CSPI01G20650.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G20650.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 16306003 .. 16306467 (-)
Sequence length234
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTGAATAAGAATCACAAACAACAGAACCAACTGAAATCCAAATCGAACAACGATACCGGCCGGGAAAATGAAGCCATGGATCCGACGACGAAGCTGTTGATTCGACAAGCAATTGTAAACGGCGGCGGCGGCGACGATGACAACGGCGGCAGAGCAGAAATTCGCGGCCCCTCGGAGGTTTTAGCCTTCACCAGATCAGTCAACAAAACTGACTCTTCTCTCGAATGATGGTTTTGTGTTCTCTTTGTTTTGTTTTGATTTTTTAAATTTATGCTTAGAAACAAACACTAATTACCATAATGCTTAATATAATGTTTTAAAAAGAATAATAATAATAAAAGAAGACATATCACATATGAAGAAGAAAGAAAACATGGTTTAAATGTTTAGGTCCAAGTAAATGTTGATGTGCCCAAATCCTTTATCTTTTCATTTAAGTTTGACCAAAAACAAAAGTGG

mRNA sequence

ATGGATGTGAATAAGAATCACAAACAACAGAACCAACTGAAATCCAAATCGAACAACGATACCGGCCGGGAAAATGAAGCCATGGATCCGACGACGAAGCTGTTGATTCGACAAGCAATTGTAAACGGCGGCGGCGGCGACGATGACAACGGCGGCAGAGCAGAAATTCGCGGCCCCTCGGAGGTTTTAGCCTTCACCAGATCAGTCAACAAAACTGACTCTTCTCTCGAATGA

Coding sequence (CDS)

ATGGATGTGAATAAGAATCACAAACAACAGAACCAACTGAAATCCAAATCGAACAACGATACCGGCCGGGAAAATGAAGCCATGGATCCGACGACGAAGCTGTTGATTCGACAAGCAATTGTAAACGGCGGCGGCGGCGACGATGACAACGGCGGCAGAGCAGAAATTCGCGGCCCCTCGGAGGTTTTAGCCTTCACCAGATCAGTCAACAAAACTGACTCTTCTCTCGAATGA
Homology
[Close]
BLAST of CSPI01G20650.1 vs. TrEMBL
Match: A0A0A0LWZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426950 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.1e-33
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 1  MDVNKNHKQQNQLKSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRGPS 60
          MDVNKNH+QQNQ KSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRGPS
Sbjct: 1  MDVNKNHQQQNQQKSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRGPS 60

Query: 61 EVLAFTRSVNKTDSSLE 78
          EVLAFTRSVNKTDSSLE
Sbjct: 61 EVLAFTRSVNKTDSSLE 77

[Close]
BLAST of CSPI01G20650.1 vs. TAIR10
Match: AT2G19320.1 (AT2G19320.1 unknown protein)

HSP 1 Score: 50.1 bits (118), Expect = 7.4e-07
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 1 

Query: 1  MDVNKNHKQQNQLKSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRG-- 60
          M+  K   +++Q K    N+ G+   A D T + +IR++IV   G +DD+G +    G  
Sbjct: 1  MEATKERMEKDQKKRVVTNEAGK---AEDNTIRTIIRESIVEDRGSNDDDGNKDNDHGAS 60

Query: 61 -PSEVLAFTRSVNKTDSSLE 78
           P ++LAF+R+V K DSSLE
Sbjct: 61 KPEDILAFSRTVRKIDSSLE 77

[Close]
BLAST of CSPI01G20650.1 vs. NCBI nr
Match: gi|700210398|gb|KGN65494.1| (hypothetical protein Csa_1G426950 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 7.4e-33
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 1  MDVNKNHKQQNQLKSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRGPS 60
          MDVNKNH+QQNQ KSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRGPS
Sbjct: 1  MDVNKNHQQQNQQKSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRGPS 60

Query: 61 EVLAFTRSVNKTDSSLE 78
          EVLAFTRSVNKTDSSLE
Sbjct: 61 EVLAFTRSVNKTDSSLE 77

The following BLAST results are available for this feature:
BLAST of CSPI01G20650.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G20650.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWZ4_CUCSA5.1e-3397.40Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426950 PE=4 SV=1[more]
BLAST of CSPI01G20650.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G19320.17.4e-0737.50 unknown protein[more]
BLAST of CSPI01G20650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210398|gb|KGN65494.1|7.4e-3397.40hypothetical protein Csa_1G426950 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G20650CSPI01G20650gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G20650.1CSPI01G20650.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G20650.1.utr3p1CSPI01G20650.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G20650.1.cds1CSPI01G20650.1.cds1CDS