CSPI02G03810.3 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G03810.3
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	E3 ubiquitin-protein ligase Topors
Location	Chr2 : 2665291 .. 2668874 (+)
Sequence length	447

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTCGTTCACTGTAAACCCATGTCGGGTAAGTCCATGGAATTGCAGAGCACTGCATCAATGGAGATGGAGACAAGAACTTCCACTTCGGACTATACGAACCCTTGCCCGATCTGCCTTGGACCCATAAATCAATCTTCCTATCTCGACAAGTGCTTTCGTAAGTTTTTATTTCTCTTAATCTGATCTTTCTTTCGTTTTTCTTAAATTTTCCTGTCATCTAAATAAAAATTGGTTTAGAAAAATTATTCATTTTTATGAATTGGGGTTTCTTTTTTCCGATTCCTGTAGTGACCCATTTGGAAATATTCCTTTATGTGTTACTGTATCAACAGAAGAACTAAGAATCACTCTCTTCTCCTTTTATTAGGAGATTTTAGCTTTTAGCTTTTAGCTCTTCCCCCAATTATCAAGGTTTCTGCCACTGTTATTCGTATTTGATTAACGAAATTGTTTGATGATTATAGTATCTTGTTTGATAATTAACTGAATTCATTTGGTATAGAGATGAACTAGCTAATTCCTTAGCTTTGAGCGTATAAAAAGTTCTTCTGGAGATGCTTAATTTGATTTAATATACTCAGTTCTTTAGTGGCTGTATCCTTTAGGCAAGGAATTTTGCGTGTTAATATGGCTTCATCTTCTTCGATGAAATGGAAAACAGAAACAGCAGCGAGAATGCTTTAGTTTTCTTTGATTTGTTGAATTTGTAATCATTGATGAACTCCTTCACTGTCTTTGAGATGAATATGTTCATTTAATTTATTTTTAATATACTTGCTTATATCTAGGCATGAATATTAGTTTGGTTTATGTTGTGTGTAATGCATGGAATATCGAAATGAAAGAGGAAATATCAGATTTTACATTTGGTATCATGTTGATTACCAGTAATTTCCAAAGTTTAAACCTTGAAGTTTTGGTGAATTTGATCATTTAGTTAACTCTAAAGAATCTATTAGTTCATTCATGTTGAGTACAATGTACCATTTAGAAAAAGAGGAATGTTAAGAAGTTTGAATGGTTTTAGCTTTCAACTCTATTTATATGCCTTCCAGATAACTTTTGTTACAATTGCATTGTACAATGGACCAAAGTGGTTTCTGGGAAGCGCTCCTGCACACTTTCCTCCATTAAATGTCCTTTATGCAAGGTTCAATTTTTCTTCCCCCCGTTAATCTTGTTTTATTTTAGCATTCCATACTTCTAGTATTGCATTTCTTATTTTTTTTTTATAACTAATCACCAGACAGAAAGTTCTTCTATAATACATGGATTAGATGGACACAATTTCCAAAGACATTATGTTAATCCGGATTTCCAGGATAGGTATCTTCCTTTTGACATTTCCCCTAGTTCTTCTATATTTATTTTCTCTACCTTAATTGACTACGGCTATTATTAATGTTATTTGCAGCTTTATCTTATCAAAAGCTCATAGGTATAGATTACAGTGCTATTATACTGAACCAGGTTCGTTTTTTTGTTTATCCTTCAACTTATTATGTGATGATGCTCCAACATTTACATCCAGTTACTCGGATTTATGAATTTCCCTAATTGTCTACATGTAGGTTTCTTGAATGACATATTTGATGTACAGAGGTATTGGAAGTTACAGAAGTATCTCCAGGCAAACCAGTGGCTTGAAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGTTAGTGTCTTATTTTCTTTCATCACATTTGTACTTCTATGGGATATTGCTTCCTTTGGCCCCTTTTTTCTATGGAGAATTGTTTGCATCCAATATCAAACAACATTCTAAGAGTCAAGACCAAATAGGTGGATGGGAAAGGGAGGGAGCTCTTCATTCTTACAGCCGGATTCTTGGGGAAATGAATTCTATCACTGCTCCTAGTAGTCTGTTAACGCCCATCAATAAATGGAGCACAAGACAAGCTAGAAAGTATTTTTTCTGCAAATCATCCCAAGGGTTTCTAACGCAGGCATCCAACTATCCAAGGAATTGGTATCCTATTGAAACATAGAAACCATTGGCTTGTGTCGCCTACTTGCTTCAAGCATATATGGAATGGCTGATCATTCATTGAGTTCATGAGTTTTTTAAGACCTCACTAATCAGGCTTACACTTTTGAGCACATAATGAATGAAATTCACCCCGGATGAAGATTGAATCTCCCCTCCGCATAGGCATGAAAAAAGGTAGGACAAGGATGGAGTTTCTCCCATTTGTGGCATAGTGGGCCGTAGGATGGGTTGTCCTTCTAAGGATGAGGGAGGGGGTTTGTTTATTGATTGGGGATTTAAGAACTTTATTTTATTTCAATGGTGTGGAAACCTGTGTGTATTGTGGAAGTAGACAAGATGAGGTAAAGATGTGTCACTTTCTTTAACTGTGAGGAATTGAGAACTCTGTTTTCGTAGAAAATGGATTACTGTATACAAAACGAGATAGCGGTAGTAGATTTATGTTACTGTTTCTATTGCATAGTTTCTTGATTTATCTATTCTGTTTCTCAGCAGTACAGTTCATTGTTGATGATGACTGATAGTGTTTTATTCACTTTTACAGGAAGAAGATGTTGACATAATTATGCATCACTTTCTTGGTTTAATTAACTCATTTTTTCGTAGGTAATACTAATAATCATCCATCATTGCATTCTATACTTTGGTCAAATAAAAAATTGGTTTAAAACTCCAATTTCGTGGATAGTCCCTAAATTTTAGTTTGTAATAAGTCCCTGTGAGCAGTTTTTATAATATAGTGTCCATATCATAAAAGTCTTGTAAAAAATTAATGGAATTTCTTACCCAAGTATTTGCAATTGGTAGCACTTTTGGAGTTAATTGTGTGTATAACAACATTTTTAAAGAATTGCAAAATTTATCAATGCTAGACTCTTTCGACGATCATTGATAGACTCTGATCAATGACATAGTTAAAAGGCACTGAGAGCTTATCTAAATTTTGCTATATCTACAAATTCTTTCGCATTTTGTGCTATATCTTGGGATATTTTAGATCAGATTGTTATATTTGCAACTTGATAAACTAATTAGGGATCAGATGTATAAGTTACAAAGATTAAGTTTAAGTTGTTACCTAATAAAAATTGACGCTTACTTTTACTAAATCGTTATGACAGGTACAAAGACTAAATTGTTACGTACTAAAGATTAAATGACTAAGTTGTTACACGTTTGAAAGTAGATAGACAAAATTGTTACACACTAGAGAGTTAGGGCTGATCTTTTTTCTTTTTCTTCAATGCTATTCATTCTGGCTTGACATGTAGAATTGTTCAAAACTCATTTTCATTCATCTTTCTTACTACGACCTATCCCCTATCCACATGAATGTAAATATGCATGGATATGATAACTGATTACACTCTGAAATCTGCTTCTTGTTCTTTGTTTTTTCTCCTCAAAGAAATGAACCTAAGTATCAAACAGAAACTCCTGAACTGAAGAGGAAGAGGTTTAGCCAAACGATTCTTGATGCAGCAAAGCCATTCCTTTCAGCAAGAGCAGATCGATTCATTCTCGAGTTGGAGCTATTTCTTGCTTCAGGTTTGAACATTGA

mRNA sequence

ATGTCGGGTAAGTCCATGGAATTGCAGAGCACTGCATCAATGGAGATGGAGACAAGAACTTCCACTTCGGACTATACGAACCCTTGCCCGATCTGCCTTGGACCCATAAATCAATCTTCCTATCTCGACAAGTGCTTTCATAACTTTTGTTACAATTGCATTGTACAATGGACCAAAGTGGTTTCTGGGAAGCGCTCCTGCACACTTTCCTCCATTAAATGTCCTTTATGCAAGACAGAAAGTTCTTCTATAATACATGGATTAGATGGACACAATTTCCAAAGACATTATGTTAATCCGGATTTCCAGGATAGCTTTATCTTATCAAAAGCTCATAGGTATAGATTACAGTGCTATTATACTGAACCAGGTTCGTTTTTTTGTTTATCCTTCAACTTATTATGTGATGATGCTCCAACATTTACATCCAGTTACTCGGATTTATGA

Coding sequence (CDS)

ATGTCGGGTAAGTCCATGGAATTGCAGAGCACTGCATCAATGGAGATGGAGACAAGAACTTCCACTTCGGACTATACGAACCCTTGCCCGATCTGCCTTGGACCCATAAATCAATCTTCCTATCTCGACAAGTGCTTTCATAACTTTTGTTACAATTGCATTGTACAATGGACCAAAGTGGTTTCTGGGAAGCGCTCCTGCACACTTTCCTCCATTAAATGTCCTTTATGCAAGACAGAAAGTTCTTCTATAATACATGGATTAGATGGACACAATTTCCAAAGACATTATGTTAATCCGGATTTCCAGGATAGCTTTATCTTATCAAAAGCTCATAGGTATAGATTACAGTGCTATTATACTGAACCAGGTTCGTTTTTTTGTTTATCCTTCAACTTATTATGTGATGATGCTCCAACATTTACATCCAGTTACTCGGATTTATGA

Homology

[Close]

BLAST of CSPI02G03810.3 vs. Swiss-Prot
Match: TOPRS_MOUSE (E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11
Identity = 32/98 (32.65%), Postives = 49/98 (50.00%), Query Frame = 1


Query: 29  CPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSIKCPLCKTESSSIIHGL 88
           CPICL   +  SYLD+C H FC+ C+ +W+K          +  +CPLCK    SI H +
Sbjct: 104 CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK----------NKAECPLCKQPFDSIFHSV 163

Query: 89  DGH-NFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGS 126
               +F+ + + P +  SF   +  R+R +   T   S
Sbjct: 164 RAEDDFKEYVLRPSYNGSFTNPEVRRFRYRTTMTRERS 191

[Close]

BLAST of CSPI02G03810.3 vs. Swiss-Prot
Match: TOPRS_HUMAN (E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-11
Identity = 31/89 (34.83%), Postives = 47/89 (52.81%), Query Frame = 1


Query: 29  CPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSIKCPLCKTESSSIIHGL 88
           CPICL   +  SYLD+C H FC+ C+ +W+K          +  +CPLCK    SI H +
Sbjct: 103 CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK----------NKAECPLCKQPFDSIFHSV 162

Query: 89  DGH-NFQRHYVNPDFQDSFIL-SKAHRYR 116
               +F+ + + P +  SF+   +  RYR
Sbjct: 163 RAEDDFKEYVLRPSYNGSFVTPDRRFRYR 181

[Close]

BLAST of CSPI02G03810.3 vs. TrEMBL
Match: A0A0A0LLN5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021620 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.5e-69
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60
           MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV
Sbjct: 1   MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60

Query: 61  VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY 120
           VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY
Sbjct: 61  VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY 120

Query: 121 TEPG 125
           TEPG
Sbjct: 121 TEPG 124

[Close]

BLAST of CSPI02G03810.3 vs. TrEMBL
Match: M5WCB8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009982mg PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.7e-40
Identity = 75/112 (66.96%), Postives = 92/112 (82.14%), Query Frame = 1


Query: 13  SMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSI 72
           ++   T +S+S+ +NPCPICLGPI Q SYLDKCFH FCYNCI++WTKVV+ K+SC  +S+
Sbjct: 5   NVNKNTSSSSSEDSNPCPICLGPIIQDSYLDKCFHKFCYNCILRWTKVVAHKQSCLPTSV 64

Query: 73  KCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPG 125
           KCPLCKTE+ SIIHG DG +FQ+HY+N D    FILSK H+YRLQCYYTEPG
Sbjct: 65  KCPLCKTENLSIIHGYDGSSFQKHYINQD--SGFILSKDHKYRLQCYYTEPG 114

[Close]

BLAST of CSPI02G03810.3 vs. TrEMBL
Match: A0A0B2Q4B7_GLYSO (E3 ubiquitin-protein ligase Topors OS=Glycine soja GN=glysoja_012111 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-38
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 1


Query: 5   SMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGK 64
           ++E+++  S E E   S  D +  CPICLGP  Q SYLDKCFH FC+NCI++WTKVV+GK
Sbjct: 6   AIEVRNHVSPEPEPE-SEEDSSCCCPICLGPFLQLSYLDKCFHKFCFNCILRWTKVVAGK 65

Query: 65  RSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPG 124
                SS+KCPLCKTE+ SII+G+DG  FQRHYVN DF+DSFILS+AHRYRLQCYYTE G
Sbjct: 66  HRSPPSSVKCPLCKTENFSIIYGVDGSCFQRHYVNQDFEDSFILSRAHRYRLQCYYTEQG 124

[Close]

BLAST of CSPI02G03810.3 vs. TrEMBL
Match: I1LBD4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G155500 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-38
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 1


Query: 5   SMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGK 64
           ++E+++  S E E   S  D +  CPICLGP  Q SYLDKCFH FC+NCI++WTKVV+GK
Sbjct: 6   AIEVRNHVSPEPEPE-SEEDSSCCCPICLGPFLQLSYLDKCFHKFCFNCILRWTKVVAGK 65

Query: 65  RSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPG 124
                SS+KCPLCKTE+ SII+G+DG  FQRHYVN DF+DSFILS+AHRYRLQCYYTE G
Sbjct: 66  HRSPPSSVKCPLCKTENFSIIYGVDGSCFQRHYVNQDFEDSFILSRAHRYRLQCYYTEQG 124

[Close]

BLAST of CSPI02G03810.3 vs. TrEMBL
Match: V4V3R0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002145mg PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38
Identity = 73/103 (70.87%), Postives = 83/103 (80.58%), Query Frame = 1


Query: 22  TSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSIKCPLCKTES 81
           +S+  NPCPICLGP+ + SYLDKCFH FCYNCIV WTKVV+ K S  LSS+KCPLCKTE+
Sbjct: 14  SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73

Query: 82  SSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPG 125
            SIIHG DG  FQR+Y++  F DSF  SKAHRYRLQ YYTEPG
Sbjct: 74  VSIIHGYDGTYFQRNYISQIFGDSFFFSKAHRYRLQSYYTEPG 116

[Close]

BLAST of CSPI02G03810.3 vs. TAIR10
Match: AT3G05250.1 (AT3G05250.1 RING/U-box superfamily protein)

HSP 1 Score: 147.1 bits (370), Expect = 8.5e-36
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 1


Query: 23  SDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSIKCPLCKTESS 82
           SD+ +PCPICLG   + SYLD CFH FC+NCI QW KVVS K S   SS+ CPLCKTE+ 
Sbjct: 17  SDF-DPCPICLGQFLRESYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTCPLCKTENL 76

Query: 83  SIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPG 125
           SIIH  DG +F+RHY++P+  D F+L+K  RYRLQCYYTE G
Sbjct: 77  SIIHNYDGCSFERHYIDPNIPDGFVLTKEQRYRLQCYYTESG 117

[Close]

BLAST of CSPI02G03810.3 vs. NCBI nr
Match: gi|778666760|ref|XP_004139186.2| (PREDICTED: uncharacterized protein LOC101211581 isoform X1 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 9.3e-69
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60
           MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV
Sbjct: 1   MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60

Query: 61  VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY 120
           VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY
Sbjct: 61  VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY 120

Query: 121 TEPG 125
           TEPG
Sbjct: 121 TEPG 124

[Close]

BLAST of CSPI02G03810.3 vs. NCBI nr
Match: gi|659070388|ref|XP_008454833.1| (PREDICTED: uncharacterized protein LOC103495144 [Cucumis melo])

HSP 1 Score: 250.4 bits (638), Expect = 2.0e-63
Identity = 115/124 (92.74%), Postives = 120/124 (96.77%), Query Frame = 1


Query: 1   MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60
           MS KSMELQS ASME++T TSTSDYT+PCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV
Sbjct: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60

Query: 61  VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY 120
           VSGKRSC LSSIKCPLCKTESSSIIHGLDGH+FQRHYVNPDFQDSFILSKAH+YRLQCYY
Sbjct: 61  VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY 120

Query: 121 TEPG 125
           TEPG
Sbjct: 121 TEPG 124

[Close]

BLAST of CSPI02G03810.3 vs. NCBI nr
Match: gi|595827598|ref|XP_007205719.1| (hypothetical protein PRUPE_ppa009982mg [Prunus persica])

HSP 1 Score: 172.6 bits (436), Expect = 5.3e-40
Identity = 75/112 (66.96%), Postives = 92/112 (82.14%), Query Frame = 1


Query: 13  SMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSI 72
           ++   T +S+S+ +NPCPICLGPI Q SYLDKCFH FCYNCI++WTKVV+ K+SC  +S+
Sbjct: 5   NVNKNTSSSSSEDSNPCPICLGPIIQDSYLDKCFHKFCYNCILRWTKVVAHKQSCLPTSV 64

Query: 73  KCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPG 125
           KCPLCKTE+ SIIHG DG +FQ+HY+N D    FILSK H+YRLQCYYTEPG
Sbjct: 65  KCPLCKTENLSIIHGYDGSSFQKHYINQD--SGFILSKDHKYRLQCYYTEPG 114

[Close]

BLAST of CSPI02G03810.3 vs. NCBI nr
Match: gi|645222229|ref|XP_008246492.1| (PREDICTED: uncharacterized protein LOC103344657 [Prunus mume])

HSP 1 Score: 170.2 bits (430), Expect = 2.6e-39
Identity = 74/112 (66.07%), Postives = 91/112 (81.25%), Query Frame = 1


Query: 13  SMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSI 72
           ++   T +S+S+ +NPCPICLGPI Q SYLDKCFH FCYNCI++WTKVV+ K+SC  +S+
Sbjct: 5   NVNKNTSSSSSEDSNPCPICLGPIIQDSYLDKCFHKFCYNCILRWTKVVAHKQSCLPTSV 64

Query: 73  KCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPG 125
           KCPLCKT + SIIHG DG +FQ+HY+N D    FILSK H+YRLQCYYTEPG
Sbjct: 65  KCPLCKTANLSIIHGYDGSSFQKHYINQD--SGFILSKDHKYRLQCYYTEPG 114

[Close]

BLAST of CSPI02G03810.3 vs. NCBI nr
Match: gi|764598784|ref|XP_011466311.1| (PREDICTED: uncharacterized protein LOC101298921 [Fragaria vesca subsp. vesca])

HSP 1 Score: 168.7 bits (426), Expect = 7.7e-39
Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 1


Query: 6   MELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKR 65
           M  +   ++   + + T + +NPCPICL PI Q SYLDKCFH FCY CI+QWTKVV+ K+
Sbjct: 1   MSQEQELNVYSSSGSPTIEDSNPCPICLAPIFQISYLDKCFHKFCYKCILQWTKVVASKQ 60

Query: 66  SCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPG 125
           S   SSIKCPLCKT++ SIIHG DG +FQ+HY+N D +DSF+LS AH+YRLQCYYTEPG
Sbjct: 61  SDPSSSIKCPLCKTDNFSIIHGYDGCSFQKHYINQDSRDSFVLSSAHKYRLQCYYTEPG 119

The following BLAST results are available for this feature:

BLAST of CSPI02G03810.3 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TOPRS_MOUSE	1.0e-11	32.65	E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1 SV=1	[more]
TOPRS_HUMAN	4.0e-11	34.83	E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1	[more]

BLAST of CSPI02G03810.3 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLN5_CUCSA	6.5e-69	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021620 PE=4 SV=1	[more]
M5WCB8_PRUPE	3.7e-40	66.96	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009982mg PE=4 SV=1	[more]
A0A0B2Q4B7_GLYSO	1.2e-38	65.00	E3 ubiquitin-protein ligase Topors OS=Glycine soja GN=glysoja_012111 PE=4 SV=1	[more]
I1LBD4_SOYBN	1.2e-38	65.00	Uncharacterized protein OS=Glycine max GN=GLYMA_10G155500 PE=4 SV=1	[more]
V4V3R0_9ROSI	1.6e-38	70.87	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002145mg PE=4 SV=1	[more]

BLAST of CSPI02G03810.3 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05250.1	8.5e-36	62.75	RING/U-box superfamily protein	[more]

BLAST of CSPI02G03810.3 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778666760\|ref\|XP_004139186.2\|	9.3e-69	100.00	PREDICTED: uncharacterized protein LOC101211581 isoform X1 [Cucumis sativus]	[more]
gi\|659070388\|ref\|XP_008454833.1\|	2.0e-63	92.74	PREDICTED: uncharacterized protein LOC103495144 [Cucumis melo]	[more]
gi\|595827598\|ref\|XP_007205719.1\|	5.3e-40	66.96	hypothetical protein PRUPE_ppa009982mg [Prunus persica]	[more]
gi\|645222229\|ref\|XP_008246492.1\|	2.6e-39	66.07	PREDICTED: uncharacterized protein LOC103344657 [Prunus mume]	[more]
gi\|764598784\|ref\|XP_011466311.1\|	7.7e-39	62.18	PREDICTED: uncharacterized protein LOC101298921 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR018957	Znf_C3HC4_RING-type

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0008152	metabolic process
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G03810	CSPI02G03810	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G03810.3	CSPI02G03810.3-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G03810.3.utr5p1	CSPI02G03810.3.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G03810.3.cds1	CSPI02G03810.3.cds1	CDS
CSPI02G03810.3.cds2	CSPI02G03810.3.cds2	CDS
CSPI02G03810.3.cds3	CSPI02G03810.3.cds3	CDS
CSPI02G03810.3.cds4	CSPI02G03810.3.cds4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G03810.3.utr3p1	CSPI02G03810.3.utr3p1	three_prime_UTR
CSPI02G03810.3.utr3p2	CSPI02G03810.3.utr3p2	three_prime_UTR
CSPI02G03810.3.utr3p3	CSPI02G03810.3.utr3p3	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 29..77 score: 7.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 29..78 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 27..83 score: 1.5
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 45..54 scor
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 29..77 score: 2.
None	No IPR available	PANTHER	PTHR22937	RING FINGER CONTAINING PROTEIN	coord: 4..122 score: 7.6
None	No IPR available	PANTHER	PTHR22937:SF39	E3 UBIQUITIN-PROTEIN LIGASE TOPORS-RELATED	coord: 4..122 score: 7.6
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 25..87 score: 4.78