CSPI01G18110.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G18110.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 13587258 .. 13587944 (-)
Sequence length	258

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCATTCTCTCTTAATTAAACATCTTTCTTTAATAATAATGGCTAGTTTGAAATCTGACGTTTACCCAAGTGGGGGCATTGGAGGTACAATTCGCGTTGGGCTTGGAGCTGGAGTAGGAGCCGGTGGAGCTGGAATTGGACACAATGGGAGTGGTGGGGGCATTGGAGGTACAATTCCGGTTGGGGTTGGAGCTGGAATAGGAGCTGGTGGACCTGGAATTGGACACAGTGGAAGTGGTGGTGAGGGGACTGGATCTGGCTCTAAATCTATCTATAATGATATTGATGAACTCTAAATCTAAAGCAGAGTCACAAATGGGTTCTAGGTCGGGTGGTTGTAGAGATGGACGTTCAAGTTATGGAGGAGATGATGAAAATGAGATCATATTATCTTCGATTAGCAGGTTGATTATTAATTAAAAATATATAATTAACAGTAATCATGAATAAGAACAACAATTAATCTTTTTTCGCGATTCTGAAGTTTTTTTTACGAACGTCGTAAAGAACATATAATCAAATTATAAATTATTGCGTTGCAAAATACAAAACATATAAGATTACTTAAAAAAAAAACCACACAAATAAGAAAAGAACATCAACAGGCCATCAAAACTTCCCACAACAATATGACTAAAGAAAAGTTTGAAACAATAAAAGTAGATTTTTTTAGTGCCAACAAAAAA

mRNA sequence

ATGGCTAGTTTGAAATCTGACGTTTACCCAAGTGGGGGCATTGGAGGTACAATTCGCGTTGGGCTTGGAGCTGGAGTAGGAGCCGGTGGAGCTGGAATTGGACACAATGGGAGTGGTGGGGGCATTGGAGGTACAATTCCGGTTGGGGTTGGAGCTGGAATAGGAGCTGGTGGACCTGGAATTGGACACAGTGGAAGTGGTGGTGAGGGGACTGGATCTGGCTCTAAATCTATCTATAATGATATTGATGAACTCTAA

Coding sequence (CDS)

ATGGCTAGTTTGAAATCTGACGTTTACCCAAGTGGGGGCATTGGAGGTACAATTCGCGTTGGGCTTGGAGCTGGAGTAGGAGCCGGTGGAGCTGGAATTGGACACAATGGGAGTGGTGGGGGCATTGGAGGTACAATTCCGGTTGGGGTTGGAGCTGGAATAGGAGCTGGTGGACCTGGAATTGGACACAGTGGAAGTGGTGGTGAGGGGACTGGATCTGGCTCTAAATCTATCTATAATGATATTGATGAACTCTAA

Homology

[Close]

BLAST of CSPI01G18110.1 vs. TrEMBL
Match: A0A0A0LTY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G277990 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-10
Identity = 48/78 (61.54%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 1  MASLKSDVYPSGGIGGTIRVGLGAGVGAGGAGIGHNGSGGGIGGTIPVGVGAGIGAGGPG 60
          MASLKSDVYPSGGIGGTI VG                            VGAG+GAGGPG
Sbjct: 1  MASLKSDVYPSGGIGGTILVG----------------------------VGAGVGAGGPG 50

Query: 61 IGHSGSGGEGTGSGSKSI 79
          IGHSGSGGEGTGSGSKSI
Sbjct: 61 IGHSGSGGEGTGSGSKSI 50

[Close]

BLAST of CSPI01G18110.1 vs. NCBI nr
Match: gi|700210167|gb|KGN65263.1| (hypothetical protein Csa_1G277990 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 4.3e-10
Identity = 48/78 (61.54%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 1  MASLKSDVYPSGGIGGTIRVGLGAGVGAGGAGIGHNGSGGGIGGTIPVGVGAGIGAGGPG 60
          MASLKSDVYPSGGIGGTI VG                            VGAG+GAGGPG
Sbjct: 1  MASLKSDVYPSGGIGGTILVG----------------------------VGAGVGAGGPG 50

Query: 61 IGHSGSGGEGTGSGSKSI 79
          IGHSGSGGEGTGSGSKSI
Sbjct: 61 IGHSGSGGEGTGSGSKSI 50

The following BLAST results are available for this feature:

BLAST of CSPI01G18110.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G18110.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTY9_CUCSA	3.0e-10	61.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G277990 PE=4 SV=1	[more]

BLAST of CSPI01G18110.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G18110.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210167\|gb\|KGN65263.1\|	4.3e-10	61.54	hypothetical protein Csa_1G277990 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G18110	CSPI01G18110	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G18110.1	CSPI01G18110.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G18110.1.utr3p1	CSPI01G18110.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G18110.1.cds1	CSPI01G18110.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G18110.1.utr5p1	CSPI01G18110.1.utr5p1	five_prime_UTR