CSPI02G08430 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G08430
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 7930646 .. 7931236 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGACAGAATTCACTCAATATCATCTTGGAGCCCTGCATTCCGTCATGCATTAAAAAATGAGGAATTTGAAGAATTTCAGCTCCTTCTTAGTGGATTACAAGTCAAAACCATCTCCCCGACCTCAGACTCAAGGGTATGGTCTATGGATCATTCAAGAACTTTTTCAGTGAAATCTCTAACGAAGTTCTTAAATGCCTCTTCACCCCTTGACAAACACATTCACCAAGCACACTGGAAATCAAAGAGTCCAAAGAGAATAAATATTCTGGTGTGGATTATGCTTTTTGGTACTTTAAACTGTGCTACAACTCTTCAACAAGAACTCCAAGCTCATGCTCTCTCTCCTATTTGTCCACTTTGCCACGCTGCAGCGGAGGATTTACAGCATTTAATTTTTGTTTGCCCCTACTCAAGTGCTTGCTGGTGGAAGTGGTTTTCATTTTTTCAGATTTCTTGGGTGTTTAGCTCTTGCTTCAAAGATAATATTCTTTCTGTGTTCAACGGCCCTTCCCTCTCAAATATCCAACGCAGTCAAAGCTTGCTGTCAGAATTATGCTTTGAAAGAAATCAGAGTCTTCCACAATAA

mRNA sequence

ATGCAAGACAGAATTCACTCAATATCATCTTGGAGCCCTGCATTCCGTCATGCATTAAAAAATGAGGAATTTGAAGAATTTCAGCTCCTTCTTAGTGGATTACAAGTCAAAACCATCTCCCCGACCTCAGACTCAAGGGTATGGTCTATGGATCATTCAAGAACTTTTTCAGTGAAATCTCTAACGAAGTTCTTAAATGCCTCTTCACCCCTTGACAAACACATTCACCAAGCACACTGGAAATCAAAGAGTCCAAAGAGAATAAATATTCTGGTGTGGATTATGCTTTTTGGTACTTTAAACTGTGCTACAACTCTTCAACAAGAACTCCAAGCTCATGCTCTCTCTCCTATTTGTCCACTTTGCCACGCTGCAGCGGAGGATTTACAGCATTTAATTTTTGTTTGCCCCTACTCAAGTGCTTGCTGGTGGAAGTGGTTTTCATTTTTTCAGATTTCTTGGGTGTTTAGCTCTTGCTTCAAAGATAATATTCTTTCTGTGTTCAACGGCCCTTCCCTCTCAAATATCCAACGCAGTCAAAGCTTGCTGTCAGAATTATGCTTTGAAAGAAATCAGAGTCTTCCACAATAA

Coding sequence (CDS)

ATGCAAGACAGAATTCACTCAATATCATCTTGGAGCCCTGCATTCCGTCATGCATTAAAAAATGAGGAATTTGAAGAATTTCAGCTCCTTCTTAGTGGATTACAAGTCAAAACCATCTCCCCGACCTCAGACTCAAGGGTATGGTCTATGGATCATTCAAGAACTTTTTCAGTGAAATCTCTAACGAAGTTCTTAAATGCCTCTTCACCCCTTGACAAACACATTCACCAAGCACACTGGAAATCAAAGAGTCCAAAGAGAATAAATATTCTGGTGTGGATTATGCTTTTTGGTACTTTAAACTGTGCTACAACTCTTCAACAAGAACTCCAAGCTCATGCTCTCTCTCCTATTTGTCCACTTTGCCACGCTGCAGCGGAGGATTTACAGCATTTAATTTTTGTTTGCCCCTACTCAAGTGCTTGCTGGTGGAAGTGGTTTTCATTTTTTCAGATTTCTTGGGTGTTTAGCTCTTGCTTCAAAGATAATATTCTTTCTGTGTTCAACGGCCCTTCCCTCTCAAATATCCAACGCAGTCAAAGCTTGCTGTCAGAATTATGCTTTGAAAGAAATCAGAGTCTTCCACAATAA

Homology

[Close]

BLAST of CSPI02G08430 vs. TrEMBL
Match: F4NCL3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.7e-13
Identity = 56/155 (36.13%), Postives = 79/155 (50.97%), Query Frame = 1


Query: 10   SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSR-VWSMDHSRTFSVKSLTKFLN-- 69
            SWS  FR     EE+EE Q LL  +    +SP++D R +W+   S  FSVKS +K L   
Sbjct: 983  SWSRVFRPR-DAEEWEELQGLLGSV---CLSPSTDDRLIWTPHKSGAFSVKSCSKELTNT 1042

Query: 70   ASSPLDK-HIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP----ICPL 129
            A  P  K  I    W+   P RI +  W+ L G LN     +Q+L    + P    +C +
Sbjct: 1043 ALKPQSKIRIWGRLWRGLIPPRIEVFSWVALLGKLNS----RQKLATLNIIPPDDAVCIM 1102

Query: 130  CHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVF 157
            C+ A E   HL+  CP++S+ W  W   + +SWVF
Sbjct: 1103 CNGAPETSDHLLLHCPFASSIWLWWLGIWNVSWVF 1129

[Close]

BLAST of CSPI02G08430 vs. TrEMBL
Match: M5WDM3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017805mg PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-11
Identity = 48/133 (36.09%), Postives = 65/133 (48.87%), Query Frame = 1


Query: 10  SWSPAFRHALKNEEFEEFQLLLSGLQ-VKTISPTSDSRVWSMDHSRTFSVKSLTKFLNAS 69
           SW   FR  L   E EE   LL  L+ V+ I+   D R W +D S  FS  S    +  S
Sbjct: 241 SWEFGFRRNLNELEIEEAARLLDLLEGVRLITSRLDKRRWKLDPSGLFSCHSFCSHIQNS 300

Query: 70  SPLDKHIHQAH-WKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP-ICPLCHAAA 129
              +        WK+K+P ++ I VW  + G LN   TLQ+      LSP  C LC+ A 
Sbjct: 301 GEGEVFSPYTQIWKAKTPPKVKIFVWQAVLGKLNTGDTLQRRCPYLCLSPHWCVLCNMAG 360

Query: 130 EDLQHLIFVCPYS 140
           E++ HL+  CP+S
Sbjct: 361 ENVDHLLLHCPFS 373

[Close]

BLAST of CSPI02G08430 vs. TrEMBL
Match: M5XJT6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027084mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-11
Identity = 47/164 (28.66%), Postives = 74/164 (45.12%), Query Frame = 1


Query: 8   ISSWSPAFRHALKNEEFEEFQLLLSGLQ-VKTISPTSDSRVWSMDHSRTFSVKSLTKFLN 67
           + +W   FR  L   E  E   LL  L+ ++  +   D R W ++ S +F+ KS   FL 
Sbjct: 53  LHNWDFGFRRNLNERETAEVIKLLETLEGIRLCASKRDRRRWDLEDSGSFTCKSFQSFLR 112

Query: 68  ASSPLDKHI-HQAHWKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP-ICPLCHA 127
                +        WK+KSP ++ + VW++  G +N +  +Q++     LSP  C LC  
Sbjct: 113 NKGRAETFPPFSLVWKAKSPPKVKVFVWLVALGKVNTSDLVQRKRPFMYLSPQWCVLCKL 172

Query: 128 AAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVF 169
             E + HL   CP+S + WW  +      WV      D + S F
Sbjct: 173 CEESVDHLFLHCPFSLSLWWLLWREVGTVWVIPKGCSDFLCSDF 216

[Close]

BLAST of CSPI02G08430 vs. TrEMBL
Match: M5W6R5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016823mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10
Identity = 47/137 (34.31%), Postives = 66/137 (48.18%), Query Frame = 1


Query: 10  SWSPAFRHALKNEEFEEFQLLLSGLQ-VKTISPTSDSRVWSMDHSRTFSVKSLTKFLNAS 69
           SW   FR  L   E  E   LL  L+ V+ ++   + R W +D S  FS +S    +  S
Sbjct: 9   SWDFGFRRNLNELEIAEVARLLDLLEGVRLVTSKLNKRRWKLDPSCFFSCQSPCSHIQNS 68

Query: 70  SPLDKHIHQAH-WKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP-ICPLCHAAA 129
              +     A  WK+K+P ++ I VW  + G LN   TLQ+      LSP  C LC+ A 
Sbjct: 69  DEGEVFSPYAQIWKAKTPLKVKIFVWQAVLGKLNTGDTLQRHCPYMCLSPHWCVLCNKAG 128

Query: 130 EDLQHLIFVCPYSSACW 144
           E + HL+  CP+S   W
Sbjct: 129 ESVDHLLLHCPFSLKLW 145

[Close]

BLAST of CSPI02G08430 vs. TrEMBL
Match: F4NCK7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.0e-10
Identity = 52/191 (27.23%), Postives = 83/191 (43.46%), Query Frame = 1


Query: 11   WSPAFRHALKNEE-FEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFL-NAS 70
            WS +++  L+ ++  E+ +L    LQV       D  +W+   S +FS KS+++ L    
Sbjct: 980  WSFSWKRILRPQDAIEKARLDNLLLQVCPARQAQDHLIWAFSKSGSFSTKSVSRQLVKLQ 1039

Query: 71   SPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSPICPLCHAAAED 130
             P  +   +  W    P RI + VW+ L G +N    L      H    ICPLC    E 
Sbjct: 1040 HPHYQDAIRGVWVGLVPHRIELFVWLALLGKINTRDKLASLGIIHGDCNICPLCMTEPET 1099

Query: 131  LQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVF---NGPSLSNIQRSQ--SLL 190
             +HL+  CP +S  W  W   ++I W F    ++     F   N P    +  +    ++
Sbjct: 1100 AEHLLLHCPVASQIWSWWIGLWRIKWAFPLSLREAFTQWFWPKNSPFFKKVWSAVFFIIV 1159

Query: 191  SELCFERNQSL 195
              L  ERNQ +
Sbjct: 1160 WTLWKERNQRI 1170

[Close]

BLAST of CSPI02G08430 vs. NCBI nr
Match: gi|657996200|ref|XP_008390463.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 89.7 bits (221), Expect = 6.0e-15
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 1


Query: 10  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTS-DSRVWSMDHSRTFSVKSLTKFLNAS 69
           SW+  FR  L   E EE   LL  ++   +SP+  D+R W+++ S  F+ KS    L+ +
Sbjct: 322 SWNFDFRRNLNEMEIEEAATLLQKVEEVRLSPSKMDNRRWNLEASGLFTCKSYRSLLSNN 381

Query: 70  SPLDKHIHQAH-WKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSPI-CPLCHAAA 129
             +  +   +  WKSK+P+++ ILVW++  G LN    +Q+      LSP  C LC A  
Sbjct: 382 GIVHYYPPYSQIWKSKAPQKVKILVWLVANGNLNTCDRIQRRNPRMCLSPHWCSLCKAME 441

Query: 130 EDLQHLIFVCPYSSACWWKWFSFFQISWVF-SSCFK 162
             + H+   C YS   WWK F   ++SWV    CF+
Sbjct: 442 VSVNHIFLHCSYSIQLWWKLFQEVKVSWVIPKGCFE 477

[Close]

BLAST of CSPI02G08430 vs. NCBI nr
Match: gi|332322180|emb|CCA66188.1| (hypothetical protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 56/155 (36.13%), Postives = 79/155 (50.97%), Query Frame = 1


Query: 10   SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSR-VWSMDHSRTFSVKSLTKFLN-- 69
            SWS  FR     EE+EE Q LL  +    +SP++D R +W+   S  FSVKS +K L   
Sbjct: 983  SWSRVFRPR-DAEEWEELQGLLGSV---CLSPSTDDRLIWTPHKSGAFSVKSCSKELTNT 1042

Query: 70   ASSPLDK-HIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP----ICPL 129
            A  P  K  I    W+   P RI +  W+ L G LN     +Q+L    + P    +C +
Sbjct: 1043 ALKPQSKIRIWGRLWRGLIPPRIEVFSWVALLGKLNS----RQKLATLNIIPPDDAVCIM 1102

Query: 130  CHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVF 157
            C+ A E   HL+  CP++S+ W  W   + +SWVF
Sbjct: 1103 CNGAPETSDHLLLHCPFASSIWLWWLGIWNVSWVF 1129

[Close]

BLAST of CSPI02G08430 vs. NCBI nr
Match: gi|595851823|ref|XP_007210192.1| (hypothetical protein PRUPE_ppa017805mg, partial [Prunus persica])

HSP 1 Score: 76.6 bits (187), Expect = 5.3e-11
Identity = 48/133 (36.09%), Postives = 65/133 (48.87%), Query Frame = 1


Query: 10  SWSPAFRHALKNEEFEEFQLLLSGLQ-VKTISPTSDSRVWSMDHSRTFSVKSLTKFLNAS 69
           SW   FR  L   E EE   LL  L+ V+ I+   D R W +D S  FS  S    +  S
Sbjct: 241 SWEFGFRRNLNELEIEEAARLLDLLEGVRLITSRLDKRRWKLDPSGLFSCHSFCSHIQNS 300

Query: 70  SPLDKHIHQAH-WKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP-ICPLCHAAA 129
              +        WK+K+P ++ I VW  + G LN   TLQ+      LSP  C LC+ A 
Sbjct: 301 GEGEVFSPYTQIWKAKTPPKVKIFVWQAVLGKLNTGDTLQRRCPYLCLSPHWCVLCNMAG 360

Query: 130 EDLQHLIFVCPYS 140
           E++ HL+  CP+S
Sbjct: 361 ENVDHLLLHCPFS 373

[Close]

BLAST of CSPI02G08430 vs. NCBI nr
Match: gi|596246924|ref|XP_007224597.1| (hypothetical protein PRUPE_ppa027084mg, partial [Prunus persica])

HSP 1 Score: 76.3 bits (186), Expect = 6.9e-11
Identity = 47/164 (28.66%), Postives = 74/164 (45.12%), Query Frame = 1


Query: 8   ISSWSPAFRHALKNEEFEEFQLLLSGLQ-VKTISPTSDSRVWSMDHSRTFSVKSLTKFLN 67
           + +W   FR  L   E  E   LL  L+ ++  +   D R W ++ S +F+ KS   FL 
Sbjct: 53  LHNWDFGFRRNLNERETAEVIKLLETLEGIRLCASKRDRRRWDLEDSGSFTCKSFQSFLR 112

Query: 68  ASSPLDKHI-HQAHWKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP-ICPLCHA 127
                +        WK+KSP ++ + VW++  G +N +  +Q++     LSP  C LC  
Sbjct: 113 NKGRAETFPPFSLVWKAKSPPKVKVFVWLVALGKVNTSDLVQRKRPFMYLSPQWCVLCKL 172

Query: 128 AAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVF 169
             E + HL   CP+S + WW  +      WV      D + S F
Sbjct: 173 CEESVDHLFLHCPFSLSLWWLLWREVGTVWVIPKGCSDFLCSDF 216

[Close]

BLAST of CSPI02G08430 vs. NCBI nr
Match: gi|731312359|ref|XP_010674085.1| (PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 50/156 (32.05%), Postives = 71/156 (45.51%), Query Frame = 1


Query: 10   SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLNASS 69
            SW   FR     +  E+ +L +   QV       D  VW+   +  FS KS+T  L+   
Sbjct: 1170 SWKREFR---PQDRSEKKRLDMRLQQVHPSQEARDQLVWAHTKAGNFSTKSITLELDKMH 1229

Query: 70   PLDKHIHQAH---WKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSPICPLCHAAA 129
            P    IH A    WK   P RI + VW+ L G +N  + L      +A + +CPLC    
Sbjct: 1230 P--PVIHDAIKGVWKGLVPHRIEVFVWLALMGKINTRSKLAGIGIINAENNLCPLCLMEP 1289

Query: 130  EDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKD 163
            E   HL+  C  SS  W  W + +Q+ WVF S  ++
Sbjct: 1290 ETSDHLLLHCSVSSKLWSWWLNLWQVKWVFPSSLRE 1320

The following BLAST results are available for this feature:

BLAST of CSPI02G08430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G08430 vs. TrEMBL


Match Name	E-value	Identity	Description
F4NCL3_BETVU	8.7e-13	36.13	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1	[more]
M5WDM3_PRUPE	3.7e-11	36.09	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017805mg PE=4 S...	[more]
M5XJT6_PRUPE	4.8e-11	28.66	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027084mg PE=4 S...	[more]
M5W6R5_PRUPE	1.8e-10	34.31	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016823mg PE=4 SV=1	[more]
F4NCK7_BETVU	9.0e-10	27.23	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1	[more]

BLAST of CSPI02G08430 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G08430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|657996200\|ref\|XP_008390463.1\|	6.0e-15	33.97	PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]	[more]
gi\|332322180\|emb\|CCA66188.1\|	1.3e-12	36.13	hypothetical protein [Beta vulgaris subsp. vulgaris]	[more]
gi\|595851823\|ref\|XP_007210192.1\|	5.3e-11	36.09	hypothetical protein PRUPE_ppa017805mg, partial [Prunus persica]	[more]
gi\|596246924\|ref\|XP_007224597.1\|	6.9e-11	28.66	hypothetical protein PRUPE_ppa027084mg, partial [Prunus persica]	[more]
gi\|731312359\|ref\|XP_010674085.1\|	1.5e-10	32.05	PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026960	RVT-Znf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G08430.1	CSPI02G08430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 56..143 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G08430	Melon (DHL92) v3.6.1	cpimedB135
CSPI02G08430	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G08430	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G08430	Wax gourd	cpiwgoB140
CSPI02G08430	Cucumber (Gy14) v1	cgycpiB403
CSPI02G08430	Cucurbita maxima (Rimu)	cmacpiB802
CSPI02G08430	Cucurbita moschata (Rifu)	cmocpiB784
CSPI02G08430	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G08430	Melon (DHL92) v3.5.1	cpimeB142
CSPI02G08430	Watermelon (Charleston Gray)	cpiwcgB108
CSPI02G08430	Watermelon (97103) v1	cpiwmB160
CSPI02G08430	Watermelon (97103) v1	cpiwmB168
CSPI02G08430	Cucurbita pepo (Zucchini)	cpecpiB103
CSPI02G08430	Bottle gourd (USVL1VR-Ls)	cpilsiB096