CSPI02G03810.2 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G03810.2
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	E3 ubiquitin-protein ligase Topors
Location	Chr2 : 2665291 .. 2667540 (+)
Sequence length	594

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTCGTTCACTGTAAACCCATGTCGGGTAAGTCCATGGAATTGCAGAGCACTGCATCAATGGAGATGGAGACAAGAACTTCCACTTCGGACTATACGAACCCTTGCCCGATCTGCCTTGGACCCATAAATCAATCTTCCTATCTCGACAAGTGCTTTCGTAAGTTTTTATTTCTCTTAATCTGATCTTTCTTTCGTTTTTCTTAAATTTTCCTGTCATCTAAATAAAAATTGGTTTAGAAAAATTATTCATTTTTATGAATTGGGGTTTCTTTTTTCCGATTCCTGTAGTGACCCATTTGGAAATATTCCTTTATGTGTTACTGTATCAACAGAAGAACTAAGAATCACTCTCTTCTCCTTTTATTAGGAGATTTTAGCTTTTAGCTTTTAGCTCTTCCCCCAATTATCAAGGTTTCTGCCACTGTTATTCGTATTTGATTAACGAAATTGTTTGATGATTATAGTATCTTGTTTGATAATTAACTGAATTCATTTGGTATAGAGATGAACTAGCTAATTCCTTAGCTTTGAGCGTATAAAAAGTTCTTCTGGAGATGCTTAATTTGATTTAATATACTCAGTTCTTTAGTGGCTGTATCCTTTAGGCAAGGAATTTTGCGTGTTAATATGGCTTCATCTTCTTCGATGAAATGGAAAACAGAAACAGCAGCGAGAATGCTTTAGTTTTCTTTGATTTGTTGAATTTGTAATCATTGATGAACTCCTTCACTGTCTTTGAGATGAATATGTTCATTTAATTTATTTTTAATATACTTGCTTATATCTAGGCATGAATATTAGTTTGGTTTATGTTGTGTGTAATGCATGGAATATCGAAATGAAAGAGGAAATATCAGATTTTACATTTGGTATCATGTTGATTACCAGTAATTTCCAAAGTTTAAACCTTGAAGTTTTGGTGAATTTGATCATTTAGTTAACTCTAAAGAATCTATTAGTTCATTCATGTTGAGTACAATGTACCATTTAGAAAAAGAGGAATGTTAAGAAGTTTGAATGGTTTTAGCTTTCAACTCTATTTATATGCCTTCCAGATAACTTTTGTTACAATTGCATTGTACAATGGACCAAAGTGGTTTCTGGGAAGCGCTCCTGCACACTTTCCTCCATTAAATGTCCTTTATGCAAGGTTCAATTTTTCTTCCCCCCGTTAATCTTGTTTTATTTTAGCATTCCATACTTCTAGTATTGCATTTCTTATTTTTTTTTTATAACTAATCACCAGACAGAAAGTTCTTCTATAATACATGGATTAGATGGACACAATTTCCAAAGACATTATGTTAATCCGGATTTCCAGGATAGGTATCTTCCTTTTGACATTTCCCCTAGTTCTTCTATATTTATTTTCTCTACCTTAATTGACTACGGCTATTATTAATGTTATTTGCAGCTTTATCTTATCAAAAGCTCATAGGTATAGATTACAGTGCTATTATACTGAACCAGGTTCGTTTTTTTGTTTATCCTTCAACTTATTATGTGATGATGCTCCAACATTTACATCCAGTTACTCGGATTTATGAATTTCCCTAATTGTCTACATGTAGGTTTCTTGAATGACATATTTGATGTACAGAGGTATTGGAAGTTACAGAAGTATCTCCAGGCAAACCAGTGGCTTGAAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGTTAGTGTCTTATTTTCTTTCATCACATTTGTACTTCTATGGGATATTGCTTCCTTTGGCCCCTTTTTTCTATGGAGAATTGTTTGCATCCAATATCAAACAACATTCTAAGAGTCAAGACCAAATAGGTGGATGGGAAAGGGAGGGAGCTCTTCATTCTTACAGCCGGATTCTTGGGGAAATGAATTCTATCACTGCTCCTAGTAGTCTGTTAACGCCCATCAATAAATGGAGCACAAGACAAGCTAGAAAGTATTTTTTCTGCAAATCATCCCAAGGGTTTCTAACGCAGGCATCCAACTATCCAAGGAATTGGTATCCTATTGAAACATAGAAACCATTGGCTTGTGTCGCCTACTTGCTTCAAGCATATATGGAATGGCTGATCATTCATTGAGTTCATGAGTTTTTTAAGACCTCACTAATCAGGCTTACACTTTTGAGCACATAATGAATGAAATTCACCCCGGATGAAGATTGAATCTCCCCTCCGCATAGGCATGAAAAAAGGTAGGACAAGGATGGAGTTTCTCCCATTTGTGGCATAGTGGGCCGTAGGATGG

mRNA sequence

ATGTCGGGTAAGTCCATGGAATTGCAGAGCACTGCATCAATGGAGATGGAGACAAGAACTTCCACTTCGGACTATACGAACCCTTGCCCGATCTGCCTTGGACCCATAAATCAATCTTCCTATCTCGACAAGTGCTTTCATAACTTTTGTTACAATTGCATTGTACAATGGACCAAAGTGGTTTCTGGGAAGCGCTCCTGCACACTTTCCTCCATTAAATGTCCTTTATGCAAGACAGAAAGTTCTTCTATAATACATGGATTAGATGGACACAATTTCCAAAGACATTATGTTAATCCGGATTTCCAGGATAGCTTTATCTTATCAAAAGCTCATAGGTATAGATTACAGTGCTATTATACTGAACCAGGTTTCTTGAATGACATATTTGATGTACAGAGGTATTGGAAGTTACAGAAGTATCTCCAGGCAAACCAGTGGCTTGAAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGTTAGTGTCTTATTTTCTTTCATCACATTTGTACTTCTATGGGATATTGCTTCCTTTGGCCCCTTTTTTCTATGGAGAATTGTTTGCATCCAATATCAAACAACATTCTAA

Coding sequence (CDS)

ATGTCGGGTAAGTCCATGGAATTGCAGAGCACTGCATCAATGGAGATGGAGACAAGAACTTCCACTTCGGACTATACGAACCCTTGCCCGATCTGCCTTGGACCCATAAATCAATCTTCCTATCTCGACAAGTGCTTTCATAACTTTTGTTACAATTGCATTGTACAATGGACCAAAGTGGTTTCTGGGAAGCGCTCCTGCACACTTTCCTCCATTAAATGTCCTTTATGCAAGACAGAAAGTTCTTCTATAATACATGGATTAGATGGACACAATTTCCAAAGACATTATGTTAATCCGGATTTCCAGGATAGCTTTATCTTATCAAAAGCTCATAGGTATAGATTACAGTGCTATTATACTGAACCAGGTTTCTTGAATGACATATTTGATGTACAGAGGTATTGGAAGTTACAGAAGTATCTCCAGGCAAACCAGTGGCTTGAAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGTTAGTGTCTTATTTTCTTTCATCACATTTGTACTTCTATGGGATATTGCTTCCTTTGGCCCCTTTTTTCTATGGAGAATTGTTTGCATCCAATATCAAACAACATTCTAA

Homology

[Close]

BLAST of CSPI02G03810.2 vs. Swiss-Prot
Match: TOPRS_MOUSE (E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-11
Identity = 31/94 (32.98%), Postives = 48/94 (51.06%), Query Frame = 1


Query: 29  CPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSIKCPLCKTESSSIIHGL 88
           CPICL   +  SYLD+C H FC+ C+ +W+K          +  +CPLCK    SI H +
Sbjct: 104 CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK----------NKAECPLCKQPFDSIFHSV 163

Query: 89  DGH-NFQRHYVNPDFQDSFILSKAHRYRLQCYYT 122
               +F+ + + P +  SF   +  R+R +   T
Sbjct: 164 RAEDDFKEYVLRPSYNGSFTNPEVRRFRYRTTMT 187

[Close]

BLAST of CSPI02G03810.2 vs. Swiss-Prot
Match: TOPRS_HUMAN (E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.3e-11
Identity = 31/89 (34.83%), Postives = 47/89 (52.81%), Query Frame = 1


Query: 29  CPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSIKCPLCKTESSSIIHGL 88
           CPICL   +  SYLD+C H FC+ C+ +W+K          +  +CPLCK    SI H +
Sbjct: 103 CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK----------NKAECPLCKQPFDSIFHSV 162

Query: 89  DGH-NFQRHYVNPDFQDSFIL-SKAHRYR 116
               +F+ + + P +  SF+   +  RYR
Sbjct: 163 RAEDDFKEYVLRPSYNGSFVTPDRRFRYR 181

[Close]

BLAST of CSPI02G03810.2 vs. TrEMBL
Match: A0A0A0LLN5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021620 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 1.6e-91
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1


Query: 1   MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60
           MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV
Sbjct: 1   MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60

Query: 61  VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY 120
           VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY
Sbjct: 61  VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY 120

Query: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQ 162
           TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQ
Sbjct: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQ 161

[Close]

BLAST of CSPI02G03810.2 vs. TrEMBL
Match: M5WCB8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009982mg PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.0e-58
Identity = 102/149 (68.46%), Postives = 124/149 (83.22%), Query Frame = 1


Query: 13  SMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSI 72
           ++   T +S+S+ +NPCPICLGPI Q SYLDKCFH FCYNCI++WTKVV+ K+SC  +S+
Sbjct: 5   NVNKNTSSSSSEDSNPCPICLGPIIQDSYLDKCFHKFCYNCILRWTKVVAHKQSCLPTSV 64

Query: 73  KCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGFLNDIFDV 132
           KCPLCKTE+ SIIHG DG +FQ+HY+N D    FILSK H+YRLQCYYTEPGFLNDIFDV
Sbjct: 65  KCPLCKTENLSIIHGYDGSSFQKHYINQD--SGFILSKDHKYRLQCYYTEPGFLNDIFDV 124

Query: 133 QRYWKLQKYLQANQWLEVWLKRELQALIQ 162
            RYWK  KYLQ N+WL+ WL+RE+QAL+Q
Sbjct: 125 LRYWKSHKYLQPNRWLQSWLRREIQALMQ 151

[Close]

BLAST of CSPI02G03810.2 vs. TrEMBL
Match: A0A067F053_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045854mg PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.9e-55
Identity = 97/140 (69.29%), Postives = 116/140 (82.86%), Query Frame = 1


Query: 22  TSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSIKCPLCKTES 81
           +S+  NPCPICLGP+ + SYLDKCFH FCYNCIV WTKVV+ K S  LSS+KCPLCKTE+
Sbjct: 14  SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73

Query: 82  SSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGFLNDIFDVQRYWKLQKY 141
            SIIHG DG  FQR+Y++  F DSF  SKAHRYRLQ YYTEPG LND+F+V RYWK +KY
Sbjct: 74  VSIIHGYDGTYFQRNYISQIFGDSFFFSKAHRYRLQSYYTEPGILNDVFNVSRYWKSRKY 133

Query: 142 LQANQWLEVWLKRELQALIQ 162
           LQ+NQWL+ WL+RE+QA++Q
Sbjct: 134 LQSNQWLQSWLRREIQAVMQ 153

[Close]

BLAST of CSPI02G03810.2 vs. TrEMBL
Match: V4V3R0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002145mg PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.9e-55
Identity = 97/140 (69.29%), Postives = 116/140 (82.86%), Query Frame = 1


Query: 22  TSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSIKCPLCKTES 81
           +S+  NPCPICLGP+ + SYLDKCFH FCYNCIV WTKVV+ K S  LSS+KCPLCKTE+
Sbjct: 14  SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73

Query: 82  SSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGFLNDIFDVQRYWKLQKY 141
            SIIHG DG  FQR+Y++  F DSF  SKAHRYRLQ YYTEPG LND+F+V RYWK +KY
Sbjct: 74  VSIIHGYDGTYFQRNYISQIFGDSFFFSKAHRYRLQSYYTEPGILNDVFNVSRYWKSRKY 133

Query: 142 LQANQWLEVWLKRELQALIQ 162
           LQ+NQWL+ WL+RE+QA++Q
Sbjct: 134 LQSNQWLQSWLRREIQAVMQ 153

[Close]

BLAST of CSPI02G03810.2 vs. TrEMBL
Match: F6HYY8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0128g00310 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.8e-54
Identity = 95/149 (63.76%), Postives = 114/149 (76.51%), Query Frame = 1


Query: 13  SMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSI 72
           S +     S S+  NPCPICLGP+ + SYLD+CFH FCY+CIV+WTKVV+ K     S+I
Sbjct: 14  SKDTSCNDSPSEGPNPCPICLGPVVKDSYLDQCFHKFCYDCIVRWTKVVASKHCRLSSTI 73

Query: 73  KCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGFLNDIFDV 132
           KCP CKTE+ SI+HG DG +FQ+HY+N DF  SF  SKAH+YRLQCYYTEPG LND F+V
Sbjct: 74  KCPFCKTENFSIVHGYDGSSFQQHYINQDFGKSFSFSKAHKYRLQCYYTEPGILNDKFNV 133

Query: 133 QRYWKLQKYLQANQWLEVWLKRELQALIQ 162
            RYWK  KY Q NQWL+ WL+RE+QALIQ
Sbjct: 134 SRYWKFHKYRQPNQWLQAWLRREIQALIQ 162

[Close]

BLAST of CSPI02G03810.2 vs. TAIR10
Match: AT3G05250.1 (AT3G05250.1 RING/U-box superfamily protein)

HSP 1 Score: 201.4 bits (511), Expect = 5.0e-52
Identity = 90/139 (64.75%), Postives = 109/139 (78.42%), Query Frame = 1


Query: 23  SDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSIKCPLCKTESS 82
           SD+ +PCPICLG   + SYLD CFH FC+NCI QW KVVS K S   SS+ CPLCKTE+ 
Sbjct: 17  SDF-DPCPICLGQFLRESYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTCPLCKTENL 76

Query: 83  SIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGFLNDIFDVQRYWKLQKYL 142
           SIIH  DG +F+RHY++P+  D F+L+K  RYRLQCYYTE GFL D+FDV R+WKLQK+L
Sbjct: 77  SIIHNYDGCSFERHYIDPNIPDGFVLTKEQRYRLQCYYTESGFLADVFDVARFWKLQKFL 136

Query: 143 QANQWLEVWLKRELQALIQ 162
           Q N+ LE WL+RELQAL+Q
Sbjct: 137 QPNRCLEAWLRRELQALMQ 154

[Close]

BLAST of CSPI02G03810.2 vs. NCBI nr
Match: gi|778666760|ref|XP_004139186.2| (PREDICTED: uncharacterized protein LOC101211581 isoform X1 [Cucumis sativus])

HSP 1 Score: 343.6 bits (880), Expect = 2.3e-91
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1


Query: 1   MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60
           MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV
Sbjct: 1   MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60

Query: 61  VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY 120
           VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY
Sbjct: 61  VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY 120

Query: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQ 162
           TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQ
Sbjct: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQ 161

[Close]

BLAST of CSPI02G03810.2 vs. NCBI nr
Match: gi|659070388|ref|XP_008454833.1| (PREDICTED: uncharacterized protein LOC103495144 [Cucumis melo])

HSP 1 Score: 325.9 bits (834), Expect = 5.0e-86
Identity = 152/161 (94.41%), Postives = 157/161 (97.52%), Query Frame = 1


Query: 1   MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60
           MS KSMELQS ASME++T TSTSDYT+PCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV
Sbjct: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60

Query: 61  VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY 120
           VSGKRSC LSSIKCPLCKTESSSIIHGLDGH+FQRHYVNPDFQDSFILSKAH+YRLQCYY
Sbjct: 61  VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY 120

Query: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQ 162
           TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQ
Sbjct: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQ 161

[Close]

BLAST of CSPI02G03810.2 vs. NCBI nr
Match: gi|595827598|ref|XP_007205719.1| (hypothetical protein PRUPE_ppa009982mg [Prunus persica])

HSP 1 Score: 231.5 bits (589), Expect = 1.3e-57
Identity = 102/149 (68.46%), Postives = 124/149 (83.22%), Query Frame = 1


Query: 13  SMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSI 72
           ++   T +S+S+ +NPCPICLGPI Q SYLDKCFH FCYNCI++WTKVV+ K+SC  +S+
Sbjct: 5   NVNKNTSSSSSEDSNPCPICLGPIIQDSYLDKCFHKFCYNCILRWTKVVAHKQSCLPTSV 64

Query: 73  KCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGFLNDIFDV 132
           KCPLCKTE+ SIIHG DG +FQ+HY+N D    FILSK H+YRLQCYYTEPGFLNDIFDV
Sbjct: 65  KCPLCKTENLSIIHGYDGSSFQKHYINQD--SGFILSKDHKYRLQCYYTEPGFLNDIFDV 124

Query: 133 QRYWKLQKYLQANQWLEVWLKRELQALIQ 162
            RYWK  KYLQ N+WL+ WL+RE+QAL+Q
Sbjct: 125 LRYWKSHKYLQPNRWLQSWLRREIQALMQ 151

[Close]

BLAST of CSPI02G03810.2 vs. NCBI nr
Match: gi|645222229|ref|XP_008246492.1| (PREDICTED: uncharacterized protein LOC103344657 [Prunus mume])

HSP 1 Score: 229.2 bits (583), Expect = 6.4e-57
Identity = 101/149 (67.79%), Postives = 123/149 (82.55%), Query Frame = 1


Query: 13  SMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSI 72
           ++   T +S+S+ +NPCPICLGPI Q SYLDKCFH FCYNCI++WTKVV+ K+SC  +S+
Sbjct: 5   NVNKNTSSSSSEDSNPCPICLGPIIQDSYLDKCFHKFCYNCILRWTKVVAHKQSCLPTSV 64

Query: 73  KCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGFLNDIFDV 132
           KCPLCKT + SIIHG DG +FQ+HY+N D    FILSK H+YRLQCYYTEPGFLNDIFDV
Sbjct: 65  KCPLCKTANLSIIHGYDGSSFQKHYINQD--SGFILSKDHKYRLQCYYTEPGFLNDIFDV 124

Query: 133 QRYWKLQKYLQANQWLEVWLKRELQALIQ 162
            RYWK  KYLQ N+WL+ WL+RE+QAL+Q
Sbjct: 125 LRYWKSHKYLQPNRWLQSWLRREIQALMQ 151

[Close]

BLAST of CSPI02G03810.2 vs. NCBI nr
Match: gi|568835878|ref|XP_006471981.1| (PREDICTED: uncharacterized protein LOC102607125 isoform X1 [Citrus sinensis])

HSP 1 Score: 223.8 bits (569), Expect = 2.7e-55
Identity = 97/140 (69.29%), Postives = 116/140 (82.86%), Query Frame = 1


Query: 22  TSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCTLSSIKCPLCKTES 81
           +S+  NPCPICLGP+ + SYLDKCFH FCYNCIV WTKVV+ K S  LSS+KCPLCKTE+
Sbjct: 14  SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73

Query: 82  SSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGFLNDIFDVQRYWKLQKY 141
            SIIHG DG  FQR+Y++  F DSF  SKAHRYRLQ YYTEPG LND+F+V RYWK +KY
Sbjct: 74  VSIIHGYDGTYFQRNYISQIFGDSFFFSKAHRYRLQSYYTEPGILNDVFNVSRYWKSRKY 133

Query: 142 LQANQWLEVWLKRELQALIQ 162
           LQ+NQWL+ WL+RE+QA++Q
Sbjct: 134 LQSNQWLQSWLRREIQAVMQ 153

The following BLAST results are available for this feature:

BLAST of CSPI02G03810.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TOPRS_MOUSE	2.4e-11	32.98	E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1 SV=1	[more]
TOPRS_HUMAN	5.3e-11	34.83	E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1	[more]

BLAST of CSPI02G03810.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLN5_CUCSA	1.6e-91	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021620 PE=4 SV=1	[more]
M5WCB8_PRUPE	9.0e-58	68.46	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009982mg PE=4 SV=1	[more]
A0A067F053_CITSI	1.9e-55	69.29	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045854mg PE=4 SV=1	[more]
V4V3R0_9ROSI	1.9e-55	69.29	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002145mg PE=4 SV=1	[more]
F6HYY8_VITVI	7.8e-54	63.76	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0128g00310 PE=4 SV=...	[more]

BLAST of CSPI02G03810.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05250.1	5.0e-52	64.75	RING/U-box superfamily protein	[more]

BLAST of CSPI02G03810.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778666760\|ref\|XP_004139186.2\|	2.3e-91	100.00	PREDICTED: uncharacterized protein LOC101211581 isoform X1 [Cucumis sativus]	[more]
gi\|659070388\|ref\|XP_008454833.1\|	5.0e-86	94.41	PREDICTED: uncharacterized protein LOC103495144 [Cucumis melo]	[more]
gi\|595827598\|ref\|XP_007205719.1\|	1.3e-57	68.46	hypothetical protein PRUPE_ppa009982mg [Prunus persica]	[more]
gi\|645222229\|ref\|XP_008246492.1\|	6.4e-57	67.79	PREDICTED: uncharacterized protein LOC103344657 [Prunus mume]	[more]
gi\|568835878\|ref\|XP_006471981.1\|	2.7e-55	69.29	PREDICTED: uncharacterized protein LOC102607125 isoform X1 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR018957	Znf_C3HC4_RING-type

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0008152	metabolic process
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G03810	CSPI02G03810	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G03810.2	CSPI02G03810.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G03810.2.utr5p1	CSPI02G03810.2.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G03810.2.cds1	CSPI02G03810.2.cds1	CDS
CSPI02G03810.2.cds2	CSPI02G03810.2.cds2	CDS
CSPI02G03810.2.cds3	CSPI02G03810.2.cds3	CDS
CSPI02G03810.2.cds4	CSPI02G03810.2.cds4	CDS
CSPI02G03810.2.cds5	CSPI02G03810.2.cds5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G03810.2.utr3p1	CSPI02G03810.2.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 29..77 score: 7.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 29..78 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 27..83 score: 2.9
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 45..54 scor
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 29..77 score: 2.
None	No IPR available	PANTHER	PTHR22937	RING FINGER CONTAINING PROTEIN	coord: 12..163 score: 8.0
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 25..87 score: 1.43