CSPI01G03150.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G03150.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 1974290 .. 1975190 (+)
Sequence length	468

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCACATTAGCTTCTAATGATATTATTATACCTTTTGCAATAACAAGTTCTTTCTTTCTTTCTTTCTTTTTTTCTAGCTGTCTTCTGCTCACTGAAACGTCAGAGAATTTATTTGCCTTTTGATTTTCAGGTGGTGCAGTGAGGGTTTTTCTTTCAAAACTTGAAAAAAAAAATAAAAGAAAAAGAAAATTGGGCTCTTTTTTTGTAGCTTTCAGGTGTCTAAATTCAGCTTCCCCATTCATTAACCTTCCTCAATTCTGTTATTCATTCTTCTTCTTCTTCTCCTCCTTCTCCTTCTTTACCTTAAACTCCTCAAATTGCTTGTTGATTGTTATGGAACCTTCACAAATTTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCTCCTGCTAATGATGATTCAAGCGATGCAGCTTCTGATGATGATGATGAAGATGAAGAACATAAAGGTTATTATTATGCAGCAAATAACCATAATGATAGTGATGATGATTCCATGGCTTCTGATGCTTCTTCAGGTCCATGTCATCAAAAAGGTAATCATAATCCATTTAAAGGGATGAAAAATCCCAATGGTGAAATGAATTTTTGCTTAGAAACAACCAGAACTGTTAGGAAGCCATTAATGGAAAAGAAGAAGAAGCAAAGAGCTGAGAGAAAAGAAGTCCAAGTAGGACAAAAGCCTAAAACTTCAGTTCAAAGCAGTTCTAAGGTAAGAAAAAGTATCTTGATGAGTAAAAGAAACTAGCTAAGCTAGTTCCTCTTCTTTCTTTTATTTTTTTTGGCTATTTCATTTATGCTTTGTTGTAGGCTGAAAAAATGAACACATGGAAAAACATGAGCTGTTTCTTTTACAAGACAATATTTTGGTAG

mRNA sequence

ATGGAACCTTCACAAATTTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCTCCTGCTAATGATGATTCAAGCGATGCAGCTTCTGATGATGATGATGAAGATGAAGAACATAAAGGTTATTATTATGCAGCAAATAACCATAATGATAGTGATGATGATTCCATGGCTTCTGATGCTTCTTCAGGTCCATGTCATCAAAAAGGTAATCATAATCCATTTAAAGGGATGAAAAATCCCAATGGTGAAATGAATTTTTGCTTAGAAACAACCAGAACTGTTAGGAAGCCATTAATGGAAAAGAAGAAGAAGCAAAGAGCTGAGAGAAAAGAAGTCCAAGTAGGACAAAAGCCTAAAACTTCAGTTCAAAGCAGTTCTAAGGCTGAAAAAATGAACACATGGAAAAACATGAGCTGTTTCTTTTACAAGACAATATTTTGGTAG

Coding sequence (CDS)

ATGGAACCTTCACAAATTTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCTCCTGCTAATGATGATTCAAGCGATGCAGCTTCTGATGATGATGATGAAGATGAAGAACATAAAGGTTATTATTATGCAGCAAATAACCATAATGATAGTGATGATGATTCCATGGCTTCTGATGCTTCTTCAGGTCCATGTCATCAAAAAGGTAATCATAATCCATTTAAAGGGATGAAAAATCCCAATGGTGAAATGAATTTTTGCTTAGAAACAACCAGAACTGTTAGGAAGCCATTAATGGAAAAGAAGAAGAAGCAAAGAGCTGAGAGAAAAGAAGTCCAAGTAGGACAAAAGCCTAAAACTTCAGTTCAAAGCAGTTCTAAGGCTGAAAAAATGAACACATGGAAAAACATGAGCTGTTTCTTTTACAAGACAATATTTTGGTAG

Homology

[Close]

BLAST of CSPI01G03150.1 vs. TrEMBL
Match: A0A0A0LUQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014530 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.0e-68
Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 1


Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAANNHNDSD 60
           MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAANNHNDSD
Sbjct: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAANNHNDSD 60

Query: 61  DDSMASDASSGPCHQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKKKQRAERKEV 120
           DDSMASDASSGPCHQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKKKQRAERKEV
Sbjct: 61  DDSMASDASSGPCHQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKKKQRAERKEV 120

Query: 121 QVGQKPKTSVQSSSKAEK 139
           QVGQKPKTSVQSSSK  K
Sbjct: 121 QVGQKPKTSVQSSSKVRK 138

[Close]

BLAST of CSPI01G03150.1 vs. TrEMBL
Match: A0A061FYA0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014436 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-12
Identity = 68/159 (42.77%), Postives = 84/159 (52.83%), Query Frame = 1


Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAAN------ 60
           MEPS+I G +EECHSSESGWTMYIGSP          DDDD+D       YAAN      
Sbjct: 1   MEPSKILGGTEECHSSESGWTMYIGSPIQ------GGDDDDDDGHSDADAYAANYGGHAD 60

Query: 61  ----NHNDSDDDSMASDASSGPCHQ---KGNHNPFKGMKNPN----GEMNFCL--ETTRT 120
               NH    DDSMASDASSGP HQ    GN     G  + N    GE N+ L  E  ++
Sbjct: 61  ETEINHEADSDDSMASDASSGPSHQGHRYGNMEEGHGTSHLNDEVEGEGNYYLDKEAKKS 120

Query: 121 VRKPLMEKKKKQRAERKEVQVGQKPK--TSVQSSSKAEK 139
           + K  +  KKK+  E ++ ++  K K   + +S SK  K
Sbjct: 121 LEKQKLGMKKKEDKEDQKERMTLKAKGAATPRSGSKVRK 153

[Close]

BLAST of CSPI01G03150.1 vs. TrEMBL
Match: A0A0D2MM36_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G104300 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-12
Identity = 60/152 (39.47%), Postives = 84/152 (55.26%), Query Frame = 1


Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAA------- 60
           MEPS IFG +EECHSSESGWTMYIG  A DD  DA +D DD+D++  G  + +       
Sbjct: 1   MEPSNIFGGAEECHSSESGWTMYIGDAAADDDGDAGTDADDDDDDDDGDRFDSADESQTD 60

Query: 61  NNHNDSDDDSMASDASSGPCHQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKK-- 120
            NH    DDSMASDASSGP H+       +       E   C    +  +  +  K+K  
Sbjct: 61  ANHEAETDDSMASDASSGPSHR------LEQEVEGEEEGRHCYSDKKARKSSVGSKQKPE 120

Query: 121 -KQRAERKEVQVGQKPKTSVQSSSKAEKMNTW 143
            K++ +++E++  +  ++S QS S + K N W
Sbjct: 121 TKKKQDKEEMRRLKTKESSTQSPSGSRK-NIW 145

[Close]

BLAST of CSPI01G03150.1 vs. TrEMBL
Match: G7JT57_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g112870 PE=4 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 60/149 (40.27%), Postives = 78/149 (52.35%), Query Frame = 1


Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAANNHNDSD 60
           M+PS+IFG  EEC SSESGWTMYIGS   DD+      D D   + +G  + A+  +D  
Sbjct: 1   MKPSKIFGSEEECESSESGWTMYIGSHIEDDN----DGDIDNIMDDEGTTHQADPEDDES 60

Query: 61  DDSMASDASSGPCHQKGNHNPFKGM--------KNPNGEMNFCLETTRTVRKPLMEKKKK 120
           DDSM SDASSGP HQ G    FK +           + E  +CLE  +   K L +++  
Sbjct: 61  DDSMVSDASSGPIHQHGKDYGFKQVVVEVEVEENQYDDENKYCLE--KKANKTLEKQRNG 120

Query: 121 QRAERKEVQV---GQKPKTSVQSSSKAEK 139
           ++ E KE +      K K SVQ   K  K
Sbjct: 121 KKVENKEKKFEDGNGKGKPSVQGGGKVRK 143

[Close]

BLAST of CSPI01G03150.1 vs. TrEMBL
Match: A0A067JKM3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05808 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 60/151 (39.74%), Postives = 79/151 (52.32%), Query Frame = 1


Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAANNHN--- 60
           M  SQ FG  EECHSSESGWTMY+GS   DD  D   D D+ D +H G  Y  N +N   
Sbjct: 1   MGSSQFFGGKEECHSSESGWTMYLGSWVQDDGDD--DDGDNNDNDHHGGNYGKNKNNYYQ 60

Query: 61  -DSDDDSMASDASSGPCHQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKKKQRAE 120
            D  DDSMASDASSGP HQ  N +     ++ + + N    + R         K+KQ+ E
Sbjct: 61  EDDSDDSMASDASSGPSHQVKNED-----EDDDDDHNGKYHSER------KNNKEKQKTE 120

Query: 121 RKEVQVGQKPKTSVQSSSKAEKMNTWKNMSC 148
           R   + G++ +     + KA+  N +   SC
Sbjct: 121 RIRKKNGKEAEVE-SMARKADNNNYFPAQSC 137

[Close]

BLAST of CSPI01G03150.1 vs. TAIR10
Match: AT5G08150.1 (AT5G08150.1 suppressor of phytochrome b 5)

HSP 1 Score: 57.4 bits (137), Expect = 9.2e-09
Identity = 45/110 (40.91%), Postives = 53/110 (48.18%), Query Frame = 1


Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAANNHNDSD 60
           ME + IFG  E+C S ESGWTMY+ S ++D   D    DDDE+EE            DSD
Sbjct: 1   MESANIFGSDEDCRSCESGWTMYLASQSHDRDDDCYYGDDDEEEE------------DSD 60

Query: 61  -DDSMASDASSGP---------CHQKGNHNPFKGMKNPNGEMNFCLETTR 101
             DSM SDASSGP           +    N  K  K    E    +ETTR
Sbjct: 61  GGDSMDSDASSGPMEATSYLKLAQEIEEQNSIKKKKKKTNEEMVLVETTR 98

[Close]

BLAST of CSPI01G03150.1 vs. NCBI nr
Match: gi|778656162|ref|XP_011648559.1| (PREDICTED: uncharacterized protein LOC105434528 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 2.8e-68
Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 1


Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAANNHNDSD 60
           MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAANNHNDSD
Sbjct: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAANNHNDSD 60

Query: 61  DDSMASDASSGPCHQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKKKQRAERKEV 120
           DDSMASDASSGPCHQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKKKQRAERKEV
Sbjct: 61  DDSMASDASSGPCHQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKKKQRAERKEV 120

Query: 121 QVGQKPKTSVQSSSKAEK 139
           QVGQKPKTSVQSSSK  K
Sbjct: 121 QVGQKPKTSVQSSSKVRK 138

[Close]

BLAST of CSPI01G03150.1 vs. NCBI nr
Match: gi|659106443|ref|XP_008453328.1| (PREDICTED: uncharacterized protein LOC103494080 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 3.5e-66
Identity = 133/138 (96.38%), Postives = 135/138 (97.83%), Query Frame = 1


Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAANNHNDSD 60
           MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDD+DEEHKGYYYAANNHNDSD
Sbjct: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDKDEEHKGYYYAANNHNDSD 60

Query: 61  DDSMASDASSGPCHQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKKKQRAERKEV 120
           DDSMASDASSGP HQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKKKQRAERKEV
Sbjct: 61  DDSMASDASSGPSHQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKKKQRAERKEV 120

Query: 121 QVGQKPKTSVQSSSKAEK 139
           +VGQKPKTSVQSSSK  K
Sbjct: 121 KVGQKPKTSVQSSSKVRK 138

[Close]

BLAST of CSPI01G03150.1 vs. NCBI nr
Match: gi|1009179984|ref|XP_015871382.1| (PREDICTED: trigger factor-like [Ziziphus jujuba])

HSP 1 Score: 82.0 bits (201), Expect = 9.9e-13
Identity = 66/152 (43.42%), Postives = 86/152 (56.58%), Query Frame = 1


Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDD---SSDAASDDD----DEDEEHKGYYYAA 60
           M+ SQ FG +EEC SSESGWTMYIGSP +DD    SD A +DD    D D++        
Sbjct: 2   MDSSQSFGGAEECQSSESGWTMYIGSPIHDDDQYGSDYADNDDGGTNDGDDDDNSDADHH 61

Query: 61  NNHNDSDDDSMASDASSGPCH-QKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKKK 120
           N+ NDS DDSMASDASSGP H  + N N     +    +  +C+      +KP MEK ++
Sbjct: 62  NDENDS-DDSMASDASSGPSHLGRTNGNAVFKDEEEENDGKYCI-IDEKAKKPSMEKMQR 121

Query: 121 QRAERKE--VQVGQKPKTSVQSSSKAEKMNTW 143
               RKE  V +G+K K  VQ+ +K  +   W
Sbjct: 122 SAERRKEEMVFMGRKAKAPVQNGAKKVQKTIW 151

[Close]

BLAST of CSPI01G03150.1 vs. NCBI nr
Match: gi|823145175|ref|XP_012472463.1| (PREDICTED: cation channel sperm-associated protein 2-like [Gossypium raimondii])

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12
Identity = 60/152 (39.47%), Postives = 84/152 (55.26%), Query Frame = 1


Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAA------- 60
           MEPS IFG +EECHSSESGWTMYIG  A DD  DA +D DD+D++  G  + +       
Sbjct: 1   MEPSNIFGGAEECHSSESGWTMYIGDAAADDDGDAGTDADDDDDDDDGDRFDSADESQTD 60

Query: 61  NNHNDSDDDSMASDASSGPCHQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKK-- 120
            NH    DDSMASDASSGP H+       +       E   C    +  +  +  K+K  
Sbjct: 61  ANHEAETDDSMASDASSGPSHR------LEQEVEGEEEGRHCYSDKKARKSSVGSKQKPE 120

Query: 121 -KQRAERKEVQVGQKPKTSVQSSSKAEKMNTW 143
            K++ +++E++  +  ++S QS S + K N W
Sbjct: 121 TKKKQDKEEMRRLKTKESSTQSPSGSRK-NIW 145

[Close]

BLAST of CSPI01G03150.1 vs. NCBI nr
Match: gi|590669210|ref|XP_007037710.1| (Uncharacterized protein TCM_014436 [Theobroma cacao])

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12
Identity = 68/159 (42.77%), Postives = 84/159 (52.83%), Query Frame = 1


Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAAN------ 60
           MEPS+I G +EECHSSESGWTMYIGSP          DDDD+D       YAAN      
Sbjct: 1   MEPSKILGGTEECHSSESGWTMYIGSPIQ------GGDDDDDDGHSDADAYAANYGGHAD 60

Query: 61  ----NHNDSDDDSMASDASSGPCHQ---KGNHNPFKGMKNPN----GEMNFCL--ETTRT 120
               NH    DDSMASDASSGP HQ    GN     G  + N    GE N+ L  E  ++
Sbjct: 61  ETEINHEADSDDSMASDASSGPSHQGHRYGNMEEGHGTSHLNDEVEGEGNYYLDKEAKKS 120

Query: 121 VRKPLMEKKKKQRAERKEVQVGQKPK--TSVQSSSKAEK 139
           + K  +  KKK+  E ++ ++  K K   + +S SK  K
Sbjct: 121 LEKQKLGMKKKEDKEDQKERMTLKAKGAATPRSGSKVRK 153

The following BLAST results are available for this feature:

BLAST of CSPI01G03150.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G03150.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUQ4_CUCSA	2.0e-68	98.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014530 PE=4 SV=1	[more]
A0A061FYA0_THECC	2.6e-12	42.77	Uncharacterized protein OS=Theobroma cacao GN=TCM_014436 PE=4 SV=1	[more]
A0A0D2MM36_GOSRA	2.6e-12	39.47	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G104300 PE=4 SV=1	[more]
G7JT57_MEDTR	1.1e-10	40.27	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g112870 PE=4 SV=2	[more]
A0A067JKM3_JATCU	1.9e-10	39.74	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05808 PE=4 SV=1	[more]

BLAST of CSPI01G03150.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08150.1	9.2e-09	40.91	suppressor of phytochrome b 5	[more]

BLAST of CSPI01G03150.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656162\|ref\|XP_011648559.1\|	2.8e-68	98.55	PREDICTED: uncharacterized protein LOC105434528 [Cucumis sativus]	[more]
gi\|659106443\|ref\|XP_008453328.1\|	3.5e-66	96.38	PREDICTED: uncharacterized protein LOC103494080 [Cucumis melo]	[more]
gi\|1009179984\|ref\|XP_015871382.1\|	9.9e-13	43.42	PREDICTED: trigger factor-like [Ziziphus jujuba]	[more]
gi\|823145175\|ref\|XP_012472463.1\|	3.8e-12	39.47	PREDICTED: cation channel sperm-associated protein 2-like [Gossypium raimondii]	[more]
gi\|590669210\|ref\|XP_007037710.1\|	3.8e-12	42.77	Uncharacterized protein TCM_014436 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G03150	CSPI01G03150	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G03150.1	CSPI01G03150.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G03150.1.utr5p1	CSPI01G03150.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G03150.1.cds1	CSPI01G03150.1.cds1	CDS
CSPI01G03150.1.cds2	CSPI01G03150.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33347	FAMILY NOT NAMED	coord: 2..146 score: 4.1
None	No IPR available	PANTHER	PTHR33347:SF6	SUBFAMILY NOT NAMED	coord: 2..146 score: 4.1