CSPI01G14880.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G14880.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Envelope-like protein
Location	Chr1 : 10537388 .. 10537720 (+)
Sequence length	333

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTACAATATGGTCTATCAATGGAATTTTGGCTGCATCCTTGAGTTTAAAGTATGTCATTTTACACGAAATTGGAATTGCCAACTGGTTCCCCTCATCCCATGCATCAAGTGTCTCTAATGCTCTTGCTACGTTTTTATATCGAATTAGTACTGAATTGACTTTGGATGCTAGGCTGTTTATTTACTTGCAGTTGTTAAGGCATATTGGTACGTTTGGGGTAAAAATTCCACTCGCTCTTCCTCGGTTCTTCTTCAGTTTCTTGCTTCACTTACAACCTGATATTTTAACTAATCTTGATGCTCCGAGCCCAATCCATGCACCTTATTAT

mRNA sequence

ATGCTTACAATATGGTCTATCAATGGAATTTTGGCTGCATCCTTGAGTTTAAAGTATGTCATTTTACACGAAATTGGAATTGCCAACTGGTTCCCCTCATCCCATGCATCAAGTGTCTCTAATGCTCTTGCTACGTTTTTATATCGAATTAGTACTGAATTGACTTTGGATGCTAGGCTGTTTATTTACTTGCAGTTGTTAAGGCATATTGGTACGTTTGGGGTAAAAATTCCACTCGCTCTTCCTCGGTTCTTCTTCAGTTTCTTGCTTCACTTACAACCTGATATTTTAACTAATCTTGATGCTCCGAGCCCAATCCATGCACCTTATTAT

Coding sequence (CDS)

ATGCTTACAATATGGTCTATCAATGGAATTTTGGCTGCATCCTTGAGTTTAAAGTATGTCATTTTACACGAAATTGGAATTGCCAACTGGTTCCCCTCATCCCATGCATCAAGTGTCTCTAATGCTCTTGCTACGTTTTTATATCGAATTAGTACTGAATTGACTTTGGATGCTAGGCTGTTTATTTACTTGCAGTTGTTAAGGCATATTGGTACGTTTGGGGTAAAAATTCCACTCGCTCTTCCTCGGTTCTTCTTCAGTTTCTTGCTTCACTTACAACCTGATATTTTAACTAATCTTGATGCTCCGAGCCCAATCCATGCACCTTATTAT

Homology

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BLAST of CSPI01G14880.1 vs. TrEMBL
Match: E5GCP1_CUCME (Envelope-like protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-27
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 1


Query: 2   LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLF 61
           L++W +NGI A + S+KYVILH+IGIANWFPSSHASSVS AL TFLYR+  +  +D   F
Sbjct: 203 LSLWPVNGIHAVAFSVKYVILHKIGIANWFPSSHASSVSAALGTFLYRVCNDNKVDTCAF 262

Query: 62  IYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNL-DAPSPIH 108
           IY QLL+H+G+FGVKIP+ALPRFF S LLHL   + +++ D    +H
Sbjct: 263 IYNQLLKHVGSFGVKIPIALPRFFSSLLLHLNATVGSHMPDMDHDVH 309

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BLAST of CSPI01G14880.1 vs. TrEMBL
Match: O64406_SOYBN (Envelope-like (Fragment) OS=Glycine max PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 1


Query: 5   WSINGILAAS-LSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIY 64
           W   G L+A  LS+KY ILH IG ANW P++H S+V+  L  FLY + T+   +   +I+
Sbjct: 438 WPKKGKLSAGKLSVKYAILHRIGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGKYIF 497

Query: 65  LQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDA 103
            Q ++H  +F VK+P+A P      +L   P+IL N+D+
Sbjct: 498 DQTVKHSESFAVKLPIAFPTVLCGIMLSQHPNILNNIDS 536

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BLAST of CSPI01G14880.1 vs. TrEMBL
Match: Q84VH9_SOYBN (Envelope-like protein (Fragment) OS=Glycine max PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 1


Query: 5   WSINGILAAS-LSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIY 64
           W   G L+A  LS+KY ILH IG ANW P++H S+V+  L  FLY + T+   +   +I+
Sbjct: 446 WPKKGKLSAGKLSVKYAILHRIGTANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIF 505

Query: 65  LQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDA 103
            Q ++H  +F VK+P+A P      +L   P+IL N+D+
Sbjct: 506 DQTVKHSESFAVKLPIAFPTVLCGIMLSQHPNILNNIDS 544

[Close]

BLAST of CSPI01G14880.1 vs. TrEMBL
Match: Q84VH5_SOYBN (Envelope-like protein (Fragment) OS=Glycine max PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 1


Query: 5   WSINGILAAS-LSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIY 64
           W   G L+A  LS+KY ILH IG ANW P++H S+V+  L  FLY + T+   +   +I+
Sbjct: 468 WPKKGKLSAGKLSVKYAILHRIGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIF 527

Query: 65  LQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSPIHAP 110
            Q ++H  +F VK+P+A P      +L   P+IL   D+     +P
Sbjct: 528 DQTVKHSESFAVKLPIAFPTVLCGIMLSQHPNILNYTDSVMKRESP 573

[Close]

BLAST of CSPI01G14880.1 vs. TrEMBL
Match: Q84VI1_SOYBN (Envelope-like protein (Fragment) OS=Glycine max PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.0e-11
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 1


Query: 5   WSINGILAAS-LSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIY 64
           W   G L+A  LS+KY ILH IG ANW P++H S+V+  L  FLY + T+   +   +I+
Sbjct: 462 WPKKGKLSAGKLSVKYAILHRIGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIF 521

Query: 65  LQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSPIHAP 110
            Q ++H  +F +K+P+A P      +L   P++L   D+     +P
Sbjct: 522 DQTVKHSESFAIKLPIAFPTVLCGIMLSQHPNMLNYTDSVMKRESP 567

[Close]

BLAST of CSPI01G14880.1 vs. NCBI nr
Match: gi|659133526|ref|XP_008466770.1| (PREDICTED: uncharacterized protein LOC103504101 [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 2.0e-31
Identity = 72/105 (68.57%), Postives = 85/105 (80.95%), Query Frame = 1


Query: 1   MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARL 60
           +L+ WS+NGI AA+LS+KY ILH+IGIANWFPSSHASSVS AL TFLYRI  +  +DA  
Sbjct: 90  ILSSWSVNGIPAAALSVKYAILHKIGIANWFPSSHASSVSAALGTFLYRICNDDKVDAGA 149

Query: 61  FIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           FIY QLLRH+G+FGVK+P+ALPRFF   LLHL   ILT+ DAP P
Sbjct: 150 FIYNQLLRHVGSFGVKLPIALPRFFSGLLLHLNVAILTSSDAPDP 194

[Close]

BLAST of CSPI01G14880.1 vs. NCBI nr
Match: gi|659124381|ref|XP_008462131.1| (PREDICTED: uncharacterized protein LOC103500560 [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 3.2e-29
Identity = 68/104 (65.38%), Postives = 80/104 (76.92%), Query Frame = 1


Query: 2   LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLF 61
           L+ W +NGI   +LS+KYVILH+IGIANWFPSSHASSVS AL TFLYRI  +  +DA  F
Sbjct: 303 LSSWPVNGIPVVALSVKYVILHKIGIANWFPSSHASSVSAALDTFLYRICNDDKVDASAF 362

Query: 62  IYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           IY QLLRH+ +FGVK+P+ALPRFF   LLHL   +LT  DAP P
Sbjct: 363 IYNQLLRHVRSFGVKLPIALPRFFSGLLLHLNAAVLTTSDAPGP 406

[Close]

BLAST of CSPI01G14880.1 vs. NCBI nr
Match: gi|659082086|ref|XP_008441663.1| (PREDICTED: uncharacterized protein LOC103485747 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 3.5e-28
Identity = 65/104 (62.50%), Postives = 80/104 (76.92%), Query Frame = 1


Query: 2   LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLF 61
           L+ W +NGI A +LS+KY ILH+IGIANWFPSSHA SV  AL TFLYRI  +  +DA  F
Sbjct: 90  LSSWPVNGIPAVALSVKYAILHKIGIANWFPSSHAYSVFAALDTFLYRICNDDRVDAGAF 149

Query: 62  IYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           IY QLLRH+G+FGVK+P+ALP+FF+  LLHL   +LT  +AP P
Sbjct: 150 IYNQLLRHVGSFGVKLPIALPKFFYGLLLHLNVAVLTTSNAPGP 193

[Close]

BLAST of CSPI01G14880.1 vs. NCBI nr
Match: gi|659133333|ref|XP_008466681.1| (PREDICTED: uncharacterized protein LOC103504033 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 4.6e-28
Identity = 66/104 (63.46%), Postives = 80/104 (76.92%), Query Frame = 1


Query: 2   LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLF 61
           L+ W +NGI AA+LS+KYVILH+IGIANWFPSSHASS+S AL  FLY+I  +  +D   F
Sbjct: 91  LSTWPMNGIPAAALSVKYVILHKIGIANWFPSSHASSISVALGAFLYQICNDDKVDTGAF 150

Query: 62  IYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           IY QLLRH+G+FGVK+P+AL R FFS LLHL   +LT  D P P
Sbjct: 151 IYNQLLRHVGSFGVKVPIALLRLFFSLLLHLNGAVLTASDTPRP 194

[Close]

BLAST of CSPI01G14880.1 vs. NCBI nr
Match: gi|659129246|ref|XP_008464590.1| (PREDICTED: uncharacterized protein LOC103502436 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 4.6e-28
Identity = 66/104 (63.46%), Postives = 80/104 (76.92%), Query Frame = 1


Query: 2   LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLF 61
           L++W ++GI A +LS+ Y ILH+IGIANWFPSSHASSVS AL TFLY I  +  +DA  F
Sbjct: 259 LSLWLVDGIPAIALSVNYAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAF 318

Query: 62  IYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           IY QLLRH+G+FGVK+ +ALPRFF   LLHL   +LT  DAPSP
Sbjct: 319 IYNQLLRHVGSFGVKLSIALPRFFSDLLLHLYAAVLTTSDAPSP 362

The following BLAST results are available for this feature:

BLAST of CSPI01G14880.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G14880.1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCP1_CUCME	2.7e-27	59.81	Envelope-like protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
O64406_SOYBN	1.1e-12	40.40	Envelope-like (Fragment) OS=Glycine max PE=4 SV=1	[more]
Q84VH9_SOYBN	1.4e-12	40.40	Envelope-like protein (Fragment) OS=Glycine max PE=4 SV=1	[more]
Q84VH5_SOYBN	2.1e-11	37.74	Envelope-like protein (Fragment) OS=Glycine max PE=4 SV=1	[more]
Q84VI1_SOYBN	6.0e-11	35.85	Envelope-like protein (Fragment) OS=Glycine max PE=4 SV=1	[more]

BLAST of CSPI01G14880.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G14880.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133526\|ref\|XP_008466770.1\|	2.0e-31	68.57	PREDICTED: uncharacterized protein LOC103504101 [Cucumis melo]	[more]
gi\|659124381\|ref\|XP_008462131.1\|	3.2e-29	65.38	PREDICTED: uncharacterized protein LOC103500560 [Cucumis melo]	[more]
gi\|659082086\|ref\|XP_008441663.1\|	3.5e-28	62.50	PREDICTED: uncharacterized protein LOC103485747 [Cucumis melo]	[more]
gi\|659133333\|ref\|XP_008466681.1\|	4.6e-28	63.46	PREDICTED: uncharacterized protein LOC103504033 [Cucumis melo]	[more]
gi\|659129246\|ref\|XP_008464590.1\|	4.6e-28	63.46	PREDICTED: uncharacterized protein LOC103502436 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G14880	CSPI01G14880	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G14880.1	CSPI01G14880.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G14880.mrna.cds.1	CSPI01G14880.mrna.cds.1	CDS