CSPI01G15450.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G15450.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transposase related protein
Location	Chr1 : 10998164 .. 10998610 (+)
Sequence length	447

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTTTGACTCTAAGGAAAATCTTTTGTTGGCTCTTAAGAGGTATTGGGTGACACAACACTATGAAATTGTTGTAGTCGAATCAAACCAACATTTGTGGAATATTCGATGCAAACAGTGGAGTAATGGCTGCAACTGGAGGTTACGTGCTACGAAGCGTAAGAGCCACAAATTGTTTGAAATGACTAAGCTCCAAGGAGAGCACTCGTGTCTGTACTCAAATTTAACACAAGATCACTCACAGCTAGATTCAAATTTCATGAGTGTTCAAATTCAAAACATGGTGAAAGCTGATCCTATTATTATTGTGCCTATGCTTGTCGAAATCATAAGACAACAATACGGTTACCGTGTTAAGTATGGACGAGTTTGGCAAGGAAAGAAAAAAGCTTTGATAACCGTTTTTGGTGATTGGGAGAAATCATATAATGAGCTTCCATACTAG

mRNA sequence

ATGATCTTTGACTCTAAGGAAAATCTTTTGTTGGCTCTTAAGAGGTATTGGGTGACACAACACTATGAAATTGTTGTAGTCGAATCAAACCAACATTTGTGGAATATTCGATGCAAACAGTGGAGTAATGGCTGCAACTGGAGGTTACGTGCTACGAAGCGTAAGAGCCACAAATTGTTTGAAATGACTAAGCTCCAAGGAGAGCACTCGTGTCTGTACTCAAATTTAACACAAGATCACTCACAGCTAGATTCAAATTTCATGAGTGTTCAAATTCAAAACATGGTGAAAGCTGATCCTATTATTATTGTGCCTATGCTTGTCGAAATCATAAGACAACAATACGGTTACCGTGTTAAGTATGGACGAGTTTGGCAAGGAAAGAAAAAAGCTTTGATAACCGTTTTTGGTGATTGGGAGAAATCATATAATGAGCTTCCATACTAG

Coding sequence (CDS)

ATGATCTTTGACTCTAAGGAAAATCTTTTGTTGGCTCTTAAGAGGTATTGGGTGACACAACACTATGAAATTGTTGTAGTCGAATCAAACCAACATTTGTGGAATATTCGATGCAAACAGTGGAGTAATGGCTGCAACTGGAGGTTACGTGCTACGAAGCGTAAGAGCCACAAATTGTTTGAAATGACTAAGCTCCAAGGAGAGCACTCGTGTCTGTACTCAAATTTAACACAAGATCACTCACAGCTAGATTCAAATTTCATGAGTGTTCAAATTCAAAACATGGTGAAAGCTGATCCTATTATTATTGTGCCTATGCTTGTCGAAATCATAAGACAACAATACGGTTACCGTGTTAAGTATGGACGAGTTTGGCAAGGAAAGAAAAAAGCTTTGATAACCGTTTTTGGTGATTGGGAGAAATCATATAATGAGCTTCCATACTAG

Homology

[Close]

BLAST of CSPI01G15450.1 vs. TrEMBL
Match: A5BJW1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008825 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-39
Identity = 73/145 (50.34%), Postives = 106/145 (73.10%), Query Frame = 1


Query: 3   FDSKENLLLALKRYWVTQHYEIVVVESNQHLWNIRCKQWSNGCNWRLRATKRKSHKLFEM 62
           F+SKE+L  A+KRY + ++  +VV ES   LW +RCK+W  GCNWRLRA +RKSH +FE+
Sbjct: 106 FESKEDLQYAVKRYAICRNQHLVVCESEPQLWAVRCKKWQEGCNWRLRACRRKSHGMFEI 165

Query: 63  TKLQGEHSCLYSNLTQDHSQLDSNFMSVQIQNMVKADPIIIVPMLVEIIRQQYGYRVKYG 122
           TK  G H+C+Y  L+QDHSQLDS  ++ +IQN+V+ D    +  L +I++ ++GY V Y 
Sbjct: 166 TKYAGPHTCVYPKLSQDHSQLDSTLIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYR 225

Query: 123 RVWQGKKKALITVFGDWEKSYNELP 148
           R+W+ K+KA++ VFGDW++SY  LP
Sbjct: 226 RIWEAKRKAMLRVFGDWDESYQALP 250

[Close]

BLAST of CSPI01G15450.1 vs. TrEMBL
Match: A5B5G3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019818 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-39
Identity = 73/145 (50.34%), Postives = 106/145 (73.10%), Query Frame = 1


Query: 3   FDSKENLLLALKRYWVTQHYEIVVVESNQHLWNIRCKQWSNGCNWRLRATKRKSHKLFEM 62
           F+SKE+L  A+KRY + ++  +VV ES   LW +RCK+W  GCNWRLRA +RKSH +FE+
Sbjct: 236 FESKEDLQYAVKRYAICRNQHLVVCESEPQLWAVRCKKWQEGCNWRLRACRRKSHGMFEI 295

Query: 63  TKLQGEHSCLYSNLTQDHSQLDSNFMSVQIQNMVKADPIIIVPMLVEIIRQQYGYRVKYG 122
           TK  G H+C+Y  L+QDHSQLDS  ++ +IQN+V+ D    +  L +I++ ++GY V Y 
Sbjct: 296 TKYAGPHTCVYPKLSQDHSQLDSTLIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYR 355

Query: 123 RVWQGKKKALITVFGDWEKSYNELP 148
           R+W+ K+KA++ VFGDW++SY  LP
Sbjct: 356 RIWEAKRKAMLRVFGDWDESYQALP 380

[Close]

BLAST of CSPI01G15450.1 vs. TrEMBL
Match: A5BXK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022914 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.1e-39
Identity = 72/145 (49.66%), Postives = 105/145 (72.41%), Query Frame = 1


Query: 3   FDSKENLLLALKRYWVTQHYEIVVVESNQHLWNIRCKQWSNGCNWRLRATKRKSHKLFEM 62
           F+SKE+L  A+KRY + ++  +VV ES   LW +RCK+W  GCNWRLRA +RKSH +FE+
Sbjct: 112 FESKEDLQYAVKRYAICRNQHLVVCESEPQLWAVRCKKWQEGCNWRLRACRRKSHGMFEI 171

Query: 63  TKLQGEHSCLYSNLTQDHSQLDSNFMSVQIQNMVKADPIIIVPMLVEIIRQQYGYRVKYG 122
           TK  G H+C+Y  L+QDHSQLDS  ++ +IQN+V+ D    +  L +I++ ++GY V Y 
Sbjct: 172 TKYAGPHTCVYPKLSQDHSQLDSTLIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYR 231

Query: 123 RVWQGKKKALITVFGDWEKSYNELP 148
           R+W+ K+KA++ VFGDW++SY   P
Sbjct: 232 RIWEAKRKAMLRVFGDWDESYQAXP 256

[Close]

BLAST of CSPI01G15450.1 vs. TrEMBL
Match: A5BD12_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040275 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.3e-36
Identity = 66/145 (45.52%), Postives = 106/145 (73.10%), Query Frame = 1


Query: 3   FDSKENLLLALKRYWVTQHYEIVVVESNQHLWNIRCKQWSNGCNWRLRATKRKSHKLFEM 62
           F SK +L  A+KRY + ++ +++V ES  +LW ++C++W+ GC WRLRA + K+H +FE+
Sbjct: 271 FKSKADLQYAVKRYLIHKNQQMIVTESEPNLWAVKCRKWNEGCKWRLRACRLKTHDMFEI 330

Query: 63  TKLQGEHSCLYSNLTQDHSQLDSNFMSVQIQNMVKADPIIIVPMLVEIIRQQYGYRVKYG 122
           TK    H+C+Y  L++DHSQLDS  ++ +IQN+V+ DP I +  L +I++ ++GY V Y 
Sbjct: 331 TKYTNSHTCVYPKLSEDHSQLDSTLIAREIQNVVQRDPNISIAALHQIVKGKFGYDVHYR 390

Query: 123 RVWQGKKKALITVFGDWEKSYNELP 148
           +VW+ +KKA+  VFGDW++SY+ LP
Sbjct: 391 KVWEARKKAIERVFGDWDESYHLLP 415

[Close]

BLAST of CSPI01G15450.1 vs. TrEMBL
Match: A5BUS6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042537 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35
Identity = 70/145 (48.28%), Postives = 99/145 (68.28%), Query Frame = 1


Query: 3   FDSKENLLLALKRYWVTQHYEIVVVESNQHLWNIRCKQWSNGCNWRLRATKRKSHKLFEM 62
           F+S+E+L  A+KRY + ++  +VV ES   LW +RCK+W  GCNWRLRA +RKSH +FE+
Sbjct: 636 FESEEDLQYAIKRYAICRNQHLVVCESEPQLWAVRCKKWQEGCNWRLRACRRKSHGMFEI 695

Query: 63  TKLQGEHSCLYSNLTQDHSQLDSNFMSVQIQNMVKADPIIIVPMLVEIIRQQYGYRVKYG 122
           TK  G H+C+Y  L+QDHSQLDS  ++ +IQN+VK                ++GY V Y 
Sbjct: 696 TKYAGPHTCVYPKLSQDHSQLDSTLIAREIQNIVK---------------DKFGYDVHYR 755

Query: 123 RVWQGKKKALITVFGDWEKSYNELP 148
           R+W+ K+KA++ VFGDW++SY  LP
Sbjct: 756 RIWEAKRKAMLRVFGDWDESYQALP 765

[Close]

BLAST of CSPI01G15450.1 vs. TAIR10
Match: AT1G64255.1 (AT1G64255.1 MuDR family transposase)

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-10
Identity = 37/123 (30.08%), Postives = 64/123 (52.03%), Query Frame = 1


Query: 25  VVVESNQHLWNIRCKQWSNGCNWRLRATKRKSHKLFEMTKLQGEHSCLYSNLTQDHSQLD 84
           VV E+ +  +   C +W   C W L A + K H L E+ K  G H+C +  + +D     
Sbjct: 220 VVRETAKDEYIFECIRWK--CKWSLGAARMKKHGLVEIIKYTGPHTC-HPIVPEDFK--- 279

Query: 85  SNFMSVQIQNMVKADPIIIVPMLVEIIRQQYGYRVKYGRVWQGKKKALITVFGDWEKSYN 144
           S F + +I+  V+  P   +  L +  +++ GY ++   V   K+KA+  VFGDW++S+ 
Sbjct: 280 SEFETDEIERAVRYMPTQTISELKKWWKKKIGYELETSDVRLAKEKAIKRVFGDWDQSFE 336

Query: 145 ELP 148
           + P
Sbjct: 340 DFP 336

[Close]

BLAST of CSPI01G15450.1 vs. NCBI nr
Match: gi|659101520|ref|XP_008451648.1| (PREDICTED: uncharacterized protein LOC103492881 [Cucumis melo])

HSP 1 Score: 246.5 bits (628), Expect = 2.9e-62
Identity = 108/148 (72.97%), Postives = 135/148 (91.22%), Query Frame = 1


Query: 1   MIFDSKENLLLALKRYWVTQHYEIVVVESNQHLWNIRCKQWSNGCNWRLRATKRKSHKLF 60
           M+FD KE+L LA+K+Y VTQHYEIVVVESNQ++W++RCKQWSN CNWRLR ++RKSH LF
Sbjct: 46  MLFDCKEDLQLAVKKYCVTQHYEIVVVESNQNIWSVRCKQWSNSCNWRLRGSRRKSHGLF 105

Query: 61  EMTKLQGEHSCLYSNLTQDHSQLDSNFMSVQIQNMVKADPIIIVPMLVEIIRQQYGYRVK 120
           E+++L+GEHSCLYSNLTQDHSQLDSNFMS++IQN+V+ADP + V +L+E+I+QQYGY VK
Sbjct: 106 EISRLEGEHSCLYSNLTQDHSQLDSNFMSIEIQNIVRADPSVTVSVLMEMIKQQYGYMVK 165

Query: 121 YGRVWQGKKKALITVFGDWEKSYNELPY 149
           Y RVWQ K+KAL+ VFGDW+KSYN+LPY
Sbjct: 166 YRRVWQAKRKALVVVFGDWDKSYNKLPY 193

[Close]

BLAST of CSPI01G15450.1 vs. NCBI nr
Match: gi|731440008|ref|XP_010647557.1| (PREDICTED: uncharacterized protein LOC104878656, partial [Vitis vinifera])

HSP 1 Score: 172.6 bits (436), Expect = 5.3e-40
Identity = 71/145 (48.97%), Postives = 109/145 (75.17%), Query Frame = 1


Query: 3   FDSKENLLLALKRYWVTQHYEIVVVESNQHLWNIRCKQWSNGCNWRLRATKRKSHKLFEM 62
           F+SK +L  A+KRY + ++  ++V+ES   +W ++CK+WS GCNWRLRA +RK H LFE+
Sbjct: 205 FESKVDLQYAVKRYSICRNQHLIVIESEPDIWAVKCKKWSEGCNWRLRACRRKCHGLFEI 264

Query: 63  TKLQGEHSCLYSNLTQDHSQLDSNFMSVQIQNMVKADPIIIVPMLVEIIRQQYGYRVKYG 122
           TK  G H+C+Y  L+QDHSQLDS F++ ++QN+V++D  I +  L +I++ ++GY V Y 
Sbjct: 265 TKYIGPHTCVYPKLSQDHSQLDSTFIAREVQNVVQSDHTISIAALHQIVKDKFGYNVHYK 324

Query: 123 RVWQGKKKALITVFGDWEKSYNELP 148
           R+W+ K+KA+I +FGDW++SY  LP
Sbjct: 325 RIWEAKRKAMIRIFGDWDESYQTLP 349

[Close]

BLAST of CSPI01G15450.1 vs. NCBI nr
Match: gi|147780218|emb|CAN72427.1| (hypothetical protein VITISV_008825 [Vitis vinifera])

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-39
Identity = 73/145 (50.34%), Postives = 106/145 (73.10%), Query Frame = 1


Query: 3   FDSKENLLLALKRYWVTQHYEIVVVESNQHLWNIRCKQWSNGCNWRLRATKRKSHKLFEM 62
           F+SKE+L  A+KRY + ++  +VV ES   LW +RCK+W  GCNWRLRA +RKSH +FE+
Sbjct: 106 FESKEDLQYAVKRYAICRNQHLVVCESEPQLWAVRCKKWQEGCNWRLRACRRKSHGMFEI 165

Query: 63  TKLQGEHSCLYSNLTQDHSQLDSNFMSVQIQNMVKADPIIIVPMLVEIIRQQYGYRVKYG 122
           TK  G H+C+Y  L+QDHSQLDS  ++ +IQN+V+ D    +  L +I++ ++GY V Y 
Sbjct: 166 TKYAGPHTCVYPKLSQDHSQLDSTLIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYR 225

Query: 123 RVWQGKKKALITVFGDWEKSYNELP 148
           R+W+ K+KA++ VFGDW++SY  LP
Sbjct: 226 RIWEAKRKAMLRVFGDWDESYQALP 250

[Close]

BLAST of CSPI01G15450.1 vs. NCBI nr
Match: gi|731396581|ref|XP_010652563.1| (PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera])

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-39
Identity = 73/145 (50.34%), Postives = 106/145 (73.10%), Query Frame = 1


Query: 3   FDSKENLLLALKRYWVTQHYEIVVVESNQHLWNIRCKQWSNGCNWRLRATKRKSHKLFEM 62
           F+SKE+L  A+KRY + ++  +VV ES   LW +RCK+W  GCNWRLRA +RKSH +FE+
Sbjct: 260 FESKEDLQYAVKRYAICRNQHLVVCESEPQLWAVRCKKWQEGCNWRLRACRRKSHGMFEI 319

Query: 63  TKLQGEHSCLYSNLTQDHSQLDSNFMSVQIQNMVKADPIIIVPMLVEIIRQQYGYRVKYG 122
           TK  G H+C+Y  L+QDHSQLDS  ++ +IQN+V+ D    +  L +I++ ++GY V Y 
Sbjct: 320 TKYAGPHTCVYPKLSQDHSQLDSTLIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYR 379

Query: 123 RVWQGKKKALITVFGDWEKSYNELP 148
           R+W+ K+KA++ VFGDW++SY  LP
Sbjct: 380 RIWEAKRKAMLRVFGDWDESYQALP 404

[Close]

BLAST of CSPI01G15450.1 vs. NCBI nr
Match: gi|147857559|emb|CAN78664.1| (hypothetical protein VITISV_019818 [Vitis vinifera])

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-39
Identity = 73/145 (50.34%), Postives = 106/145 (73.10%), Query Frame = 1


Query: 3   FDSKENLLLALKRYWVTQHYEIVVVESNQHLWNIRCKQWSNGCNWRLRATKRKSHKLFEM 62
           F+SKE+L  A+KRY + ++  +VV ES   LW +RCK+W  GCNWRLRA +RKSH +FE+
Sbjct: 236 FESKEDLQYAVKRYAICRNQHLVVCESEPQLWAVRCKKWQEGCNWRLRACRRKSHGMFEI 295

Query: 63  TKLQGEHSCLYSNLTQDHSQLDSNFMSVQIQNMVKADPIIIVPMLVEIIRQQYGYRVKYG 122
           TK  G H+C+Y  L+QDHSQLDS  ++ +IQN+V+ D    +  L +I++ ++GY V Y 
Sbjct: 296 TKYAGPHTCVYPKLSQDHSQLDSTLIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYR 355

Query: 123 RVWQGKKKALITVFGDWEKSYNELP 148
           R+W+ K+KA++ VFGDW++SY  LP
Sbjct: 356 RIWEAKRKAMLRVFGDWDESYQALP 380

The following BLAST results are available for this feature:

BLAST of CSPI01G15450.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G15450.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BJW1_VITVI	1.1e-39	50.34	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008825 PE=4 SV=1	[more]
A5B5G3_VITVI	1.1e-39	50.34	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019818 PE=4 SV=1	[more]
A5BXK2_VITVI	4.1e-39	49.66	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022914 PE=4 SV=1	[more]
A5BD12_VITVI	7.3e-36	45.52	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040275 PE=4 SV=1	[more]
A5BUS6_VITVI	1.2e-35	48.28	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042537 PE=4 SV=1	[more]

BLAST of CSPI01G15450.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64255.1	3.6e-10	30.08	MuDR family transposase	[more]

BLAST of CSPI01G15450.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101520\|ref\|XP_008451648.1\|	2.9e-62	72.97	PREDICTED: uncharacterized protein LOC103492881 [Cucumis melo]	[more]
gi\|731440008\|ref\|XP_010647557.1\|	5.3e-40	48.97	PREDICTED: uncharacterized protein LOC104878656, partial [Vitis vinifera]	[more]
gi\|147780218\|emb\|CAN72427.1\|	1.6e-39	50.34	hypothetical protein VITISV_008825 [Vitis vinifera]	[more]
gi\|731396581\|ref\|XP_010652563.1\|	1.6e-39	50.34	PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]	[more]
gi\|147857559\|emb\|CAN78664.1\|	1.6e-39	50.34	hypothetical protein VITISV_019818 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004332	Transposase_MuDR

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G15450	CSPI01G15450	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G15450.1	CSPI01G15450.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G15450.1.cds1	CSPI01G15450.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004332	Transposase, MuDR, plant	PFAM	PF03108	DBD_Tnp_Mut	coord: 1..61 score: 4.6
None	No IPR available	PANTHER	PTHR31973	FAMILY NOT NAMED	coord: 1..147 score: 5.7
None	No IPR available	PANTHER	PTHR31973:SF4	MUDR FAMILY TRANSPOSASE	coord: 1..147 score: 5.7