CSPI01G15010.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G15010.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 10645002 .. 10645310 (+)
Sequence length	309

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCTTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGA

mRNA sequence

ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCTTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGA

Coding sequence (CDS)

ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCTTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGA

Homology

[Close]

BLAST of CSPI01G15010.1 vs. TrEMBL
Match: A0A0A0LSS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168860 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-50
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 1


Query: 1   MGMTNKVRFKTEEEGVLFKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60
           MGMTNKVRFKTEEEGVL KQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV
Sbjct: 1   MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60

Query: 61  QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR 103
           QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR
Sbjct: 61  QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR 102

[Close]

BLAST of CSPI01G15010.1 vs. NCBI nr
Match: gi|700209864|gb|KGN64960.1| (hypothetical protein Csa_1G168860 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 3.0e-50
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 1


Query: 1   MGMTNKVRFKTEEEGVLFKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60
           MGMTNKVRFKTEEEGVL KQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV
Sbjct: 1   MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60

Query: 61  QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR 103
           QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR
Sbjct: 61  QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR 102

The following BLAST results are available for this feature:

BLAST of CSPI01G15010.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G15010.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSS3_CUCSA	2.1e-50	99.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168860 PE=4 SV=1	[more]

BLAST of CSPI01G15010.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G15010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209864\|gb\|KGN64960.1\|	3.0e-50	99.02	hypothetical protein Csa_1G168860 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G15010	CSPI01G15010	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G15010.1	CSPI01G15010.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G15010.1.cds1	CSPI01G15010.1.cds1	CDS