CSPI01G18110 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G18110
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 13587258 .. 13587944 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCATTCTCTCTTAATTAAACATCTTTCTTTAATAATAATGGCTAGTTTGAAATCTGACGTTTACCCAAGTGGGGGCATTGGAGGTACAATTCGCGTTGGGCTTGGAGCTGGAGTAGGAGCCGGTGGAGCTGGAATTGGACACAATGGGAGTGGTGGGGGCATTGGAGGTACAATTCCGGTTGGGGTTGGAGCTGGAATAGGAGCTGGTGGACCTGGAATTGGACACAGTGGAAGTGGTGGTGAGGGGACTGGATCTGGCTCTAAATCTATCTATAATGATATTGATGAACTCTAAATCTAAAGCAGAGTCACAAATGGGTTCTAGGTCGGGTGGTTGTAGAGATGGACGTTCAAGTTATGGAGGAGATGATGAAAATGAGATCATATTATCTTCGATTAGCAGGTTGATTATTAATTAAAAATATATAATTAACAGTAATCATGAATAAGAACAACAATTAATCTTTTTTCGCGATTCTGAAGTTTTTTTTACGAACGTCGTAAAGAACATATAATCAAATTATAAATTATTGCGTTGCAAAATACAAAACATATAAGATTACTTAAAAAAAAAACCACACAAATAAGAAAAGAACATCAACAGGCCATCAAAACTTCCCACAACAATATGACTAAAGAAAAGTTTGAAACAATAAAAGTAGATTTTTTTAGTGCCAACAAAAAA

mRNA sequence

ATGGCTAGTTTGAAATCTGACGTTTACCCAAGTGGGGGCATTGGAGGTACAATTCGCGTTGGGCTTGGAGCTGGAGTAGGAGCCGGTGGAGCTGGAATTGGACACAATGGGAGTGGTGGGGGCATTGGAGGTACAATTCCGGTTGGGGTTGGAGCTGGAATAGGAGCTGGTGGACCTGGAATTGGACACAGTGGAAGTGGTGGTGAGGGGACTGGATCTGGCTCTAAATCTATCTATAATGATATTGATGAACTCTAA

Coding sequence (CDS)

ATGGCTAGTTTGAAATCTGACGTTTACCCAAGTGGGGGCATTGGAGGTACAATTCGCGTTGGGCTTGGAGCTGGAGTAGGAGCCGGTGGAGCTGGAATTGGACACAATGGGAGTGGTGGGGGCATTGGAGGTACAATTCCGGTTGGGGTTGGAGCTGGAATAGGAGCTGGTGGACCTGGAATTGGACACAGTGGAAGTGGTGGTGAGGGGACTGGATCTGGCTCTAAATCTATCTATAATGATATTGATGAACTCTAA
Homology
[Close]
BLAST of CSPI01G18110 vs. TrEMBL
Match: A0A0A0LTY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G277990 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-10
Identity = 48/78 (61.54%), Postives = 49/78 (62.82%), Query Frame = 1 

Query: 1  MASLKSDVYPSGGIGGTIRVGLGAGVGAGGAGIGHNGSGGGIGGTIPVGVGAGIGAGGPG 60
          MASLKSDVYPSGGIGGTI VG                            VGAG+GAGGPG
Sbjct: 1  MASLKSDVYPSGGIGGTILVG----------------------------VGAGVGAGGPG 50

Query: 61 IGHSGSGGEGTGSGSKSI 79
          IGHSGSGGEGTGSGSKSI
Sbjct: 61 IGHSGSGGEGTGSGSKSI 50

[Close]
BLAST of CSPI01G18110 vs. NCBI nr
Match: gi|700210167|gb|KGN65263.1| (hypothetical protein Csa_1G277990 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 4.3e-10
Identity = 48/78 (61.54%), Postives = 49/78 (62.82%), Query Frame = 1 

Query: 1  MASLKSDVYPSGGIGGTIRVGLGAGVGAGGAGIGHNGSGGGIGGTIPVGVGAGIGAGGPG 60
          MASLKSDVYPSGGIGGTI VG                            VGAG+GAGGPG
Sbjct: 1  MASLKSDVYPSGGIGGTILVG----------------------------VGAGVGAGGPG 50

Query: 61 IGHSGSGGEGTGSGSKSI 79
          IGHSGSGGEGTGSGSKSI
Sbjct: 61 IGHSGSGGEGTGSGSKSI 50

The following BLAST results are available for this feature:
BLAST of CSPI01G18110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G18110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTY9_CUCSA3.0e-1061.54Uncharacterized protein OS=Cucumis sativus GN=Csa_1G277990 PE=4 SV=1[more]
BLAST of CSPI01G18110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G18110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210167|gb|KGN65263.1|4.3e-1061.54hypothetical protein Csa_1G277990 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G18110.1CSPI01G18110.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G18110Watermelon (97103) v2cpiwmbB024
CSPI01G18110Watermelon (97103) v2cpiwmbB068
CSPI01G18110Wax gourdcpiwgoB006
CSPI01G18110Wax gourdcpiwgoB099
CSPI01G18110Wild cucumber (PI 183967)cpicpiB006
CSPI01G18110Cucumber (Gy14) v1cgycpiB096
CSPI01G18110Cucurbita maxima (Rimu)cmacpiB059
CSPI01G18110Cucurbita maxima (Rimu)cmacpiB097
CSPI01G18110Cucurbita maxima (Rimu)cmacpiB164
CSPI01G18110Cucurbita moschata (Rifu)cmocpiB051
CSPI01G18110Cucurbita moschata (Rifu)cmocpiB090
CSPI01G18110Cucurbita moschata (Rifu)cmocpiB149
CSPI01G18110Cucumber (Chinese Long) v2cpicuB001
CSPI01G18110Cucumber (Chinese Long) v2cpicuB014
CSPI01G18110Melon (DHL92) v3.5.1cpimeB057
CSPI01G18110Melon (DHL92) v3.5.1cpimeB075
CSPI01G18110Watermelon (Charleston Gray)cpiwcgB014
CSPI01G18110Watermelon (Charleston Gray)cpiwcgB071
CSPI01G18110Watermelon (97103) v1cpiwmB085
CSPI01G18110Watermelon (97103) v1cpiwmB086
CSPI01G18110Cucurbita pepo (Zucchini)cpecpiB351
CSPI01G18110Cucurbita pepo (Zucchini)cpecpiB640
CSPI01G18110Bottle gourd (USVL1VR-Ls)cpilsiB010
CSPI01G18110Bottle gourd (USVL1VR-Ls)cpilsiB064
CSPI01G18110Melon (DHL92) v3.6.1cpimedB051
CSPI01G18110Melon (DHL92) v3.6.1cpimedB067
CSPI01G18110Cucumber (Gy14) v2cgybcpiB002
CSPI01G18110Cucumber (Gy14) v2cgybcpiB050
CSPI01G18110Silver-seed gourdcarcpiB0138
CSPI01G18110Silver-seed gourdcarcpiB0539
CSPI01G18110Silver-seed gourdcarcpiB0951
CSPI01G18110Cucumber (Chinese Long) v3cpicucB000
CSPI01G18110Cucumber (Chinese Long) v3cpicucB020