CSPI02G00650.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI02G00650.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 402175 .. 402591 (-)
Sequence length288
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTCCCTAGTTGGAATGCTCGGGGTTTGGAGAGCCTTCGAGCATTCAGAGCCGTAAGTGATTTGATCCGTTCCAAAAATTCCAGTATTATGTTTTTCTCGACAAAAAGCAGAGAGGAAGTCACTAATCAGATCAAGATCGTGGGTAATTTTCCTGGTTTCTTTAAGTCAAAATGGTTCCATAAAAAGGCACCTTTAAGAAAGGAACAATACGAAACAAAGAGACGACAGATGCAAACGGTTAATGATTCGAGGATCCTTTTATCTTGAAAAGAACTTTTATTGACTATTCTTCTCCCTTCTTCTTGCCCAAGTTCTGATAATACTGGAGCTGTTAATGAGAGTATCTCCCCAAAAGCTGATGCTATAATGGATTCTATGCTCTTTTCTCCCAATGTGAGCAGTGAGCACTGA

mRNA sequence

ATGAATCTCCCTAGTTGGAATGCTCGGGGTTTGGAGAGCCTTCGAGCATTCAGAGCCGTAAGTGATTTGATCCGTTCCAAAAATTCCAGTATTATGTTTTTCTCGACAAAAAGCAGAGAGGAAGTCACTAATCAGATCAAGATCGTGGAACTTTTATTGACTATTCTTCTCCCTTCTTCTTGCCCAAGTTCTGATAATACTGGAGCTGTTAATGAGAGTATCTCCCCAAAAGCTGATGCTATAATGGATTCTATGCTCTTTTCTCCCAATGTGAGCAGTGAGCACTGA

Coding sequence (CDS)

ATGAATCTCCCTAGTTGGAATGCTCGGGGTTTGGAGAGCCTTCGAGCATTCAGAGCCGTAAGTGATTTGATCCGTTCCAAAAATTCCAGTATTATGTTTTTCTCGACAAAAAGCAGAGAGGAAGTCACTAATCAGATCAAGATCGTGGAACTTTTATTGACTATTCTTCTCCCTTCTTCTTGCCCAAGTTCTGATAATACTGGAGCTGTTAATGAGAGTATCTCCCCAAAAGCTGATGCTATAATGGATTCTATGCTCTTTTCTCCCAATGTGAGCAGTGAGCACTGA
Homology
[Close]
BLAST of CSPI02G00650.1 vs. TrEMBL
Match: A0A0A0LFT0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000670 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-41
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSREEVTNQIKIVELLLTILLPSS 60
          MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKS EEV NQIKI+ELLLTILLPSS
Sbjct: 1  MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSGEEVANQIKIMELLLTILLPSS 60

Query: 61 CPSSDNTGAVNESISPKADAIMDSMLFSPNVSSEH 96
          CPS DNTGAVNESISPKADAIMDSMLFSPNVSSEH
Sbjct: 61 CPSCDNTGAVNESISPKADAIMDSMLFSPNVSSEH 95

[Close]
BLAST of CSPI02G00650.1 vs. NCBI nr
Match: gi|700205439|gb|KGN60558.1| (hypothetical protein Csa_2G000670 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 4.1e-41
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSREEVTNQIKIVELLLTILLPSS 60
          MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKS EEV NQIKI+ELLLTILLPSS
Sbjct: 1  MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSGEEVANQIKIMELLLTILLPSS 60

Query: 61 CPSSDNTGAVNESISPKADAIMDSMLFSPNVSSEH 96
          CPS DNTGAVNESISPKADAIMDSMLFSPNVSSEH
Sbjct: 61 CPSCDNTGAVNESISPKADAIMDSMLFSPNVSSEH 95

The following BLAST results are available for this feature:
BLAST of CSPI02G00650.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G00650.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFT0_CUCSA2.8e-4195.79Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000670 PE=4 SV=1[more]
BLAST of CSPI02G00650.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G00650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205439|gb|KGN60558.1|4.1e-4195.79hypothetical protein Csa_2G000670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G00650CSPI02G00650gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G00650.1CSPI02G00650.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G00650.1.cds2CSPI02G00650.1.cds2CDS
CSPI02G00650.1.cds1CSPI02G00650.1.cds1CDS