CSPI02G08430.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAAGACAGAATTCACTCAATATCATCTTGGAGCCCTGCATTCCGTCATGCATTAAAAAATGAGGAATTTGAAGAATTTCAGCTCCTTCTTAGTGGATTACAAGTCAAAACCATCTCCCCGACCTCAGACTCAAGGGTATGGTCTATGGATCATTCAAGAACTTTTTCAGTGAAATCTCTAACGAAGTTCTTAAATGCCTCTTCACCCCTTGACAAACACATTCACCAAGCACACTGGAAATCAAAGAGTCCAAAGAGAATAAATATTCTGGTGTGGATTATGCTTTTTGGTACTTTAAACTGTGCTACAACTCTTCAACAAGAACTCCAAGCTCATGCTCTCTCTCCTATTTGTCCACTTTGCCACGCTGCAGCGGAGGATTTACAGCATTTAATTTTTGTTTGCCCCTACTCAAGTGCTTGCTGGTGGAAGTGGTTTTCATTTTTTCAGATTTCTTGGGTGTTTAGCTCTTGCTTCAAAGATAATATTCTTTCTGTGTTCAACGGCCCTTCCCTCTCAAATATCCAACGCAGTCAAAGCTTGCTGTCAGAATTATGCTTTGAAAGAAATCAGAGTCTTCCACAATAA ATGCAAGACAGAATTCACTCAATATCATCTTGGAGCCCTGCATTCCGTCATGCATTAAAAAATGAGGAATTTGAAGAATTTCAGCTCCTTCTTAGTGGATTACAAGTCAAAACCATCTCCCCGACCTCAGACTCAAGGGTATGGTCTATGGATCATTCAAGAACTTTTTCAGTGAAATCTCTAACGAAGTTCTTAAATGCCTCTTCACCCCTTGACAAACACATTCACCAAGCACACTGGAAATCAAAGAGTCCAAAGAGAATAAATATTCTGGTGTGGATTATGCTTTTTGGTACTTTAAACTGTGCTACAACTCTTCAACAAGAACTCCAAGCTCATGCTCTCTCTCCTATTTGTCCACTTTGCCACGCTGCAGCGGAGGATTTACAGCATTTAATTTTTGTTTGCCCCTACTCAAGTGCTTGCTGGTGGAAGTGGTTTTCATTTTTTCAGATTTCTTGGGTGTTTAGCTCTTGCTTCAAAGATAATATTCTTTCTGTGTTCAACGGCCCTTCCCTCTCAAATATCCAACGCAGTCAAAGCTTGCTGTCAGAATTATGCTTTGAAAGAAATCAGAGTCTTCCACAATAA ATGCAAGACAGAATTCACTCAATATCATCTTGGAGCCCTGCATTCCGTCATGCATTAAAAAATGAGGAATTTGAAGAATTTCAGCTCCTTCTTAGTGGATTACAAGTCAAAACCATCTCCCCGACCTCAGACTCAAGGGTATGGTCTATGGATCATTCAAGAACTTTTTCAGTGAAATCTCTAACGAAGTTCTTAAATGCCTCTTCACCCCTTGACAAACACATTCACCAAGCACACTGGAAATCAAAGAGTCCAAAGAGAATAAATATTCTGGTGTGGATTATGCTTTTTGGTACTTTAAACTGTGCTACAACTCTTCAACAAGAACTCCAAGCTCATGCTCTCTCTCCTATTTGTCCACTTTGCCACGCTGCAGCGGAGGATTTACAGCATTTAATTTTTGTTTGCCCCTACTCAAGTGCTTGCTGGTGGAAGTGGTTTTCATTTTTTCAGATTTCTTGGGTGTTTAGCTCTTGCTTCAAAGATAATATTCTTTCTGTGTTCAACGGCCCTTCCCTCTCAAATATCCAACGCAGTCAAAGCTTGCTGTCAGAATTATGCTTTGAAAGAAATCAGAGTCTTCCACAATAA
BLAST of CSPI02G08430.1 vs. TrEMBL
Match: F4NCL3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 8.7e-13 Identity = 56/155 (36.13%), Postives = 79/155 (50.97%), Query Frame = 1
BLAST of CSPI02G08430.1 vs. TrEMBL
Match: M5WDM3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017805mg PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 3.7e-11 Identity = 48/133 (36.09%), Postives = 65/133 (48.87%), Query Frame = 1
BLAST of CSPI02G08430.1 vs. TrEMBL
Match: M5XJT6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027084mg PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 4.8e-11 Identity = 47/164 (28.66%), Postives = 74/164 (45.12%), Query Frame = 1
BLAST of CSPI02G08430.1 vs. TrEMBL
Match: M5W6R5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016823mg PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10 Identity = 47/137 (34.31%), Postives = 66/137 (48.18%), Query Frame = 1
BLAST of CSPI02G08430.1 vs. TrEMBL
Match: F4NCK7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 9.0e-10 Identity = 52/191 (27.23%), Postives = 83/191 (43.46%), Query Frame = 1
BLAST of CSPI02G08430.1 vs. NCBI nr
Match: gi|657996200|ref|XP_008390463.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]) HSP 1 Score: 89.7 bits (221), Expect = 6.0e-15 Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 1
BLAST of CSPI02G08430.1 vs. NCBI nr
Match: gi|332322180|emb|CCA66188.1| (hypothetical protein [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12 Identity = 56/155 (36.13%), Postives = 79/155 (50.97%), Query Frame = 1
BLAST of CSPI02G08430.1 vs. NCBI nr
Match: gi|595851823|ref|XP_007210192.1| (hypothetical protein PRUPE_ppa017805mg, partial [Prunus persica]) HSP 1 Score: 76.6 bits (187), Expect = 5.3e-11 Identity = 48/133 (36.09%), Postives = 65/133 (48.87%), Query Frame = 1
BLAST of CSPI02G08430.1 vs. NCBI nr
Match: gi|596246924|ref|XP_007224597.1| (hypothetical protein PRUPE_ppa027084mg, partial [Prunus persica]) HSP 1 Score: 76.3 bits (186), Expect = 6.9e-11 Identity = 47/164 (28.66%), Postives = 74/164 (45.12%), Query Frame = 1
BLAST of CSPI02G08430.1 vs. NCBI nr
Match: gi|731312359|ref|XP_010674085.1| (PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10 Identity = 50/156 (32.05%), Postives = 71/156 (45.51%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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