC+QGFFCSDHG+Q K   +  N    +P  SN   + P    KKKIG+NEPQI
Sbjct: 106 SKELCSRCRQGFFCSDHGSQAK---EQTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQI 165

Query: 121 CKNKGCGKTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWH 176
           CKNKGCGKTF E +NH+TACSYHPGP VFHDRMRGW+CC+IHVKEFDEFM I PC++GWH
Sbjct: 166 CKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWH 224

[Close]

BLAST of CSPI02G08450.2 vs. TrEMBL
Match: Q8LL14_TOBAC (Rar1 OS=Nicotiana tabacum GN=Rar1 PE=2 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.1e-69
Identity = 125/184 (67.93%), Postives = 143/184 (77.72%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSP-PSSMTNTLGKEL 60
           MK+WSCCKK SHDFSLFLEIPGCK GKHTTEKPV+  P     +  P P+S TN   KE 
Sbjct: 38  MKKWSCCKKSSHDFSLFLEIPGCKIGKHTTEKPVIANPAANRNRAIPAPTSTTNVSPKEA 97

Query: 61  CARCQQGFFCSDHGTQIKGN-NKSINETSTIPGASNTDTQ----APQKKKKIGMNEPQIC 120
           C RC+QGFFCSDHG+Q +    K+ N  +++P  SNTD Q    AP KKK + +NEPQIC
Sbjct: 98  CPRCRQGFFCSDHGSQPREVIPKASNTVTSVPSESNTDIQQCHPAPVKKK-VDINEPQIC 157

Query: 121 KNKGCGKTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHN 179
           KNKGCGKTFTE ENHDTACSYHPGP +FHDRMRGW+CC+IHVKEFDEFM I+PC+ GWHN
Sbjct: 158 KNKGCGKTFTEKENHDTACSYHPGPAIFHDRMRGWKCCDIHVKEFDEFMSISPCTTGWHN 217

[Close]

BLAST of CSPI02G08450.2 vs. TAIR10
Match: AT5G51700.1 (AT5G51700.1 protein binding;zinc ion binding)

HSP 1 Score: 245.7 bits (626), Expect = 2.1e-65
Identity = 110/182 (60.44%), Postives = 137/182 (75.27%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSM-TNTLGKEL 60
           MKEWSCCK+RSHDFSLFLEIPGCKTGKHTTEKPVL K        +P SS   N   K+ 
Sbjct: 44  MKEWSCCKQRSHDFSLFLEIPGCKTGKHTTEKPVLAKSVPKHPVAAPTSSPDANAATKDS 103

Query: 61  CARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDT----QAPQKKKKIGMNEPQICK 120
           C+RC+QGFFCSDHG+Q K   + I +T   PG +  +       P +K  I +N+PQ+CK
Sbjct: 104 CSRCRQGFFCSDHGSQPK---EQIKQTLNTPGQAEEEKIEPLAPPVQKAVIDINQPQVCK 163

Query: 121 NKGCGKTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNA 178
           NKGCG+TF E +NH+TACS+HPGP VFHDR+RGW+CC++HVKEFDEFM+I PC++GWH++
Sbjct: 164 NKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSS 222

[Close]

BLAST of CSPI02G08450.2 vs. NCBI nr
Match: gi|449442307|ref|XP_004138923.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Cucumis sativus])

HSP 1 Score: 394.0 bits (1011), Expect = 1.4e-106
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC 60
           MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC
Sbjct: 42  MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC 101

Query: 61  ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCG 120
           ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCG
Sbjct: 102 ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCG 161

Query: 121 KTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA 179
           KTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA
Sbjct: 162 KTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA 219

[Close]

BLAST of CSPI02G08450.2 vs. NCBI nr
Match: gi|778668194|ref|XP_011649053.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2 [Cucumis sativus])

HSP 1 Score: 394.0 bits (1011), Expect = 1.4e-106
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC 60
           MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC
Sbjct: 41  MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC 100

Query: 61  ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCG 120
           ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCG
Sbjct: 101 ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCG 160

Query: 121 KTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA 179
           KTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA
Sbjct: 161 KTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA 218

[Close]

BLAST of CSPI02G08450.2 vs. NCBI nr
Match: gi|778668197|ref|XP_011649054.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X3 [Cucumis sativus])

HSP 1 Score: 394.0 bits (1011), Expect = 1.4e-106
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC 60
           MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC
Sbjct: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC 60

Query: 61  ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCG 120
           ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCG
Sbjct: 61  ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCG 120

Query: 121 KTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA 179
           KTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA
Sbjct: 121 KTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA 178

[Close]

BLAST of CSPI02G08450.2 vs. NCBI nr
Match: gi|659082603|ref|XP_008441929.1| (PREDICTED: LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing protein RAR1, partial [Cucumis melo])

HSP 1 Score: 359.0 bits (920), Expect = 4.8e-96
Identity = 165/180 (91.67%), Postives = 171/180 (95.00%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPP-SSMTNTLGKEL 60
           MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTT VKK SPP SSMTNTLGKE 
Sbjct: 53  MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTAVKKLSPPLSSMTNTLGKES 112

Query: 61  CARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAP-QKKKKIGMNEPQICKNKG 120
           CARCQQGFFCSDHGTQIKG NKSINETSTIPGASNTDTQ P Q+KK+IG+NEPQICKNKG
Sbjct: 113 CARCQQGFFCSDHGTQIKGTNKSINETSTIPGASNTDTQXPLQQKKRIGINEPQICKNKG 172

Query: 121 CGKTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA 179
           CGKTFTEMENH+TACSYHPGPPVFHDR+RGWQCCNIHVKEFDEFM+I PCSRGWHNA PA
Sbjct: 173 CGKTFTEMENHETACSYHPGPPVFHDRLRGWQCCNIHVKEFDEFMEIPPCSRGWHNADPA 232

[Close]

BLAST of CSPI02G08450.2 vs. NCBI nr
Match: gi|567858172|ref|XP_006421769.1| (hypothetical protein CICLE_v10005807mg [Citrus clementina])

HSP 1 Score: 274.6 bits (701), Expect = 1.2e-70
Identity = 125/182 (68.68%), Postives = 143/182 (78.57%), Query Frame = 1


Query: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLG---- 60
           MKEWSCCK+RSHDFSLFLEIPGCKTGKHTTEKPVLTKP    K P+P  + + TLG    
Sbjct: 45  MKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTP 104

Query: 61  -KELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQK--KKKIGMNEPQI 120
            KELC+RC+QGFFCSDHG+Q K   +  N    +P  SN   + P    KKKIG+NEPQI
Sbjct: 105 SKELCSRCRQGFFCSDHGSQAK---EQTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQI 164

Query: 121 CKNKGCGKTFTEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWH 176
           CKNKGCGKTF E +NH+TACSYHPGP VFHDRMRGW+CC+IHVKEFDEFM I PC++GWH
Sbjct: 165 CKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWH 223

The following BLAST results are available for this feature:

BLAST of CSPI02G08450.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAR1_ARATH	3.7e-64	60.44	Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thalia...	[more]
RAR1_ORYSJ	9.2e-63	58.66	Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp...	[more]
CHRD1_MOUSE	3.0e-21	29.85	Cysteine and histidine-rich domain-containing protein 1 OS=Mus musculus GN=Chord...	[more]
CHRD1_HUMAN	5.1e-21	29.85	Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORD...	[more]
CHRD1_RAT	6.7e-21	29.85	Cysteine and histidine-rich domain-containing protein 1 OS=Rattus norvegicus GN=...	[more]

BLAST of CSPI02G08450.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKX0_CUCSA	9.4e-107	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G110230 PE=4 SV=1	[more]
V4U6X4_9ROSI	8.3e-71	68.68	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005807mg PE=4 SV=1	[more]
V4S837_9ROSI	8.3e-71	68.68	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005807mg PE=4 SV=1	[more]
A0A067FQA4_CITSI	8.3e-71	68.68	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027086mg PE=4 SV=1	[more]
Q8LL14_TOBAC	2.1e-69	67.93	Rar1 OS=Nicotiana tabacum GN=Rar1 PE=2 SV=1	[more]

BLAST of CSPI02G08450.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51700.1	2.1e-65	60.44	protein binding;zinc ion binding	[more]

BLAST of CSPI02G08450.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442307\|ref\|XP_004138923.1\|	1.4e-106	100.00	PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1...	[more]
gi\|778668194\|ref\|XP_011649053.1\|	1.4e-106	100.00	PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2...	[more]
gi\|778668197\|ref\|XP_011649054.1\|	1.4e-106	100.00	PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X3...	[more]
gi\|659082603\|ref\|XP_008441929.1\|	4.8e-96	91.67	PREDICTED: LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing pr...	[more]
gi\|567858172\|ref\|XP_006421769.1\|	1.2e-70	68.68	hypothetical protein CICLE_v10005807mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007051	CHORD_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009814	defense response, incompatible interaction
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0044699	single-organism process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G08450	CSPI02G08450	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G08450.2	CSPI02G08450.2-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G08450.2.utr3p2	CSPI02G08450.2.utr3p2	three_prime_UTR
CSPI02G08450.2.utr3p1	CSPI02G08450.2.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G08450.2.cds4	CSPI02G08450.2.cds4	CDS
CSPI02G08450.2.cds3	CSPI02G08450.2.cds3	CDS
CSPI02G08450.2.cds2	CSPI02G08450.2.cds2	CDS
CSPI02G08450.2.cds1	CSPI02G08450.2.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G08450.2.utr5p1	CSPI02G08450.2.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007051	CHORD domain	PFAM	PF04968	CHORD	coord: 1..28 score: 6.9E-10coord: 113..173 score: 8.4
IPR007051	CHORD domain	PROFILE	PS51401	CHORD	coord: 114..173 score: 30.877coord: 1..28 score: 1
None	No IPR available	PANTHER	PTHR12621	CYSTEINE AND HISTIDINE-RICH DOMAIN CHORD -CONTAINING PROTEIN	coord: 1..173 score: 3.0