CSPI01G30600.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G30600.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Gamma-tubulin complex component
Location	Chr1 : 25097798 .. 25101074 (-)
Sequence length	873

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCCGAAACCACCTTTTTCACTGTGTCTACCCTTTCGAGACCTCCCTCTTTTTCCTTCTGCTTTGGCCAATGCAGCCTCTCAGGCGAGACTAAACCCCTACTGCAGCCAACGACGACCAAAGAAAGACCCTTACAGCTCCTCTTCCGGTGCGGACCGGCTGTGTCAACCCGATCTGCACTCTACTTTTGTTTCTTCATCCAGCAACAACATTATACGACGCCTCTTTTGGTGAACAACCGCCACCAGCTTTGTTTTCTTTTATTTCGACCATTTGGGCATGTTCCAGCAAGTGTTCAAGTCCATTTTGGTAAGCTTCATTGGATAAAAACACTCTTTCGAACTAGTTTAAGGTTCTCTATATTTGTCTAATGCTAATTCGGATTAATTTTGGAATTATTTGGACATTTAAGCACCCAAGTCCGTTAGGGTGTTGGACCTCTATTTAGACCCTTTTGAATTAACTTAGGGTGCTGTAAGTTAGTTTCAAAGTATTGGAGAGGTTGATGGCCTTGGGAAAAATCAGCTGGGGCCGACAGAGAGGTCGGTGGCCATGAATAAATCAATTAGGGGCGATAGAGACCGTCGGTGGTCGTGGATGAAGTCGATGTGGTCGACAGAGCGTTGATGGTTCAATGTCAGCATGAATTTTGGGTTCACTATTTGTTGTTTTAATGGCCTTATTTTTAGGGTTGTGTAACGTAATGACATCCTTTGAATTGTCTTCAGTACTTGTTTTTACTTTAAGTTTCTCAATGTTCTTTAATGGGATCTTAAATCAAGTTTTTAGTGTTGTTATAACAAATAGTTGTTCTTCCTACGTTCTCATCTATTTCAAAATGACATTAGCATGCATGTAGTAAAGGTCATAGTTAGTCAAGATTCAAAAAGTTGCGTCAAAACATCTCTCCTTCTCTTTATGATACTCTCTTCATTCTTGTTTGTTAGTTCAGTGGTTATCATAGAGTTCTGTAATTCCAAAGAGAGCAAAAATGTTACACGAACTTCTGCTTGCTCTACTGGGTTACACCGGCGATCTGATAATCGATGAAAGAGAGCACTACAATTCCCTAGGGTTAGATAACTTACTTGTTGATGCCCCCATTTCTGGCGAACCCACGTTCAAGCTCGCCTCTGATATTTCCTTTCTTGAACCGAGCGAAAGGTACTCCCACAAACCCACTTCAAATGGATTCTCTTATATACATTGTCGATGATTGTTTTCTATCTTTGGATTCAGGGATCTAATTCAGAGGATCATTGTGTTAGGATTTTACTACAGAGAGCTTGATCGTTTTGCTACAAAGTCTAGGAATTTGAGTTGGATTCGTTCAGGTAATGAGTCTTCTTTAGCCAATTCGACGGAGTCGTCTAAAGATAAAATCGAAAACCCTAGTGTGTACAGGAGGGCCATAGCTAATGGCATTGTAGAGATACTGTCTATTTATAGATCTGCTGTGCTTCATGTGGAGCAGAAACTGTTGTCTGAAACGGTGCCGATTTTGGCAATAGTCACCCAGGGCCTCGATAAGGTGGGTTCTGAGATGTTTAACCTTTTTTCTGTAGGTAATTCTGTTGTCTAAGCGTTTACTGTATTGATCAATGGGTTTCTTTACATTATGCTATAAATTTGACTTGTTTATTGATTGTATCGTAGTTCTTTGTTCTTTTTCCACCTCTGCACCAACTCATTCGTGAGATTGAGCGTGATGATATTCGAGGTGGCCAGCTACTTAATCTTCTACACAAACGTTGTCACTGTGGCGTGCCTGAATTGCAAACTTGCATTCAAAGGTATTCAAGTCATCTCTTTCTTGTACGGAAAAGAAAAAAAAATCTCATATGAAAAGTTTGATTCATCATACCAGTGATTTCTCTTTATGCATTTGTTAAGATGGTATCAGTTATACACTCTAGAAAGAATGAGCTTTCTATTAACAAAACATACTATGGTAGAAGTCATTGGAATCTAAGATCAATGAGTACCTTATACATTGAATGAGATAAAAATAAAATGAAAAAGTGACTAGGGAATTGAAAAGGAGAAGAAGCATAAGAAAGAAGGAATTCATTCTCTGAGGTCTTGCTATCCATATCCTATGTTCATTGTTGTATTTAATAGTGAAATTTTAGAAGTTCGTCCACGGCCTGGTATTTCAATTCATTAGGAGGGACCGGAGGGTGTTCACTGGTTGGAAATTGCTATGTTCATCACTAGCCTGAAAGAAATTGTATGAGCTAAATGTCCATCAATCCATATAGAACCTCTTAAATGAACATTTAAATTGTTTATTCTTCATTGTAGATCATGTGGCAGAATTACCTTGCTAGCGACGTTTTATTGGAAGTTCATGCTTAATTTATTTAAACATTATTTTGCTTTTCTTCCTATTTTGCCCTCTGCCAAAAGAATAGGCTCCTTTGGCATGGTCATCAGGTAATGTACAATCAACTAGCATCATGGATGGTTTATGGGCTTCTTCAAGATAAGCATGGAGAATTTTTCATCAGAAGGTAACGGCACTAAGAACTGTTATATCTTATTATAGCAAACATGGCCTAGATTGTGAATATATTGTCTCGGGCTCTCAGTTGATTATAGTTGAACACAATTTGCGTTCAAAGATCGCGTACAGTCTACATTGACAGATTATTTGGTGGAGGGCTGCCATAATTTCTTAATAAATATAGTGGACATTTGGTTAGGCCTTTGTAGACTATCTTGTTATGGTATCTAAGAATTGATGGTTTTATGGATGTATTTAGGATTTTGCTTGATGGATATATTCTGGTATTCACCAGTAATAGAAATCTTGTTCAGTGAAAAATCTATGCAGTTGATATGGAGGAATTTTCATATTCGAGAAATACGATCTTCTTATCTATTATAATTCTTTTATTGTCTTAGTAGAGTATAAAAGGTTCCAGGCAAGTTTAACGGAGAAGGCTTAGAAGGAGAAAGGAAACAATGAACCAGCTGTTTAGAGAATAAGTCACGGATGATCAATCTTGATTTAATTTTTCCTCTTTACATTCTTTGGTTGCATTTGATAACTTTTACAATCTAGAAATGCATGATTCATTTTGTGATCATCAAACTGCTCAGGCAAGATGACAGGGAGACTAATCAAGGCTCATCCGTACAAGATATGTCAGAGAAGTTAGGACGCTTGTCAACTGATGAATCTTTGACTGATTGGCACTTGGGATTTCACATTTATCTGGTACATTCATTGCCACGCCTTCTACCAATATTTACTGGTTTTTTTCCTGGTTAG

mRNA sequence

ATGTTACACGAACTTCTGCTTGCTCTACTGGGTTACACCGGCGATCTGATAATCGATGAAAGAGAGCACTACAATTCCCTAGGGTTAGATAACTTACTTGTTGATGCCCCCATTTCTGGCGAACCCACGTTCAAGCTCGCCTCTGATATTTCCTTTCTTGAACCGAGCGAAAGGGATCTAATTCAGAGGATCATTGTGTTAGGATTTTACTACAGAGAGCTTGATCGTTTTGCTACAAAGTCTAGGAATTTGAGTTGGATTCGTTCAGGTAATGAGTCTTCTTTAGCCAATTCGACGGAGTCGTCTAAAGATAAAATCGAAAACCCTAGTGTGTACAGGAGGGCCATAGCTAATGGCATTGTAGAGATACTGTCTATTTATAGATCTGCTGTGCTTCATGTGGAGCAGAAACTGTTGTCTGAAACGGTGCCGATTTTGGCAATAGTCACCCAGGGCCTCGATAAGTTCTTTGTTCTTTTTCCACCTCTGCACCAACTCATTCGTGAGATTGAGCGTGATGATATTCGAGGTGGCCAGCTACTTAATCTTCTACACAAACGTTGTCACTGTGGCGTGCCTGAATTGCAAACTTGCATTCAAAGGCTCCTTTGGCATGGTCATCAGGTAATGTACAATCAACTAGCATCATGGATGGTTTATGGGCTTCTTCAAGATAAGCATGGAGAATTTTTCATCAGAAGGCAAGATGACAGGGAGACTAATCAAGGCTCATCCGTACAAGATATGTCAGAGAAGTTAGGACGCTTGTCAACTGATGAATCTTTGACTGATTGGCACTTGGGATTTCACATTTATCTGGTACATTCATTGCCACGCCTTCTACCAATATTTACTGGTTTTTTTCCTGGTTAG

Coding sequence (CDS)

ATGTTACACGAACTTCTGCTTGCTCTACTGGGTTACACCGGCGATCTGATAATCGATGAAAGAGAGCACTACAATTCCCTAGGGTTAGATAACTTACTTGTTGATGCCCCCATTTCTGGCGAACCCACGTTCAAGCTCGCCTCTGATATTTCCTTTCTTGAACCGAGCGAAAGGGATCTAATTCAGAGGATCATTGTGTTAGGATTTTACTACAGAGAGCTTGATCGTTTTGCTACAAAGTCTAGGAATTTGAGTTGGATTCGTTCAGGTAATGAGTCTTCTTTAGCCAATTCGACGGAGTCGTCTAAAGATAAAATCGAAAACCCTAGTGTGTACAGGAGGGCCATAGCTAATGGCATTGTAGAGATACTGTCTATTTATAGATCTGCTGTGCTTCATGTGGAGCAGAAACTGTTGTCTGAAACGGTGCCGATTTTGGCAATAGTCACCCAGGGCCTCGATAAGTTCTTTGTTCTTTTTCCACCTCTGCACCAACTCATTCGTGAGATTGAGCGTGATGATATTCGAGGTGGCCAGCTACTTAATCTTCTACACAAACGTTGTCACTGTGGCGTGCCTGAATTGCAAACTTGCATTCAAAGGCTCCTTTGGCATGGTCATCAGGTAATGTACAATCAACTAGCATCATGGATGGTTTATGGGCTTCTTCAAGATAAGCATGGAGAATTTTTCATCAGAAGGCAAGATGACAGGGAGACTAATCAAGGCTCATCCGTACAAGATATGTCAGAGAAGTTAGGACGCTTGTCAACTGATGAATCTTTGACTGATTGGCACTTGGGATTTCACATTTATCTGGTACATTCATTGCCACGCCTTCTACCAATATTTACTGGTTTTTTTCCTGGTTAG

Homology

[Close]

BLAST of CSPI01G30600.1 vs. Swiss-Prot
Match: GACP4_ARATH (Gamma-tubulin complex component 4 OS=Arabidopsis thaliana GN=GCP4 PE=2 SV=2)

HSP 1 Score: 390.2 bits (1001), Expect = 2.0e-107
Identity = 204/289 (70.59%), Postives = 238/289 (82.35%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           MLHELLLALLG+TGDLI+DERE   +LGL     D+P+S E TFKLA DISF+EPSERDL
Sbjct: 1   MLHELLLALLGFTGDLIVDEREQRKTLGLA-FNSDSPLSDECTFKLAPDISFIEPSERDL 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNE-SSLANSTESSKD-KIENPSVYRRAIAN 120
           I+R+I LGFYYRELDRFA KSRNLSWIRS      L  + E SK  + + PSVYRRAIAN
Sbjct: 61  IERLIKLGFYYRELDRFAKKSRNLSWIRSVTSVHPLERADELSKQSREKKPSVYRRAIAN 120

Query: 121 GIVEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGG 180
           GI EILS+YRSAVLH+EQKLL+ET PILA VT+GL+KFFVLFPPL+++I EIERDDIRGG
Sbjct: 121 GIGEILSVYRSAVLHIEQKLLAETTPILATVTEGLNKFFVLFPPLYEVILEIERDDIRGG 180

Query: 181 QLLNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDR 240
           QLLN+L+KRCHCGVPEL+TC+QRLLW+GHQVMYNQLA+WMVYG+LQD HGEFFI+RQDD 
Sbjct: 181 QLLNVLNKRCHCGVPELRTCLQRLLWNGHQVMYNQLAAWMVYGILQDPHGEFFIKRQDDG 240

Query: 241 ETNQGSSVQDMSEKLGRLSTDE-SLTDWHLGFHIYLVHSLPRLLPIFTG 287
           + +  SS +++SEKL R S  E SLTDWH GFHI L   LP  +P+  G
Sbjct: 241 DLDHRSSQEEVSEKLARTSVHETSLTDWHSGFHISL-DMLPDYIPMRLG 287

[Close]

BLAST of CSPI01G30600.1 vs. Swiss-Prot
Match: GCP4_MEDTR (Gamma-tubulin complex component 4 homolog OS=Medicago truncatula GN=85P PE=2 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 4.9e-106
Identity = 195/284 (68.66%), Postives = 231/284 (81.34%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           MLHELLLALLGYTGDLIID R++       NL  + PIS E TFKLA DISF++PS+R+L
Sbjct: 1   MLHELLLALLGYTGDLIIDRRDN-------NLSANTPISDECTFKLAPDISFIDPSDREL 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120
           I+RII LGFYYREL+RF+ KSRNL+WIRS N + L N         E PSVYRRA+ANGI
Sbjct: 61  IERIITLGFYYRELERFSAKSRNLNWIRSENANPLENK--------EKPSVYRRALANGI 120

Query: 121 VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180
           VEIL++Y S++LH+EQ LLSET+PILA VTQGL+KFF L PPL++LI +IER DIRGG+L
Sbjct: 121 VEILAVYSSSILHIEQLLLSETMPILATVTQGLNKFFSLLPPLYELILKIERGDIRGGEL 180

Query: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240
           LNLLHK+CHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYG+L+D+HGEFFI RQ+ R+ 
Sbjct: 181 LNLLHKKCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGILEDRHGEFFISRQEGRDV 240

Query: 241 NQGSSVQDMSEKLGRLST-DESLTDWHLGFHIYLVHSLPRLLPI 284
              SS Q++SEKL RLST D SL+DWH+GFHI L   LP  +P+
Sbjct: 241 ENSSSHQEISEKLSRLSTADASLSDWHMGFHISL-DMLPEYIPM 268

[Close]

BLAST of CSPI01G30600.1 vs. Swiss-Prot
Match: GCP4_HUMAN (Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-22
Identity = 75/254 (29.53%), Postives = 124/254 (48.82%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           M+HELLLAL GY G +    +                 SG    +++ D  FL PSE  +
Sbjct: 1   MIHELLLALSGYPGSIFTWNKR----------------SG---LQVSQDFPFLHPSETSV 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120
           + R+  LG  Y     F  +                +   S + +     +Y RA   G+
Sbjct: 61  LNRLCRLGTDYIRFTEFIEQYTG--------HVQQQDHHPSQQGQGGLHGIYLRAFCTGL 120

Query: 121 VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180
             +L  YR A+L +EQ+ L +    ++ V   LD+F +LFP +  ++ +I+   I G Q+
Sbjct: 121 DSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQI 180

Query: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240
           L  ++K    G+P +++ ++++L   H VMY QL++WM++GLL D+H EFFI +Q     
Sbjct: 181 LETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFI-KQGPSSG 226

Query: 241 NQGSSVQDMSEKLG 255
           N  +  ++  E LG
Sbjct: 241 NVSAQPEEDEEDLG 226

[Close]

BLAST of CSPI01G30600.1 vs. Swiss-Prot
Match: GCP4_MOUSE (Gamma-tubulin complex component 4 OS=Mus musculus GN=Tubgcp4 PE=1 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 5.7e-22
Identity = 73/254 (28.74%), Postives = 126/254 (49.61%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           M+HELLLAL GY G +    +                 SG    +++ D  FL PSE  +
Sbjct: 1   MIHELLLALSGYPGSIFTWNKR----------------SG---LQVSQDFPFLHPSETSV 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120
           + R+  LG  Y     F      +       +    +  +  +  +    +Y RA   G+
Sbjct: 61  LNRLCRLGTDYIRFTEF------IEQYTGHVQQQDHHPPQQGQGGLHG--IYLRAFCTGL 120

Query: 121 VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180
             +L  YR A+L +EQ+ L++    ++ V   LD+F +LFP +  ++ +I+   I G Q+
Sbjct: 121 DSVLQPYRQALLDLEQEFLADPHLSISHVNYSLDQFQLLFPSVMVVVEQIKSQKIHGCQI 180

Query: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240
           L  ++K    G+P +++ ++++L   H VMY QL++WM++GLL D+H EFFI +Q     
Sbjct: 181 LETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFI-KQGPSSG 226

Query: 241 NQGSSVQDMSEKLG 255
              + +++  E LG
Sbjct: 241 TLSAQLEEDEEDLG 226

[Close]

BLAST of CSPI01G30600.1 vs. TrEMBL
Match: A0A0A0LZT6_CUCSA (Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_1G616270 PE=3 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 1.6e-151
Identity = 272/273 (99.63%), Postives = 272/273 (99.63%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL
Sbjct: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120
           IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI
Sbjct: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120

Query: 121 VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180
           VEILSIYRSAVLHVEQKLLSE VPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL
Sbjct: 121 VEILSIYRSAVLHVEQKLLSEMVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180

Query: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240
           LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET
Sbjct: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240

Query: 241 NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL 274
           NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL
Sbjct: 241 NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL 273

[Close]

BLAST of CSPI01G30600.1 vs. TrEMBL
Match: A0A061DQM0_THECC (Gamma-tubulin complex component OS=Theobroma cacao GN=TCM_004669 PE=3 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 3.2e-120
Identity = 220/284 (77.46%), Postives = 250/284 (88.03%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           MLHELLLAL+GYTGDLIIDEREH+ SLGL +L  DAPIS + +FKLASDISF++ SERDL
Sbjct: 1   MLHELLLALVGYTGDLIIDEREHHKSLGL-HLSPDAPISDQRSFKLASDISFIDSSERDL 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120
           I+R+I LGFYYRELDRFATKSRNLSWIRS + S L  +   SK K E PSVYRRAIANG+
Sbjct: 61  IERLITLGFYYRELDRFATKSRNLSWIRSADVSPLERAAGLSKPKTEKPSVYRRAIANGL 120

Query: 121 VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180
           VEILS+YRSAVL +EQKLLSET+PILA VTQGL+KFFV+ PPL++LI EIERDDIRGGQL
Sbjct: 121 VEILSVYRSAVLQIEQKLLSETMPILATVTQGLNKFFVILPPLYELILEIERDDIRGGQL 180

Query: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240
           LNLLHKRCHCGVPELQ CIQRLLWHGHQV+YNQLASWMVYG+LQD+HGEFFIRRQ+DR+ 
Sbjct: 181 LNLLHKRCHCGVPELQACIQRLLWHGHQVLYNQLASWMVYGILQDQHGEFFIRRQEDRDV 240

Query: 241 NQGSSVQDMSEKLGRLSTDE-SLTDWHLGFHIYLVHSLPRLLPI 284
           + GSS+ DMSEKL RLSTD+ SLTDWHLGFHI+L   LP  +P+
Sbjct: 241 DYGSSISDMSEKLARLSTDDSSLTDWHLGFHIFL-DMLPEYIPM 282

[Close]

BLAST of CSPI01G30600.1 vs. TrEMBL
Match: A0A061DQV8_THECC (Gamma-tubulin complex component OS=Theobroma cacao GN=TCM_004669 PE=3 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 3.2e-120
Identity = 220/284 (77.46%), Postives = 250/284 (88.03%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           MLHELLLAL+GYTGDLIIDEREH+ SLGL +L  DAPIS + +FKLASDISF++ SERDL
Sbjct: 1   MLHELLLALVGYTGDLIIDEREHHKSLGL-HLSPDAPISDQRSFKLASDISFIDSSERDL 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120
           I+R+I LGFYYRELDRFATKSRNLSWIRS + S L  +   SK K E PSVYRRAIANG+
Sbjct: 61  IERLITLGFYYRELDRFATKSRNLSWIRSADVSPLERAAGLSKPKTEKPSVYRRAIANGL 120

Query: 121 VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180
           VEILS+YRSAVL +EQKLLSET+PILA VTQGL+KFFV+ PPL++LI EIERDDIRGGQL
Sbjct: 121 VEILSVYRSAVLQIEQKLLSETMPILATVTQGLNKFFVILPPLYELILEIERDDIRGGQL 180

Query: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240
           LNLLHKRCHCGVPELQ CIQRLLWHGHQV+YNQLASWMVYG+LQD+HGEFFIRRQ+DR+ 
Sbjct: 181 LNLLHKRCHCGVPELQACIQRLLWHGHQVLYNQLASWMVYGILQDQHGEFFIRRQEDRDV 240

Query: 241 NQGSSVQDMSEKLGRLSTDE-SLTDWHLGFHIYLVHSLPRLLPI 284
           + GSS+ DMSEKL RLSTD+ SLTDWHLGFHI+L   LP  +P+
Sbjct: 241 DYGSSISDMSEKLARLSTDDSSLTDWHLGFHIFL-DMLPEYIPM 282

[Close]

BLAST of CSPI01G30600.1 vs. TrEMBL
Match: W9QMJ5_9ROSA (Gamma-tubulin complex component OS=Morus notabilis GN=L484_011092 PE=3 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 7.1e-120
Identity = 223/275 (81.09%), Postives = 245/275 (89.09%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           MLHE+LLALLGYTGDLIIDER+H NSLG+  L  DAPI+ EPTFKLA DISFL+PSERDL
Sbjct: 1   MLHEVLLALLGYTGDLIIDERDHRNSLGIA-LSPDAPIADEPTFKLAPDISFLQPSERDL 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKI-ENPSVYRRAIANG 120
           I+RI+ LGFYYRELDRFATKSRNLSWIRS N S LA  +E SK K  +  SVYRRAIANG
Sbjct: 61  IERIVTLGFYYRELDRFATKSRNLSWIRSENASPLATISELSKGKTGKKQSVYRRAIANG 120

Query: 121 IVEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQ 180
           IVEILS+YRSAVLH+EQKLLSETVPILA VTQGL+KFFVL PPL++L+ EIER+DIRGGQ
Sbjct: 121 IVEILSVYRSAVLHIEQKLLSETVPILATVTQGLNKFFVLLPPLYELVLEIERNDIRGGQ 180

Query: 181 LLNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRE 240
           LLNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYG LQD++GEFFIRRQ+DR+
Sbjct: 181 LLNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGTLQDQYGEFFIRRQEDRD 240

Query: 241 TNQGSSVQDMSEKLGRLSTDE-SLTDWHLGFHIYL 274
              GSS  D+SEKL RLSTD+ SLTDWHLGFHIYL
Sbjct: 241 VEHGSSHSDISEKLARLSTDDTSLTDWHLGFHIYL 274

[Close]

BLAST of CSPI01G30600.1 vs. TrEMBL
Match: M5VMI9_PRUPE (Gamma-tubulin complex component OS=Prunus persica GN=PRUPE_ppa001912mg PE=3 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 9.3e-120
Identity = 219/274 (79.93%), Postives = 244/274 (89.05%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           MLHELLLALLGYTGDLIIDEREH  SLG     VDAPIS EPTFKLA DISF++PSERDL
Sbjct: 1   MLHELLLALLGYTGDLIIDEREHSKSLG-----VDAPISDEPTFKLAPDISFIQPSERDL 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120
           I++I  LGFYYRELDRF+ +SRNLSWIRS N SSLA+  + SK K E PSVYRRAIANGI
Sbjct: 61  IEKITTLGFYYRELDRFSVRSRNLSWIRSANASSLAS--DLSKPKAEKPSVYRRAIANGI 120

Query: 121 VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180
           VEILS+YRSAVLH+EQKLLSETVPILA VTQGL+KFFVL PPL++L+ EIERDDIRGGQL
Sbjct: 121 VEILSVYRSAVLHIEQKLLSETVPILATVTQGLNKFFVLLPPLYELVLEIERDDIRGGQL 180

Query: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240
           LNLLHKRCHCGVPELQTCIQRLLWH HQV+YNQLA+WMVYG+LQD+HGEFFIRRQ+D++ 
Sbjct: 181 LNLLHKRCHCGVPELQTCIQRLLWHAHQVLYNQLAAWMVYGILQDQHGEFFIRRQEDKDV 240

Query: 241 NQGSSVQDMSEKLGRLSTDE-SLTDWHLGFHIYL 274
             GSS +D+SEKL R+STD+ SLTDWHLGFHIYL
Sbjct: 241 EHGSSHRDISEKLARMSTDDTSLTDWHLGFHIYL 267

[Close]

BLAST of CSPI01G30600.1 vs. TAIR10
Match: AT3G53760.1 (AT3G53760.1 GAMMA-TUBULIN COMPLEX PROTEIN 4)

HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-108
Identity = 204/289 (70.59%), Postives = 238/289 (82.35%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           MLHELLLALLG+TGDLI+DERE   +LGL     D+P+S E TFKLA DISF+EPSERDL
Sbjct: 1   MLHELLLALLGFTGDLIVDEREQRKTLGLA-FNSDSPLSDECTFKLAPDISFIEPSERDL 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNE-SSLANSTESSKD-KIENPSVYRRAIAN 120
           I+R+I LGFYYRELDRFA KSRNLSWIRS      L  + E SK  + + PSVYRRAIAN
Sbjct: 61  IERLIKLGFYYRELDRFAKKSRNLSWIRSVTSVHPLERADELSKQSREKKPSVYRRAIAN 120

Query: 121 GIVEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGG 180
           GI EILS+YRSAVLH+EQKLL+ET PILA VT+GL+KFFVLFPPL+++I EIERDDIRGG
Sbjct: 121 GIGEILSVYRSAVLHIEQKLLAETTPILATVTEGLNKFFVLFPPLYEVILEIERDDIRGG 180

Query: 181 QLLNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDR 240
           QLLN+L+KRCHCGVPEL+TC+QRLLW+GHQVMYNQLA+WMVYG+LQD HGEFFI+RQDD 
Sbjct: 181 QLLNVLNKRCHCGVPELRTCLQRLLWNGHQVMYNQLAAWMVYGILQDPHGEFFIKRQDDG 240

Query: 241 ETNQGSSVQDMSEKLGRLSTDE-SLTDWHLGFHIYLVHSLPRLLPIFTG 287
           + +  SS +++SEKL R S  E SLTDWH GFHI L   LP  +P+  G
Sbjct: 241 DLDHRSSQEEVSEKLARTSVHETSLTDWHSGFHISL-DMLPDYIPMRLG 287

[Close]

BLAST of CSPI01G30600.1 vs. NCBI nr
Match: gi|778663742|ref|XP_011660150.1| (PREDICTED: gamma-tubulin complex component 4 homolog [Cucumis sativus])

HSP 1 Score: 543.5 bits (1399), Expect = 2.2e-151
Identity = 272/273 (99.63%), Postives = 272/273 (99.63%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL
Sbjct: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120
           IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI
Sbjct: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120

Query: 121 VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180
           VEILSIYRSAVLHVEQKLLSE VPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL
Sbjct: 121 VEILSIYRSAVLHVEQKLLSEMVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180

Query: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240
           LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET
Sbjct: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240

Query: 241 NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL 274
           NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL
Sbjct: 241 NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL 273

[Close]

BLAST of CSPI01G30600.1 vs. NCBI nr
Match: gi|700211413|gb|KGN66509.1| (hypothetical protein Csa_1G616270 [Cucumis sativus])

HSP 1 Score: 543.5 bits (1399), Expect = 2.2e-151
Identity = 272/273 (99.63%), Postives = 272/273 (99.63%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL
Sbjct: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120
           IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI
Sbjct: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120

Query: 121 VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180
           VEILSIYRSAVLHVEQKLLSE VPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL
Sbjct: 121 VEILSIYRSAVLHVEQKLLSEMVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180

Query: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240
           LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET
Sbjct: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240

Query: 241 NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL 274
           NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL
Sbjct: 241 NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL 273

[Close]

BLAST of CSPI01G30600.1 vs. NCBI nr
Match: gi|659130829|ref|XP_008465374.1| (PREDICTED: gamma-tubulin complex component 4 homolog [Cucumis melo])

HSP 1 Score: 542.3 bits (1396), Expect = 5.0e-151
Identity = 271/273 (99.27%), Postives = 273/273 (100.00%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           MLHELLLALLGYTGDLIIDEREHYNSLGL+NLLVDAPISGEPTFKLASDISFLEPSERDL
Sbjct: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLNNLLVDAPISGEPTFKLASDISFLEPSERDL 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120
           IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI
Sbjct: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120

Query: 121 VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180
           VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDI+GGQL
Sbjct: 121 VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIQGGQL 180

Query: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240
           LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET
Sbjct: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240

Query: 241 NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL 274
           NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL
Sbjct: 241 NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL 273

[Close]

BLAST of CSPI01G30600.1 vs. NCBI nr
Match: gi|659099008|ref|XP_008450387.1| (PREDICTED: gamma-tubulin complex component 4 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 537.3 bits (1383), Expect = 1.6e-149
Identity = 270/273 (98.90%), Postives = 271/273 (99.27%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           MLHELLLALLGYTGDLIIDEREHYNSLGL+NLLVDAPISGEPTFKLASDISFLEPSERDL
Sbjct: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLNNLLVDAPISGEPTFKLASDISFLEPSERDL 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120
           IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLA STESSKDKIENPSVYRRAIANGI
Sbjct: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLAISTESSKDKIENPSVYRRAIANGI 120

Query: 121 VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180
           VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLI EIERDDIRGGQL
Sbjct: 121 VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLICEIERDDIRGGQL 180

Query: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240
           LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET
Sbjct: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240

Query: 241 NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL 274
           NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL
Sbjct: 241 NQGSSVQDMSEKLGRLSTDESLTDWHLGFHIYL 273

[Close]

BLAST of CSPI01G30600.1 vs. NCBI nr
Match: gi|590719039|ref|XP_007050947.1| (Tubulin gamma complex-associated protein isoform 1 [Theobroma cacao])

HSP 1 Score: 439.5 bits (1129), Expect = 4.6e-120
Identity = 220/284 (77.46%), Postives = 250/284 (88.03%), Query Frame = 1


Query: 1   MLHELLLALLGYTGDLIIDEREHYNSLGLDNLLVDAPISGEPTFKLASDISFLEPSERDL 60
           MLHELLLAL+GYTGDLIIDEREH+ SLGL +L  DAPIS + +FKLASDISF++ SERDL
Sbjct: 1   MLHELLLALVGYTGDLIIDEREHHKSLGL-HLSPDAPISDQRSFKLASDISFIDSSERDL 60

Query: 61  IQRIIVLGFYYRELDRFATKSRNLSWIRSGNESSLANSTESSKDKIENPSVYRRAIANGI 120
           I+R+I LGFYYRELDRFATKSRNLSWIRS + S L  +   SK K E PSVYRRAIANG+
Sbjct: 61  IERLITLGFYYRELDRFATKSRNLSWIRSADVSPLERAAGLSKPKTEKPSVYRRAIANGL 120

Query: 121 VEILSIYRSAVLHVEQKLLSETVPILAIVTQGLDKFFVLFPPLHQLIREIERDDIRGGQL 180
           VEILS+YRSAVL +EQKLLSET+PILA VTQGL+KFFV+ PPL++LI EIERDDIRGGQL
Sbjct: 121 VEILSVYRSAVLQIEQKLLSETMPILATVTQGLNKFFVILPPLYELILEIERDDIRGGQL 180

Query: 181 LNLLHKRCHCGVPELQTCIQRLLWHGHQVMYNQLASWMVYGLLQDKHGEFFIRRQDDRET 240
           LNLLHKRCHCGVPELQ CIQRLLWHGHQV+YNQLASWMVYG+LQD+HGEFFIRRQ+DR+ 
Sbjct: 181 LNLLHKRCHCGVPELQACIQRLLWHGHQVLYNQLASWMVYGILQDQHGEFFIRRQEDRDV 240

Query: 241 NQGSSVQDMSEKLGRLSTDE-SLTDWHLGFHIYLVHSLPRLLPI 284
           + GSS+ DMSEKL RLSTD+ SLTDWHLGFHI+L   LP  +P+
Sbjct: 241 DYGSSISDMSEKLARLSTDDSSLTDWHLGFHIFL-DMLPEYIPM 282

The following BLAST results are available for this feature:

BLAST of CSPI01G30600.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GACP4_ARATH	2.0e-107	70.59	Gamma-tubulin complex component 4 OS=Arabidopsis thaliana GN=GCP4 PE=2 SV=2	[more]
GCP4_MEDTR	4.9e-106	68.66	Gamma-tubulin complex component 4 homolog OS=Medicago truncatula GN=85P PE=2 SV=...	[more]
GCP4_HUMAN	2.6e-22	29.53	Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1 SV=1	[more]
GCP4_MOUSE	5.7e-22	28.74	Gamma-tubulin complex component 4 OS=Mus musculus GN=Tubgcp4 PE=1 SV=2	[more]

BLAST of CSPI01G30600.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZT6_CUCSA	1.6e-151	99.63	Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_1G616270 PE=3 SV=1	[more]
A0A061DQM0_THECC	3.2e-120	77.46	Gamma-tubulin complex component OS=Theobroma cacao GN=TCM_004669 PE=3 SV=1	[more]
A0A061DQV8_THECC	3.2e-120	77.46	Gamma-tubulin complex component OS=Theobroma cacao GN=TCM_004669 PE=3 SV=1	[more]
W9QMJ5_9ROSA	7.1e-120	81.09	Gamma-tubulin complex component OS=Morus notabilis GN=L484_011092 PE=3 SV=1	[more]
M5VMI9_PRUPE	9.3e-120	79.93	Gamma-tubulin complex component OS=Prunus persica GN=PRUPE_ppa001912mg PE=3 SV=1	[more]

BLAST of CSPI01G30600.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G53760.1	1.1e-108	70.59	GAMMA-TUBULIN COMPLEX PROTEIN 4	[more]

BLAST of CSPI01G30600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778663742\|ref\|XP_011660150.1\|	2.2e-151	99.63	PREDICTED: gamma-tubulin complex component 4 homolog [Cucumis sativus]	[more]
gi\|700211413\|gb\|KGN66509.1\|	2.2e-151	99.63	hypothetical protein Csa_1G616270 [Cucumis sativus]	[more]
gi\|659130829\|ref\|XP_008465374.1\|	5.0e-151	99.27	PREDICTED: gamma-tubulin complex component 4 homolog [Cucumis melo]	[more]
gi\|659099008\|ref\|XP_008450387.1\|	1.6e-149	98.90	PREDICTED: gamma-tubulin complex component 4 homolog isoform X1 [Cucumis melo]	[more]
gi\|590719039\|ref\|XP_007050947.1\|	4.6e-120	77.46	Tubulin gamma complex-associated protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007259	GCP

Vocabulary: **Biological Process**
Term	Definition
GO:0000226	microtubule cytoskeleton organization
GO:0007020	microtubule nucleation

Vocabulary: **Cellular Component**
Term	Definition
GO:0000922	spindle pole
GO:0005815	microtubule organizing center

Vocabulary: **Molecular Function**
Term	Definition
GO:0043015	gamma-tubulin binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0007020	microtubule nucleation
biological_process	GO:0043622	cortical microtubule organization
biological_process	GO:0040007	growth
biological_process	GO:0009624	response to nematode
cellular_component	GO:0005815	microtubule organizing center
cellular_component	GO:0000922	spindle pole
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0045298	tubulin complex
molecular_function	GO:0043015	gamma-tubulin binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G30600	CSPI01G30600	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G30600.1	CSPI01G30600.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G30600.1.cds6	CSPI01G30600.1.cds6	CDS
CSPI01G30600.1.cds5	CSPI01G30600.1.cds5	CDS
CSPI01G30600.1.cds4	CSPI01G30600.1.cds4	CDS
CSPI01G30600.1.cds3	CSPI01G30600.1.cds3	CDS
CSPI01G30600.1.cds2	CSPI01G30600.1.cds2	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G30600.1.utr5p2	CSPI01G30600.1.utr5p2	five_prime_UTR
CSPI01G30600.1.utr5p1	CSPI01G30600.1.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007259	Gamma-tubulin complex component protein	PANTHER	PTHR19302	GAMMA TUBULIN COMPLEX PROTEIN	coord: 108..284 score: 1.4E-80coord: 40..92 score: 1.4E-80coord: 1..22 score: 1.4
IPR007259	Gamma-tubulin complex component protein	PFAM	PF04130	Spc97_Spc98	coord: 4..271 score: 2.3
None	No IPR available	PANTHER	PTHR19302:SF27	GAMMA-TUBULIN COMPLEX COMPONENT 4	coord: 1..22 score: 1.4E-80coord: 40..92 score: 1.4E-80coord: 108..284 score: 1.4