CSPI01G05380 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G05380
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRibosome biogenesis BRX1
LocationChr1 : 3478795 .. 3479687 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAGAAGAGGAAGCATAGTGAGTCTTTGCCGACGGTATCAGTTAAGAAGGACGATGATGCTCCGGAGAGACCTAAGCGGACACTCATGGGCTGGAAAGACAAAAAAGTGACAAAAGAGAGTGAAGTTGGTTCTGATCATGCTGTTTTTCGAAATAAAGAAAAGGTTCTCATCACGTGTTCCCGTCGAATCAATTTTAGGTATGTAATATAGTTGAAACAAGTTGTTGTAGCTTTTTGTAAAATATATTGTTATGTCTATACATGGTTAGGTAGTTTGCAGTATAACTTATCACCCAGTGACCAAATGTTTTTTGTTTTTATTTATTTAGTTTTTCTTCCCTTTAGAATTTTTGGCAATTTAACTTGTGATTGATTAGGTATTGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTTGAGGTCCAGCAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAAGGTTGTTCTTCCAGCCTATTTTTCGAGGTTAGAACCTTTTCATTGCACTGTCGTAATCTGGAATTTTTAAGGTACAATGTTTTCTAATTTTTATTTTTAATTAGATATAGGATGATAACATTTTGGTTTTATTCTTGTGGTGTATAACTTATAAGGATGTTTTAACTATCCTTTTGCTTTTCATTATATTACTTTCCTATATGGCCTTCTCATCATGTTTGTACATTGCGATCATATTTTTCCACTCATTGATATTTTTTTCTCTAATTCCAGTGCAGAAAACATAAAGATCTTTATCTATGTATGGCAAAGTGCCCTAGTGGGCCATCTGTGAAGTTTTTAGTTAATGCCATTTGTTTTCTCTATTGTTGATGACCATATCTGGTTCCGGAATTA

mRNA sequence

ATGGCAAAGAAGAGGAAGCATAGTGAGTCTTTGCCGACGGTATCAGTTAAGAAGGACGATGATGCTCCGGAGAGACCTAAGCGGACACTCATGGGCTGGAAAGACAAAAAAGTGACAAAAGAGAGTGAAGTTGGTTCTGATCATGCTGTTTTTCGAAATAAAGAAAAGGTTCTCATCACGTGTTCCCGTCGAATCAATTTTAGGTATTGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTTGAGGTCCAGCAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAAGGTTGTTCTTCCAGCCTATTTTTCGAGTGCAGAAAACATAAAGATCTTTATCTATGTATGGCAAAGTGCCCTAGTGGGCCATCTGTGAAGTTTTTAGTTAATGCCATTTGTTTTCTCTATTGTTGA

Coding sequence (CDS)

ATGGCAAAGAAGAGGAAGCATAGTGAGTCTTTGCCGACGGTATCAGTTAAGAAGGACGATGATGCTCCGGAGAGACCTAAGCGGACACTCATGGGCTGGAAAGACAAAAAAGTGACAAAAGAGAGTGAAGTTGGTTCTGATCATGCTGTTTTTCGAAATAAAGAAAAGGTTCTCATCACGTGTTCCCGTCGAATCAATTTTAGGTATTGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTTGAGGTCCAGCAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAAGGTTGTTCTTCCAGCCTATTTTTCGAGTGCAGAAAACATAAAGATCTTTATCTATGTATGGCAAAGTGCCCTAGTGGGCCATCTGTGAAGTTTTTAGTTAATGCCATTTGTTTTCTCTATTGTTGA
Homology
[Close]
BLAST of CSPI01G05380 vs. Swiss-Prot
Match: BRX1_RAT (Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.8e-17
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 1 

Query: 34  KDKKVTKESEVGSDH-------AVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKD 93
           K   V KE+E   D          ++NKE++LI  SR INFR  HLM ++  L+PH K D
Sbjct: 31  KQADVAKEAEEEKDRIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKAD 90

Query: 94  NKVELRSSKGATLNELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI 143
            K++ R  K   +NE+ E+K C+  ++FE +K +DLY+ ++  P GPS KFLV  I
Sbjct: 91  TKMD-RKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI 145

[Close]
BLAST of CSPI01G05380 vs. Swiss-Prot
Match: BRX1_BOVIN (Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-17
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 51  FRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSS 110
           ++NKE++LI  SR INFR  HLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 56  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 115

Query: 111 SLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI 143
            ++FE +K +DLY+ ++  P GPS KFLV  I
Sbjct: 116 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI 146

[Close]
BLAST of CSPI01G05380 vs. Swiss-Prot
Match: BRX1_HUMAN (Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-17
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 51  FRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSS 110
           ++NKE++LI  SR INFR  HLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 56  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 115

Query: 111 SLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI 143
            ++FE +K +DLY+ ++  P GPS KFLV  I
Sbjct: 116 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI 146

[Close]
BLAST of CSPI01G05380 vs. Swiss-Prot
Match: BRX1_MOUSE (Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1 PE=1 SV=3)

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-17
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 51  FRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSS 110
           ++NKE++LI  SR INFR  HLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 56  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 115

Query: 111 SLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI 143
            ++FE +K +DLY+ ++  P GPS KFLV  I
Sbjct: 116 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI 146

[Close]
BLAST of CSPI01G05380 vs. Swiss-Prot
Match: BRX1_PONAB (Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-17
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 51  FRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSS 110
           ++NKE++LI  SR INFR  HLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 56  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 115

Query: 111 SLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI 143
            ++FE +K +DLY+ ++  P GPS KFLV  I
Sbjct: 116 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI 146

[Close]
BLAST of CSPI01G05380 vs. TrEMBL
Match: A0A0A0M1K6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G570210 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.1e-57
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 1 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKE EVGSDHAVFRNKEKVLIT
Sbjct: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKEIEVGSDHAVFRNKEKVLIT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFE     
Sbjct: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFEDDNIL 120

Query: 121 DLYLCMAK 129
            L+L + K
Sbjct: 121 VLFLWLQK 128

[Close]
BLAST of CSPI01G05380 vs. TrEMBL
Match: A0A0D2SNA9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-53
Identity = 107/144 (74.31%), Postives = 125/144 (86.81%), Query Frame = 1 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKK-VTKESEVGSDHA-VFRNKEKVL 60
           M KKRKHSE+      KKD+ APERPKR+L GWKDK+ V +++E  +D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  ITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRK 120
           +TCSRRIN+RY HLMLNMVSLLPHCKKDNKVE RSSKGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLCMAKCPSGPSVKFLVNAI 143
           H+DLYL MA+CP+GPSVKFLVNA+
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAV 144

[Close]
BLAST of CSPI01G05380 vs. TrEMBL
Match: A0A0B0NEE6_GOSAR (Ribosome biogenesis BRX1 OS=Gossypium arboreum GN=F383_18642 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-53
Identity = 107/144 (74.31%), Postives = 125/144 (86.81%), Query Frame = 1 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKK-VTKESEVGSDHA-VFRNKEKVL 60
           M KKRKHSE+      KKD+ APERPKR+L GWKDK+ V +++E  +D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  ITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRK 120
           +TCSRRIN+RY HLMLNMVSLLPHCKKDNKVE RSSKGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLCMAKCPSGPSVKFLVNAI 143
           H+DLYL MA+CP+GPSVKFLVNA+
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAV 144

[Close]
BLAST of CSPI01G05380 vs. TrEMBL
Match: A0A0D2PI01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-53
Identity = 107/144 (74.31%), Postives = 125/144 (86.81%), Query Frame = 1 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKK-VTKESEVGSDHA-VFRNKEKVL 60
           M KKRKHSE+      KKD+ APERPKR+L GWKDK+ V +++E  +D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  ITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRK 120
           +TCSRRIN+RY HLMLNMVSLLPHCKKDNKVE RSSKGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLCMAKCPSGPSVKFLVNAI 143
           H+DLYL MA+CP+GPSVKFLVNA+
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAV 144

[Close]
BLAST of CSPI01G05380 vs. TrEMBL
Match: A0A078G9Z4_BRANA (BnaC01g36060D protein OS=Brassica napus GN=BnaC01g36060D PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 5.0e-53
Identity = 106/142 (74.65%), Postives = 116/142 (81.69%), Query Frame = 1 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           M KKRKHSE+      KKDD APERPKRTL+GWKDK    E    +  + FRNKEKVL+T
Sbjct: 1   MGKKRKHSETEAAAPAKKDDSAPERPKRTLLGWKDKNEDAEESKAASASGFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRI+FRY HLMLNMVSLLPHCKKD+KVE +SSKGATLNELVELKG SS LFFECRKHK
Sbjct: 61  CSRRISFRYRHLMLNMVSLLPHCKKDSKVEAKSSKGATLNELVELKGSSSCLFFECRKHK 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAI 143
           DLY+ M K PSGPSVKFLVNA+
Sbjct: 121 DLYMWMVKSPSGPSVKFLVNAV 142

[Close]
BLAST of CSPI01G05380 vs. TAIR10
Match: AT3G15460.1 (AT3G15460.1 Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 208.8 bits (530), Expect = 2.4e-54
Identity = 103/142 (72.54%), Postives = 118/142 (83.10%), Query Frame = 1 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           M +KRKHSE++    VK  D APERP+RTL+GWKDKK   E+   +  +VFRNKEKVL+T
Sbjct: 1   MGRKRKHSETVTAAPVK--DSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKD+KVE +SS+GATLNEL+ELKG SS LFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHK 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAI 143
           DLY+ M K P GPSVKFLVNA+
Sbjct: 121 DLYMWMVKSPGGPSVKFLVNAV 140

[Close]
BLAST of CSPI01G05380 vs. TAIR10
Match: AT1G52930.1 (AT1G52930.1 Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 188.7 bits (478), Expect = 2.5e-48
Identity = 96/144 (66.67%), Postives = 114/144 (79.17%), Query Frame = 1 

Query: 1   MAKKRKHSESLPTVSVKKDDD-APERPKRTLMGWKDKKVTK-ESEVGSDHAVFRNKEKVL 60
           M +KRKHSE+     VKK D+ AP+RPKRTL+GWKDK   + E       + F+NKEKVL
Sbjct: 1   MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKSEGEAEKAKALTSSGFKNKEKVL 60

Query: 61  ITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRK 120
           +TCSRRI+FRY  LMLN+VSLLPHCKKD+KVE +SSKGATLNEL+ELK  +S LFFECRK
Sbjct: 61  VTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFECRK 120

Query: 121 HKDLYLCMAKCPSGPSVKFLVNAI 143
           HKDLY+ M K P+GPSVKFLV A+
Sbjct: 121 HKDLYMWMVKSPNGPSVKFLVKAV 144

[Close]
BLAST of CSPI01G05380 vs. NCBI nr
Match: gi|778662534|ref|XP_011659901.1| (PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 8.7e-75
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKE EVGSDHAVFRNKEKVLIT
Sbjct: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKEIEVGSDHAVFRNKEKVLIT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAI 143
           DLYLCMAKCPSGPSVKFLVNA+
Sbjct: 121 DLYLCMAKCPSGPSVKFLVNAM 142

[Close]
BLAST of CSPI01G05380 vs. NCBI nr
Match: gi|659099573|ref|XP_008450669.1| (PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo])

HSP 1 Score: 264.6 bits (675), Expect = 1.0e-67
Identity = 129/142 (90.85%), Postives = 137/142 (96.48%), Query Frame = 1 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           MAKKRKHSE++PTVSVKKD++A ERPKRTLMGWKDK+VTK+SE GSDHAVFRNKEKVL+T
Sbjct: 1   MAKKRKHSETVPTVSVKKDENALERPKRTLMGWKDKEVTKKSEAGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKDNKVE RSSKGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAI 143
           DLYL MAKCPSGPSVKFLVNA+
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAV 142

[Close]
BLAST of CSPI01G05380 vs. NCBI nr
Match: gi|700211000|gb|KGN66096.1| (hypothetical protein Csa_1G570210 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 1.6e-57
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 1 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKE EVGSDHAVFRNKEKVLIT
Sbjct: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKEIEVGSDHAVFRNKEKVLIT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFE     
Sbjct: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFEDDNIL 120

Query: 121 DLYLCMAK 129
            L+L + K
Sbjct: 121 VLFLWLQK 128

[Close]
BLAST of CSPI01G05380 vs. NCBI nr
Match: gi|729347491|ref|XP_010542279.1| (PREDICTED: ribosome biogenesis protein BRX1-like [Tarenaya hassleriana])

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-53
Identity = 107/142 (75.35%), Postives = 117/142 (82.39%), Query Frame = 1 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           M KKRKHSE+      KK++DAPERPKRTL+GWKDK         S  +VFRNKEKVL+T
Sbjct: 1   MGKKRKHSETEAPAPAKKNEDAPERPKRTLLGWKDKNEVAVKSDPSSSSVFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKD+KVE +SSKGATLNELVELKGCSS LFFECRKH+
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSKGATLNELVELKGCSSCLFFECRKHQ 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAI 143
           DLYL M K P GPSVKFLVNA+
Sbjct: 121 DLYLWMVKSPQGPSVKFLVNAV 142

[Close]
BLAST of CSPI01G05380 vs. NCBI nr
Match: gi|729360173|ref|XP_010545808.1| (PREDICTED: ribosome biogenesis protein BRX1 [Tarenaya hassleriana])

HSP 1 Score: 217.6 bits (553), Expect = 1.4e-53
Identity = 107/142 (75.35%), Postives = 117/142 (82.39%), Query Frame = 1 

Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60
           M KKRKHSE+      KK+D APERPKRTL+GWKD+    E    S  +VFRNKEKVL+T
Sbjct: 1   MGKKRKHSETEAPAPEKKNDAAPERPKRTLLGWKDQDAVSEKSDPSSSSVFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKD+KVE +SSKGATLNELVELKGCSS LFFECRKH+
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSKGATLNELVELKGCSSCLFFECRKHQ 120

Query: 121 DLYLCMAKCPSGPSVKFLVNAI 143
           DLYL M K P GPSVKFLVNA+
Sbjct: 121 DLYLWMVKSPEGPSVKFLVNAV 142

The following BLAST results are available for this feature:
BLAST of CSPI01G05380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BRX1_RAT2.8e-1741.38Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1[more]
BRX1_BOVIN4.8e-1745.65Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1[more]
BRX1_HUMAN4.8e-1745.65Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2[more]
BRX1_MOUSE4.8e-1745.65Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1 PE=1 SV=3[more]
BRX1_PONAB4.8e-1745.65Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1[more]
BLAST of CSPI01G05380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M1K6_CUCSA1.1e-5791.41Uncharacterized protein OS=Cucumis sativus GN=Csa_1G570210 PE=4 SV=1[more]
A0A0D2SNA9_GOSRA1.3e-5374.31Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1[more]
A0A0B0NEE6_GOSAR1.3e-5374.31Ribosome biogenesis BRX1 OS=Gossypium arboreum GN=F383_18642 PE=4 SV=1[more]
A0A0D2PI01_GOSRA1.3e-5374.31Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1[more]
A0A078G9Z4_BRANA5.0e-5374.65BnaC01g36060D protein OS=Brassica napus GN=BnaC01g36060D PE=4 SV=1[more]
BLAST of CSPI01G05380 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G15460.12.4e-5472.54 Ribosomal RNA processing Brix domain protein[more]
AT1G52930.12.5e-4866.67 Ribosomal RNA processing Brix domain protein[more]
BLAST of CSPI01G05380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778662534|ref|XP_011659901.1|8.7e-7598.59PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis s... [more]
gi|659099573|ref|XP_008450669.1|1.0e-6790.85PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo][more]
gi|700211000|gb|KGN66096.1|1.6e-5791.41hypothetical protein Csa_1G570210 [Cucumis sativus][more]
gi|729347491|ref|XP_010542279.1|1.1e-5375.35PREDICTED: ribosome biogenesis protein BRX1-like [Tarenaya hassleriana][more]
gi|729360173|ref|XP_010545808.1|1.4e-5375.35PREDICTED: ribosome biogenesis protein BRX1 [Tarenaya hassleriana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007109Brix
IPR026532BRX1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0001510 RNA methylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G05380.1CSPI01G05380.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007109Brix domainPROFILEPS50833BRIXcoord: 55..147
score: 13
IPR026532Ribosome biogenesis protein BRX1PANTHERPTHR13634RIBOSOME BIOGENESIS PROTEIN BRIXcoord: 2..142
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G05380Wax gourdcpiwgoB034
CSPI01G05380Cucumber (Gy14) v1cgycpiB137
CSPI01G05380Cucurbita maxima (Rimu)cmacpiB208
CSPI01G05380Cucurbita maxima (Rimu)cmacpiB431
CSPI01G05380Cucurbita moschata (Rifu)cmocpiB195
CSPI01G05380Cucurbita moschata (Rifu)cmocpiB421
CSPI01G05380Cucumber (Chinese Long) v2cpicuB000
CSPI01G05380Melon (DHL92) v3.5.1cpimeB024
CSPI01G05380Watermelon (Charleston Gray)cpiwcgB059
CSPI01G05380Watermelon (97103) v1cpiwmB066
CSPI01G05380Cucurbita pepo (Zucchini)cpecpiB519
CSPI01G05380Cucurbita pepo (Zucchini)cpecpiB535
CSPI01G05380Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G05380Melon (DHL92) v3.6.1cpimedB023
CSPI01G05380Cucumber (Gy14) v2cgybcpiB001
CSPI01G05380Silver-seed gourdcarcpiB0421
CSPI01G05380Cucumber (Chinese Long) v3cpicucB001
CSPI01G05380Watermelon (97103) v2cpiwmbB055