CSPI01G26000 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G26000
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 21377713 .. 21378322 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTCCATCGGTTTCAGCTGCTTGTTCTTTCTGTCTCCGCCATCTTGGGTCGTCGGAATTTGGCAGAAGTTTCATGTTTCCGATCAATGCTTCAGATTCCGGTGCTCTAGTTTTCTTCATTTTCCTGCAAAATCAAGGTCCTTACTATCTTACATTACTGTTTTTTTTGTTTTCTTTTCACCAATGTCGTTTATTTATTTTTATTTTTTGTTTTTCTCTTTCCAAATGCTTAGAATGATGGTTTAAAAAACCACATTTCATCAAGTAGTTTCACTAAAGCTATGCTTTAGTCCTAATAGTTTTCTCACTTAGTGTTAAATTTATGGCATTTGAGTATGTGAAGTTTATGACAGTTTATGGCATTGAGTATGTTTACCTGAAAAACATGAATTTACCTTTTTGGTTCAATGATTTTGAGTTATTAGTAGTTATTTTGGTCCATAGCTTTCATTCAGTTCATTTGGGAAAGAGGCCAGGATATGGCTACGAGAGTTGGTTGAATTGACGATCGCCCAAGTTGGTGGAGGTGGTAAACTAGAGCTGTCAGTTGACAATGGTGCTTGGAGGTGGCAGTGGTGGTTGCAGTTGGCTGGCAAAGGGCAGTGA

mRNA sequence

ATGGAGTTCCATCGGTTTCAGCTGCTTGTTCTTTCTGTCTCCGCCATCTTGGGTCGTCGGAATTTGGCAGAAGTTTCATGTTTCCGATCAATGCTTCAGATTCCGCTTTCATTCAGTTCATTTGGGAAAGAGGCCAGGATATGGCTACGAGAGTTGGTTGAATTGACGATCGCCCAAGTTGGTGGAGGTGGTAAACTAGAGCTGTCAGTTGACAATGGTGCTTGGAGGTGGCAGTGGTGGTTGCAGTTGGCTGGCAAAGGGCAGTGA

Coding sequence (CDS)

ATGGAGTTCCATCGGTTTCAGCTGCTTGTTCTTTCTGTCTCCGCCATCTTGGGTCGTCGGAATTTGGCAGAAGTTTCATGTTTCCGATCAATGCTTCAGATTCCGCTTTCATTCAGTTCATTTGGGAAAGAGGCCAGGATATGGCTACGAGAGTTGGTTGAATTGACGATCGCCCAAGTTGGTGGAGGTGGTAAACTAGAGCTGTCAGTTGACAATGGTGCTTGGAGGTGGCAGTGGTGGTTGCAGTTGGCTGGCAAAGGGCAGTGA
Homology
[Close]
BLAST of CSPI01G26000 vs. TrEMBL
Match: A0A0A0LYX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568510 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-42
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1 

Query: 1  MEFHRFQLLVLSVSAILGRRNLAEVSCFRSMLQIPLSFSSFGKEARIWLRELVELTIAQV 60
          MEFHRFQLLVLSVSAILGRRNLAEVSCFRSMLQIPLSFSSFGKEA IWLRELVELTIAQV
Sbjct: 1  MEFHRFQLLVLSVSAILGRRNLAEVSCFRSMLQIPLSFSSFGKEAGIWLRELVELTIAQV 60

Query: 61 GGGGKLELSVDNGAWRWQWWLQLAGKGQ 89
          GGGGKLELSVDNGAWRWQWWLQLAGKGQ
Sbjct: 61 GGGGKLELSVDNGAWRWQWWLQLAGKGQ 88

[Close]
BLAST of CSPI01G26000 vs. NCBI nr
Match: gi|700210926|gb|KGN66022.1| (hypothetical protein Csa_1G568510 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-42
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1 

Query: 1  MEFHRFQLLVLSVSAILGRRNLAEVSCFRSMLQIPLSFSSFGKEARIWLRELVELTIAQV 60
          MEFHRFQLLVLSVSAILGRRNLAEVSCFRSMLQIPLSFSSFGKEA IWLRELVELTIAQV
Sbjct: 1  MEFHRFQLLVLSVSAILGRRNLAEVSCFRSMLQIPLSFSSFGKEAGIWLRELVELTIAQV 60

Query: 61 GGGGKLELSVDNGAWRWQWWLQLAGKGQ 89
          GGGGKLELSVDNGAWRWQWWLQLAGKGQ
Sbjct: 61 GGGGKLELSVDNGAWRWQWWLQLAGKGQ 88

The following BLAST results are available for this feature:
BLAST of CSPI01G26000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G26000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYX8_CUCSA1.8e-4298.86Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568510 PE=4 SV=1[more]
BLAST of CSPI01G26000 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G26000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210926|gb|KGN66022.1|2.6e-4298.86hypothetical protein Csa_1G568510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G26000.1CSPI01G26000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G26000Csa1G568510Cucumber (Chinese Long) v2cpicuB001
CSPI01G26000CsaV3_1G038420Cucumber (Chinese Long) v3cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G26000Watermelon (97103) v1cpiwmB025
CSPI01G26000Cucurbita pepo (Zucchini)cpecpiB088
CSPI01G26000Cucurbita pepo (Zucchini)cpecpiB354
CSPI01G26000Cucurbita pepo (Zucchini)cpecpiB808
CSPI01G26000Bottle gourd (USVL1VR-Ls)cpilsiB059
CSPI01G26000Melon (DHL92) v3.6.1cpimedB036
CSPI01G26000Cucumber (Gy14) v2cgybcpiB002
CSPI01G26000Watermelon (97103) v2cpiwmbB045
CSPI01G26000Wax gourdcpiwgoB104
CSPI01G26000Cucumber (Gy14) v1cgycpiB034
CSPI01G26000Cucurbita maxima (Rimu)cmacpiB061
CSPI01G26000Cucurbita maxima (Rimu)cmacpiB107
CSPI01G26000Cucurbita moschata (Rifu)cmocpiB055
CSPI01G26000Cucurbita moschata (Rifu)cmocpiB086
CSPI01G26000Cucurbita moschata (Rifu)cmocpiB102
CSPI01G26000Melon (DHL92) v3.5.1cpimeB042
CSPI01G26000Watermelon (Charleston Gray)cpiwcgB049