CSPI01G26000.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G26000.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 21377713 .. 21378322 (+)
Sequence length267
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTCCATCGGTTTCAGCTGCTTGTTCTTTCTGTCTCCGCCATCTTGGGTCGTCGGAATTTGGCAGAAGTTTCATGTTTCCGATCAATGCTTCAGATTCCGGTGCTCTAGTTTTCTTCATTTTCCTGCAAAATCAAGGTCCTTACTATCTTACATTACTGTTTTTTTTGTTTTCTTTTCACCAATGTCGTTTATTTATTTTTATTTTTTGTTTTTCTCTTTCCAAATGCTTAGAATGATGGTTTAAAAAACCACATTTCATCAAGTAGTTTCACTAAAGCTATGCTTTAGTCCTAATAGTTTTCTCACTTAGTGTTAAATTTATGGCATTTGAGTATGTGAAGTTTATGACAGTTTATGGCATTGAGTATGTTTACCTGAAAAACATGAATTTACCTTTTTGGTTCAATGATTTTGAGTTATTAGTAGTTATTTTGGTCCATAGCTTTCATTCAGTTCATTTGGGAAAGAGGCCAGGATATGGCTACGAGAGTTGGTTGAATTGACGATCGCCCAAGTTGGTGGAGGTGGTAAACTAGAGCTGTCAGTTGACAATGGTGCTTGGAGGTGGCAGTGGTGGTTGCAGTTGGCTGGCAAAGGGCAGTGA

mRNA sequence

ATGGAGTTCCATCGGTTTCAGCTGCTTGTTCTTTCTGTCTCCGCCATCTTGGGTCGTCGGAATTTGGCAGAAGTTTCATGTTTCCGATCAATGCTTCAGATTCCGCTTTCATTCAGTTCATTTGGGAAAGAGGCCAGGATATGGCTACGAGAGTTGGTTGAATTGACGATCGCCCAAGTTGGTGGAGGTGGTAAACTAGAGCTGTCAGTTGACAATGGTGCTTGGAGGTGGCAGTGGTGGTTGCAGTTGGCTGGCAAAGGGCAGTGA

Coding sequence (CDS)

ATGGAGTTCCATCGGTTTCAGCTGCTTGTTCTTTCTGTCTCCGCCATCTTGGGTCGTCGGAATTTGGCAGAAGTTTCATGTTTCCGATCAATGCTTCAGATTCCGCTTTCATTCAGTTCATTTGGGAAAGAGGCCAGGATATGGCTACGAGAGTTGGTTGAATTGACGATCGCCCAAGTTGGTGGAGGTGGTAAACTAGAGCTGTCAGTTGACAATGGTGCTTGGAGGTGGCAGTGGTGGTTGCAGTTGGCTGGCAAAGGGCAGTGA
Homology
[Close]
BLAST of CSPI01G26000.1 vs. TrEMBL
Match: A0A0A0LYX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568510 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-42
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1 

Query: 1  MEFHRFQLLVLSVSAILGRRNLAEVSCFRSMLQIPLSFSSFGKEARIWLRELVELTIAQV 60
          MEFHRFQLLVLSVSAILGRRNLAEVSCFRSMLQIPLSFSSFGKEA IWLRELVELTIAQV
Sbjct: 1  MEFHRFQLLVLSVSAILGRRNLAEVSCFRSMLQIPLSFSSFGKEAGIWLRELVELTIAQV 60

Query: 61 GGGGKLELSVDNGAWRWQWWLQLAGKGQ 89
          GGGGKLELSVDNGAWRWQWWLQLAGKGQ
Sbjct: 61 GGGGKLELSVDNGAWRWQWWLQLAGKGQ 88

[Close]
BLAST of CSPI01G26000.1 vs. NCBI nr
Match: gi|700210926|gb|KGN66022.1| (hypothetical protein Csa_1G568510 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-42
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1 

Query: 1  MEFHRFQLLVLSVSAILGRRNLAEVSCFRSMLQIPLSFSSFGKEARIWLRELVELTIAQV 60
          MEFHRFQLLVLSVSAILGRRNLAEVSCFRSMLQIPLSFSSFGKEA IWLRELVELTIAQV
Sbjct: 1  MEFHRFQLLVLSVSAILGRRNLAEVSCFRSMLQIPLSFSSFGKEAGIWLRELVELTIAQV 60

Query: 61 GGGGKLELSVDNGAWRWQWWLQLAGKGQ 89
          GGGGKLELSVDNGAWRWQWWLQLAGKGQ
Sbjct: 61 GGGGKLELSVDNGAWRWQWWLQLAGKGQ 88

The following BLAST results are available for this feature:
BLAST of CSPI01G26000.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G26000.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYX8_CUCSA1.8e-4298.86Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568510 PE=4 SV=1[more]
BLAST of CSPI01G26000.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G26000.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210926|gb|KGN66022.1|2.6e-4298.86hypothetical protein Csa_1G568510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G26000CSPI01G26000gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G26000.1CSPI01G26000.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G26000.1.cds1CSPI01G26000.1.cds1CDS
CSPI01G26000.1.cds2CSPI01G26000.1.cds2CDS