CSPI02G08430 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G08430
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 7930646 .. 7931236 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGACAGAATTCACTCAATATCATCTTGGAGCCCTGCATTCCGTCATGCATTAAAAAATGAGGAATTTGAAGAATTTCAGCTCCTTCTTAGTGGATTACAAGTCAAAACCATCTCCCCGACCTCAGACTCAAGGGTATGGTCTATGGATCATTCAAGAACTTTTTCAGTGAAATCTCTAACGAAGTTCTTAAATGCCTCTTCACCCCTTGACAAACACATTCACCAAGCACACTGGAAATCAAAGAGTCCAAAGAGAATAAATATTCTGGTGTGGATTATGCTTTTTGGTACTTTAAACTGTGCTACAACTCTTCAACAAGAACTCCAAGCTCATGCTCTCTCTCCTATTTGTCCACTTTGCCACGCTGCAGCGGAGGATTTACAGCATTTAATTTTTGTTTGCCCCTACTCAAGTGCTTGCTGGTGGAAGTGGTTTTCATTTTTTCAGATTTCTTGGGTGTTTAGCTCTTGCTTCAAAGATAATATTCTTTCTGTGTTCAACGGCCCTTCCCTCTCAAATATCCAACGCAGTCAAAGCTTGCTGTCAGAATTATGCTTTGAAAGAAATCAGAGTCTTCCACAATAA

mRNA sequence

ATGCAAGACAGAATTCACTCAATATCATCTTGGAGCCCTGCATTCCGTCATGCATTAAAAAATGAGGAATTTGAAGAATTTCAGCTCCTTCTTAGTGGATTACAAGTCAAAACCATCTCCCCGACCTCAGACTCAAGGGTATGGTCTATGGATCATTCAAGAACTTTTTCAGTGAAATCTCTAACGAAGTTCTTAAATGCCTCTTCACCCCTTGACAAACACATTCACCAAGCACACTGGAAATCAAAGAGTCCAAAGAGAATAAATATTCTGGTGTGGATTATGCTTTTTGGTACTTTAAACTGTGCTACAACTCTTCAACAAGAACTCCAAGCTCATGCTCTCTCTCCTATTTGTCCACTTTGCCACGCTGCAGCGGAGGATTTACAGCATTTAATTTTTGTTTGCCCCTACTCAAGTGCTTGCTGGTGGAAGTGGTTTTCATTTTTTCAGATTTCTTGGGTGTTTAGCTCTTGCTTCAAAGATAATATTCTTTCTGTGTTCAACGGCCCTTCCCTCTCAAATATCCAACGCAGTCAAAGCTTGCTGTCAGAATTATGCTTTGAAAGAAATCAGAGTCTTCCACAATAA

Coding sequence (CDS)

ATGCAAGACAGAATTCACTCAATATCATCTTGGAGCCCTGCATTCCGTCATGCATTAAAAAATGAGGAATTTGAAGAATTTCAGCTCCTTCTTAGTGGATTACAAGTCAAAACCATCTCCCCGACCTCAGACTCAAGGGTATGGTCTATGGATCATTCAAGAACTTTTTCAGTGAAATCTCTAACGAAGTTCTTAAATGCCTCTTCACCCCTTGACAAACACATTCACCAAGCACACTGGAAATCAAAGAGTCCAAAGAGAATAAATATTCTGGTGTGGATTATGCTTTTTGGTACTTTAAACTGTGCTACAACTCTTCAACAAGAACTCCAAGCTCATGCTCTCTCTCCTATTTGTCCACTTTGCCACGCTGCAGCGGAGGATTTACAGCATTTAATTTTTGTTTGCCCCTACTCAAGTGCTTGCTGGTGGAAGTGGTTTTCATTTTTTCAGATTTCTTGGGTGTTTAGCTCTTGCTTCAAAGATAATATTCTTTCTGTGTTCAACGGCCCTTCCCTCTCAAATATCCAACGCAGTCAAAGCTTGCTGTCAGAATTATGCTTTGAAAGAAATCAGAGTCTTCCACAATAA
Homology
[Close]
BLAST of CSPI02G08430 vs. TrEMBL
Match: F4NCL3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.7e-13
Identity = 56/155 (36.13%), Postives = 79/155 (50.97%), Query Frame = 1 

Query: 10   SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSR-VWSMDHSRTFSVKSLTKFLN-- 69
            SWS  FR     EE+EE Q LL  +    +SP++D R +W+   S  FSVKS +K L   
Sbjct: 983  SWSRVFRPR-DAEEWEELQGLLGSV---CLSPSTDDRLIWTPHKSGAFSVKSCSKELTNT 1042

Query: 70   ASSPLDK-HIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP----ICPL 129
            A  P  K  I    W+   P RI +  W+ L G LN     +Q+L    + P    +C +
Sbjct: 1043 ALKPQSKIRIWGRLWRGLIPPRIEVFSWVALLGKLNS----RQKLATLNIIPPDDAVCIM 1102

Query: 130  CHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVF 157
            C+ A E   HL+  CP++S+ W  W   + +SWVF
Sbjct: 1103 CNGAPETSDHLLLHCPFASSIWLWWLGIWNVSWVF 1129

[Close]
BLAST of CSPI02G08430 vs. TrEMBL
Match: M5WDM3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017805mg PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-11
Identity = 48/133 (36.09%), Postives = 65/133 (48.87%), Query Frame = 1 

Query: 10  SWSPAFRHALKNEEFEEFQLLLSGLQ-VKTISPTSDSRVWSMDHSRTFSVKSLTKFLNAS 69
           SW   FR  L   E EE   LL  L+ V+ I+   D R W +D S  FS  S    +  S
Sbjct: 241 SWEFGFRRNLNELEIEEAARLLDLLEGVRLITSRLDKRRWKLDPSGLFSCHSFCSHIQNS 300

Query: 70  SPLDKHIHQAH-WKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP-ICPLCHAAA 129
              +        WK+K+P ++ I VW  + G LN   TLQ+      LSP  C LC+ A 
Sbjct: 301 GEGEVFSPYTQIWKAKTPPKVKIFVWQAVLGKLNTGDTLQRRCPYLCLSPHWCVLCNMAG 360

Query: 130 EDLQHLIFVCPYS 140
           E++ HL+  CP+S
Sbjct: 361 ENVDHLLLHCPFS 373

[Close]
BLAST of CSPI02G08430 vs. TrEMBL
Match: M5XJT6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027084mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-11
Identity = 47/164 (28.66%), Postives = 74/164 (45.12%), Query Frame = 1 

Query: 8   ISSWSPAFRHALKNEEFEEFQLLLSGLQ-VKTISPTSDSRVWSMDHSRTFSVKSLTKFLN 67
           + +W   FR  L   E  E   LL  L+ ++  +   D R W ++ S +F+ KS   FL 
Sbjct: 53  LHNWDFGFRRNLNERETAEVIKLLETLEGIRLCASKRDRRRWDLEDSGSFTCKSFQSFLR 112

Query: 68  ASSPLDKHI-HQAHWKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP-ICPLCHA 127
                +        WK+KSP ++ + VW++  G +N +  +Q++     LSP  C LC  
Sbjct: 113 NKGRAETFPPFSLVWKAKSPPKVKVFVWLVALGKVNTSDLVQRKRPFMYLSPQWCVLCKL 172

Query: 128 AAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVF 169
             E + HL   CP+S + WW  +      WV      D + S F
Sbjct: 173 CEESVDHLFLHCPFSLSLWWLLWREVGTVWVIPKGCSDFLCSDF 216

[Close]
BLAST of CSPI02G08430 vs. TrEMBL
Match: M5W6R5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016823mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10
Identity = 47/137 (34.31%), Postives = 66/137 (48.18%), Query Frame = 1 

Query: 10  SWSPAFRHALKNEEFEEFQLLLSGLQ-VKTISPTSDSRVWSMDHSRTFSVKSLTKFLNAS 69
           SW   FR  L   E  E   LL  L+ V+ ++   + R W +D S  FS +S    +  S
Sbjct: 9   SWDFGFRRNLNELEIAEVARLLDLLEGVRLVTSKLNKRRWKLDPSCFFSCQSPCSHIQNS 68

Query: 70  SPLDKHIHQAH-WKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP-ICPLCHAAA 129
              +     A  WK+K+P ++ I VW  + G LN   TLQ+      LSP  C LC+ A 
Sbjct: 69  DEGEVFSPYAQIWKAKTPLKVKIFVWQAVLGKLNTGDTLQRHCPYMCLSPHWCVLCNKAG 128

Query: 130 EDLQHLIFVCPYSSACW 144
           E + HL+  CP+S   W
Sbjct: 129 ESVDHLLLHCPFSLKLW 145

[Close]
BLAST of CSPI02G08430 vs. TrEMBL
Match: F4NCK7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.0e-10
Identity = 52/191 (27.23%), Postives = 83/191 (43.46%), Query Frame = 1 

Query: 11   WSPAFRHALKNEE-FEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFL-NAS 70
            WS +++  L+ ++  E+ +L    LQV       D  +W+   S +FS KS+++ L    
Sbjct: 980  WSFSWKRILRPQDAIEKARLDNLLLQVCPARQAQDHLIWAFSKSGSFSTKSVSRQLVKLQ 1039

Query: 71   SPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSPICPLCHAAAED 130
             P  +   +  W    P RI + VW+ L G +N    L      H    ICPLC    E 
Sbjct: 1040 HPHYQDAIRGVWVGLVPHRIELFVWLALLGKINTRDKLASLGIIHGDCNICPLCMTEPET 1099

Query: 131  LQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVF---NGPSLSNIQRSQ--SLL 190
             +HL+  CP +S  W  W   ++I W F    ++     F   N P    +  +    ++
Sbjct: 1100 AEHLLLHCPVASQIWSWWIGLWRIKWAFPLSLREAFTQWFWPKNSPFFKKVWSAVFFIIV 1159

Query: 191  SELCFERNQSL 195
              L  ERNQ +
Sbjct: 1160 WTLWKERNQRI 1170

[Close]
BLAST of CSPI02G08430 vs. NCBI nr
Match: gi|657996200|ref|XP_008390463.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 89.7 bits (221), Expect = 6.0e-15
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 1 

Query: 10  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTS-DSRVWSMDHSRTFSVKSLTKFLNAS 69
           SW+  FR  L   E EE   LL  ++   +SP+  D+R W+++ S  F+ KS    L+ +
Sbjct: 322 SWNFDFRRNLNEMEIEEAATLLQKVEEVRLSPSKMDNRRWNLEASGLFTCKSYRSLLSNN 381

Query: 70  SPLDKHIHQAH-WKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSPI-CPLCHAAA 129
             +  +   +  WKSK+P+++ ILVW++  G LN    +Q+      LSP  C LC A  
Sbjct: 382 GIVHYYPPYSQIWKSKAPQKVKILVWLVANGNLNTCDRIQRRNPRMCLSPHWCSLCKAME 441

Query: 130 EDLQHLIFVCPYSSACWWKWFSFFQISWVF-SSCFK 162
             + H+   C YS   WWK F   ++SWV    CF+
Sbjct: 442 VSVNHIFLHCSYSIQLWWKLFQEVKVSWVIPKGCFE 477

[Close]
BLAST of CSPI02G08430 vs. NCBI nr
Match: gi|332322180|emb|CCA66188.1| (hypothetical protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 56/155 (36.13%), Postives = 79/155 (50.97%), Query Frame = 1 

Query: 10   SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSR-VWSMDHSRTFSVKSLTKFLN-- 69
            SWS  FR     EE+EE Q LL  +    +SP++D R +W+   S  FSVKS +K L   
Sbjct: 983  SWSRVFRPR-DAEEWEELQGLLGSV---CLSPSTDDRLIWTPHKSGAFSVKSCSKELTNT 1042

Query: 70   ASSPLDK-HIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP----ICPL 129
            A  P  K  I    W+   P RI +  W+ L G LN     +Q+L    + P    +C +
Sbjct: 1043 ALKPQSKIRIWGRLWRGLIPPRIEVFSWVALLGKLNS----RQKLATLNIIPPDDAVCIM 1102

Query: 130  CHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVF 157
            C+ A E   HL+  CP++S+ W  W   + +SWVF
Sbjct: 1103 CNGAPETSDHLLLHCPFASSIWLWWLGIWNVSWVF 1129

[Close]
BLAST of CSPI02G08430 vs. NCBI nr
Match: gi|595851823|ref|XP_007210192.1| (hypothetical protein PRUPE_ppa017805mg, partial [Prunus persica])

HSP 1 Score: 76.6 bits (187), Expect = 5.3e-11
Identity = 48/133 (36.09%), Postives = 65/133 (48.87%), Query Frame = 1 

Query: 10  SWSPAFRHALKNEEFEEFQLLLSGLQ-VKTISPTSDSRVWSMDHSRTFSVKSLTKFLNAS 69
           SW   FR  L   E EE   LL  L+ V+ I+   D R W +D S  FS  S    +  S
Sbjct: 241 SWEFGFRRNLNELEIEEAARLLDLLEGVRLITSRLDKRRWKLDPSGLFSCHSFCSHIQNS 300

Query: 70  SPLDKHIHQAH-WKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP-ICPLCHAAA 129
              +        WK+K+P ++ I VW  + G LN   TLQ+      LSP  C LC+ A 
Sbjct: 301 GEGEVFSPYTQIWKAKTPPKVKIFVWQAVLGKLNTGDTLQRRCPYLCLSPHWCVLCNMAG 360

Query: 130 EDLQHLIFVCPYS 140
           E++ HL+  CP+S
Sbjct: 361 ENVDHLLLHCPFS 373

[Close]
BLAST of CSPI02G08430 vs. NCBI nr
Match: gi|596246924|ref|XP_007224597.1| (hypothetical protein PRUPE_ppa027084mg, partial [Prunus persica])

HSP 1 Score: 76.3 bits (186), Expect = 6.9e-11
Identity = 47/164 (28.66%), Postives = 74/164 (45.12%), Query Frame = 1 

Query: 8   ISSWSPAFRHALKNEEFEEFQLLLSGLQ-VKTISPTSDSRVWSMDHSRTFSVKSLTKFLN 67
           + +W   FR  L   E  E   LL  L+ ++  +   D R W ++ S +F+ KS   FL 
Sbjct: 53  LHNWDFGFRRNLNERETAEVIKLLETLEGIRLCASKRDRRRWDLEDSGSFTCKSFQSFLR 112

Query: 68  ASSPLDKHI-HQAHWKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP-ICPLCHA 127
                +        WK+KSP ++ + VW++  G +N +  +Q++     LSP  C LC  
Sbjct: 113 NKGRAETFPPFSLVWKAKSPPKVKVFVWLVALGKVNTSDLVQRKRPFMYLSPQWCVLCKL 172

Query: 128 AAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVF 169
             E + HL   CP+S + WW  +      WV      D + S F
Sbjct: 173 CEESVDHLFLHCPFSLSLWWLLWREVGTVWVIPKGCSDFLCSDF 216

[Close]
BLAST of CSPI02G08430 vs. NCBI nr
Match: gi|731312359|ref|XP_010674085.1| (PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 50/156 (32.05%), Postives = 71/156 (45.51%), Query Frame = 1 

Query: 10   SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLNASS 69
            SW   FR     +  E+ +L +   QV       D  VW+   +  FS KS+T  L+   
Sbjct: 1170 SWKREFR---PQDRSEKKRLDMRLQQVHPSQEARDQLVWAHTKAGNFSTKSITLELDKMH 1229

Query: 70   PLDKHIHQAH---WKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSPICPLCHAAA 129
            P    IH A    WK   P RI + VW+ L G +N  + L      +A + +CPLC    
Sbjct: 1230 P--PVIHDAIKGVWKGLVPHRIEVFVWLALMGKINTRSKLAGIGIINAENNLCPLCLMEP 1289

Query: 130  EDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKD 163
            E   HL+  C  SS  W  W + +Q+ WVF S  ++
Sbjct: 1290 ETSDHLLLHCSVSSKLWSWWLNLWQVKWVFPSSLRE 1320

The following BLAST results are available for this feature:
BLAST of CSPI02G08430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G08430 vs. TrEMBL
Match NameE-valueIdentityDescription
F4NCL3_BETVU8.7e-1336.13Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1[more]
M5WDM3_PRUPE3.7e-1136.09Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017805mg PE=4 S... [more]
M5XJT6_PRUPE4.8e-1128.66Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027084mg PE=4 S... [more]
M5W6R5_PRUPE1.8e-1034.31Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016823mg PE=4 SV=1[more]
F4NCK7_BETVU9.0e-1027.23Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1[more]
BLAST of CSPI02G08430 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G08430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|657996200|ref|XP_008390463.1|6.0e-1533.97PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
gi|332322180|emb|CCA66188.1|1.3e-1236.13hypothetical protein [Beta vulgaris subsp. vulgaris][more]
gi|595851823|ref|XP_007210192.1|5.3e-1136.09hypothetical protein PRUPE_ppa017805mg, partial [Prunus persica][more]
gi|596246924|ref|XP_007224597.1|6.9e-1128.66hypothetical protein PRUPE_ppa027084mg, partial [Prunus persica][more]
gi|731312359|ref|XP_010674085.1|1.5e-1032.05PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G08430.1CSPI02G08430.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 56..143
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G08430Cucumber (Gy14) v1cgycpiB403
CSPI02G08430Cucurbita maxima (Rimu)cmacpiB802
CSPI02G08430Cucurbita moschata (Rifu)cmocpiB784
CSPI02G08430Cucumber (Chinese Long) v2cpicuB065
CSPI02G08430Melon (DHL92) v3.5.1cpimeB142
CSPI02G08430Watermelon (Charleston Gray)cpiwcgB108
CSPI02G08430Watermelon (97103) v1cpiwmB160
CSPI02G08430Watermelon (97103) v1cpiwmB168
CSPI02G08430Cucurbita pepo (Zucchini)cpecpiB103
CSPI02G08430Bottle gourd (USVL1VR-Ls)cpilsiB096
CSPI02G08430Melon (DHL92) v3.6.1cpimedB135
CSPI02G08430Cucumber (Gy14) v2cgybcpiB056
CSPI02G08430Cucumber (Chinese Long) v3cpicucB080
CSPI02G08430Wax gourdcpiwgoB140