CSPI01G20650 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G20650
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 16306003 .. 16306467 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTGAATAAGAATCACAAACAACAGAACCAACTGAAATCCAAATCGAACAACGATACCGGCCGGGAAAATGAAGCCATGGATCCGACGACGAAGCTGTTGATTCGACAAGCAATTGTAAACGGCGGCGGCGGCGACGATGACAACGGCGGCAGAGCAGAAATTCGCGGCCCCTCGGAGGTTTTAGCCTTCACCAGATCAGTCAACAAAACTGACTCTTCTCTCGAATGATGGTTTTGTGTTCTCTTTGTTTTGTTTTGATTTTTTAAATTTATGCTTAGAAACAAACACTAATTACCATAATGCTTAATATAATGTTTTAAAAAGAATAATAATAATAAAAGAAGACATATCACATATGAAGAAGAAAGAAAACATGGTTTAAATGTTTAGGTCCAAGTAAATGTTGATGTGCCCAAATCCTTTATCTTTTCATTTAAGTTTGACCAAAAACAAAAGTGG

mRNA sequence

ATGGATGTGAATAAGAATCACAAACAACAGAACCAACTGAAATCCAAATCGAACAACGATACCGGCCGGGAAAATGAAGCCATGGATCCGACGACGAAGCTGTTGATTCGACAAGCAATTGTAAACGGCGGCGGCGGCGACGATGACAACGGCGGCAGAGCAGAAATTCGCGGCCCCTCGGAGGTTTTAGCCTTCACCAGATCAGTCAACAAAACTGACTCTTCTCTCGAATGA

Coding sequence (CDS)

ATGGATGTGAATAAGAATCACAAACAACAGAACCAACTGAAATCCAAATCGAACAACGATACCGGCCGGGAAAATGAAGCCATGGATCCGACGACGAAGCTGTTGATTCGACAAGCAATTGTAAACGGCGGCGGCGGCGACGATGACAACGGCGGCAGAGCAGAAATTCGCGGCCCCTCGGAGGTTTTAGCCTTCACCAGATCAGTCAACAAAACTGACTCTTCTCTCGAATGA

Homology

[Close]

BLAST of CSPI01G20650 vs. TrEMBL
Match: A0A0A0LWZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426950 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.1e-33
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1


Query: 1  MDVNKNHKQQNQLKSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRGPS 60
          MDVNKNH+QQNQ KSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRGPS
Sbjct: 1  MDVNKNHQQQNQQKSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRGPS 60

Query: 61 EVLAFTRSVNKTDSSLE 78
          EVLAFTRSVNKTDSSLE
Sbjct: 61 EVLAFTRSVNKTDSSLE 77

[Close]

BLAST of CSPI01G20650 vs. TAIR10
Match: AT2G19320.1 (AT2G19320.1 unknown protein)

HSP 1 Score: 50.1 bits (118), Expect = 7.4e-07
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 1  MDVNKNHKQQNQLKSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRG-- 60
          M+  K   +++Q K    N+ G+   A D T + +IR++IV   G +DD+G +    G  
Sbjct: 1  MEATKERMEKDQKKRVVTNEAGK---AEDNTIRTIIRESIVEDRGSNDDDGNKDNDHGAS 60

Query: 61 -PSEVLAFTRSVNKTDSSLE 78
           P ++LAF+R+V K DSSLE
Sbjct: 61 KPEDILAFSRTVRKIDSSLE 77

[Close]

BLAST of CSPI01G20650 vs. NCBI nr
Match: gi|700210398|gb|KGN65494.1| (hypothetical protein Csa_1G426950 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 7.4e-33
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1


Query: 1  MDVNKNHKQQNQLKSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRGPS 60
          MDVNKNH+QQNQ KSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRGPS
Sbjct: 1  MDVNKNHQQQNQQKSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGRAEIRGPS 60

Query: 61 EVLAFTRSVNKTDSSLE 78
          EVLAFTRSVNKTDSSLE
Sbjct: 61 EVLAFTRSVNKTDSSLE 77

The following BLAST results are available for this feature:

BLAST of CSPI01G20650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G20650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWZ4_CUCSA	5.1e-33	97.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426950 PE=4 SV=1	[more]

BLAST of CSPI01G20650 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G19320.1	7.4e-07	37.50	unknown protein	[more]

BLAST of CSPI01G20650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210398\|gb\|KGN65494.1\|	7.4e-33	97.40	hypothetical protein Csa_1G426950 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G20650.1	CSPI01G20650.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G20650	Cla018864	Watermelon (97103) v1	cpiwmB087
CSPI01G20650	Csa1G426950	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G20650	MELO3C017418	Melon (DHL92) v3.5.1	cpimeB043
CSPI01G20650	ClCG06G013700	Watermelon (Charleston Gray)	cpiwcgB072
CSPI01G20650	MELO3C017418.2	Melon (DHL92) v3.6.1	cpimedB037
CSPI01G20650	CsaV3_1G031960	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G20650	Cla97C06G123160	Watermelon (97103) v2	cpiwmbB069
CSPI01G20650	Bhi02G000168	Wax gourd	cpiwgoB105
CSPI01G20650	Cucsa.282060	Cucumber (Gy14) v1	cgycpiB424

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G20650	Wild cucumber (PI 183967)	cpicpiB005
CSPI01G20650	Cucurbita maxima (Rimu)	cmacpiB060
CSPI01G20650	Cucurbita maxima (Rimu)	cmacpiB099
CSPI01G20650	Cucurbita maxima (Rimu)	cmacpiB159
CSPI01G20650	Cucurbita moschata (Rifu)	cmocpiB052
CSPI01G20650	Cucurbita moschata (Rifu)	cmocpiB091
CSPI01G20650	Cucurbita moschata (Rifu)	cmocpiB144
CSPI01G20650	Cucumber (Chinese Long) v2	cpicuB015
CSPI01G20650	Melon (DHL92) v3.5.1	cpimeB074
CSPI01G20650	Watermelon (Charleston Gray)	cpiwcgB010
CSPI01G20650	Watermelon (97103) v1	cpiwmB081
CSPI01G20650	Cucurbita pepo (Zucchini)	cpecpiB352
CSPI01G20650	Cucurbita pepo (Zucchini)	cpecpiB641
CSPI01G20650	Cucurbita pepo (Zucchini)	cpecpiB807
CSPI01G20650	Bottle gourd (USVL1VR-Ls)	cpilsiB008
CSPI01G20650	Bottle gourd (USVL1VR-Ls)	cpilsiB060
CSPI01G20650	Melon (DHL92) v3.6.1	cpimedB066
CSPI01G20650	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G20650	Cucumber (Gy14) v2	cgybcpiB049
CSPI01G20650	Silver-seed gourd	carcpiB0625
CSPI01G20650	Silver-seed gourd	carcpiB0822
CSPI01G20650	Cucumber (Chinese Long) v3	cpicucB019
CSPI01G20650	Watermelon (97103) v2	cpiwmbB022