CSPI01G05380.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAAGAAGAGGAAGCATAGTGAGTCTTTGCCGACGGTATCAGTTAAGAAGGACGATGATGCTCCGGAGAGACCTAAGCGGACACTCATGGGCTGGAAAGACAAAAAAGTGACAAAAGAGAGTGAAGTTGGTTCTGATCATGCTGTTTTTCGAAATAAAGAAAAGGTTCTCATCACGTGTTCCCGTCGAATCAATTTTAGGTATGTAATATAGTTGAAACAAGTTGTTGTAGCTTTTTGTAAAATATATTGTTATGTCTATACATGGTTAGGTAGTTTGCAGTATAACTTATCACCCAGTGACCAAATGTTTTTTGTTTTTATTTATTTAGTTTTTCTTCCCTTTAGAATTTTTGGCAATTTAACTTGTGATTGATTAGGTATTGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTTGAGGTCCAGCAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAAGGTTGTTCTTCCAGCCTATTTTTCGAGGTTAGAACCTTTTCATTGCACTGTCGTAATCTGGAATTTTTAAGGTACAATGTTTTCTAATTTTTATTTTTAATTAGATATAGGATGATAACATTTTGGTTTTATTCTTGTGGTGTATAACTTATAAGGATGTTTTAACTATCCTTTTGCTTTTCATTATATTACTTTCCTATATGGCCTTCTCATCATGTTTGTACATTGCGATCATATTTTTCCACTCATTGATATTTTTTTCTCTAATTCCAGTGCAGAAAACATAAAGATCTTTATCTATGTATGGCAAAGTGCCCTAGTGGGCCATCTGTGAAGTTTTTAGTTAATGCCATTTGTTTTCTCTATTGTTGATGACCATATCTGGTTCCGGAATTA ATGGCAAAGAAGAGGAAGCATAGTGAGTCTTTGCCGACGGTATCAGTTAAGAAGGACGATGATGCTCCGGAGAGACCTAAGCGGACACTCATGGGCTGGAAAGACAAAAAAGTGACAAAAGAGAGTGAAGTTGGTTCTGATCATGCTGTTTTTCGAAATAAAGAAAAGGTTCTCATCACGTGTTCCCGTCGAATCAATTTTAGGTATTGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTTGAGGTCCAGCAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAAGGTTGTTCTTCCAGCCTATTTTTCGAGTGCAGAAAACATAAAGATCTTTATCTATGTATGGCAAAGTGCCCTAGTGGGCCATCTGTGAAGTTTTTAGTTAATGCCATTTGTTTTCTCTATTGTTGA ATGGCAAAGAAGAGGAAGCATAGTGAGTCTTTGCCGACGGTATCAGTTAAGAAGGACGATGATGCTCCGGAGAGACCTAAGCGGACACTCATGGGCTGGAAAGACAAAAAAGTGACAAAAGAGAGTGAAGTTGGTTCTGATCATGCTGTTTTTCGAAATAAAGAAAAGGTTCTCATCACGTGTTCCCGTCGAATCAATTTTAGGTATTGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTTGAGGTCCAGCAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAAGGTTGTTCTTCCAGCCTATTTTTCGAGTGCAGAAAACATAAAGATCTTTATCTATGTATGGCAAAGTGCCCTAGTGGGCCATCTGTGAAGTTTTTAGTTAATGCCATTTGTTTTCTCTATTGTTGA
BLAST of CSPI01G05380.1 vs. Swiss-Prot
Match: BRX1_RAT (Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 2.8e-17 Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. Swiss-Prot
Match: BRX1_BOVIN (Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 4.8e-17 Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. Swiss-Prot
Match: BRX1_HUMAN (Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2) HSP 1 Score: 89.0 bits (219), Expect = 4.8e-17 Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. Swiss-Prot
Match: BRX1_MOUSE (Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1 PE=1 SV=3) HSP 1 Score: 89.0 bits (219), Expect = 4.8e-17 Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. Swiss-Prot
Match: BRX1_PONAB (Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 4.8e-17 Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. TrEMBL
Match: A0A0A0M1K6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G570210 PE=4 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 1.1e-57 Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. TrEMBL
Match: A0A0D2SNA9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 1.3e-53 Identity = 107/144 (74.31%), Postives = 125/144 (86.81%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. TrEMBL
Match: A0A0B0NEE6_GOSAR (Ribosome biogenesis BRX1 OS=Gossypium arboreum GN=F383_18642 PE=4 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 1.3e-53 Identity = 107/144 (74.31%), Postives = 125/144 (86.81%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. TrEMBL
Match: A0A0D2PI01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 1.3e-53 Identity = 107/144 (74.31%), Postives = 125/144 (86.81%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. TrEMBL
Match: A0A078G9Z4_BRANA (BnaC01g36060D protein OS=Brassica napus GN=BnaC01g36060D PE=4 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 5.0e-53 Identity = 106/142 (74.65%), Postives = 116/142 (81.69%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. TAIR10
Match: AT3G15460.1 (AT3G15460.1 Ribosomal RNA processing Brix domain protein) HSP 1 Score: 208.8 bits (530), Expect = 2.4e-54 Identity = 103/142 (72.54%), Postives = 118/142 (83.10%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. TAIR10
Match: AT1G52930.1 (AT1G52930.1 Ribosomal RNA processing Brix domain protein) HSP 1 Score: 188.7 bits (478), Expect = 2.5e-48 Identity = 96/144 (66.67%), Postives = 114/144 (79.17%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. NCBI nr
Match: gi|778662534|ref|XP_011659901.1| (PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis sativus]) HSP 1 Score: 288.1 bits (736), Expect = 8.7e-75 Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. NCBI nr
Match: gi|659099573|ref|XP_008450669.1| (PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo]) HSP 1 Score: 264.6 bits (675), Expect = 1.0e-67 Identity = 129/142 (90.85%), Postives = 137/142 (96.48%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. NCBI nr
Match: gi|700211000|gb|KGN66096.1| (hypothetical protein Csa_1G570210 [Cucumis sativus]) HSP 1 Score: 230.7 bits (587), Expect = 1.6e-57 Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. NCBI nr
Match: gi|729347491|ref|XP_010542279.1| (PREDICTED: ribosome biogenesis protein BRX1-like [Tarenaya hassleriana]) HSP 1 Score: 218.0 bits (554), Expect = 1.1e-53 Identity = 107/142 (75.35%), Postives = 117/142 (82.39%), Query Frame = 1
BLAST of CSPI01G05380.1 vs. NCBI nr
Match: gi|729360173|ref|XP_010545808.1| (PREDICTED: ribosome biogenesis protein BRX1 [Tarenaya hassleriana]) HSP 1 Score: 217.6 bits (553), Expect = 1.4e-53 Identity = 107/142 (75.35%), Postives = 117/142 (82.39%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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