CSPI01G02810.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G02810.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 1781141 .. 1781489 (+)
Sequence length	228

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGAGAGTGACACCAACAAAACTGAACAGATGAACGAGAATGGCACCAACAAAGATCGTGTGCGATACAAAACGTGTGAGATGGAAGGGAGCAAAATGGTCGCTTTTTCACACGTGTGAGTACATTTTGGTAATTACACGTCAACTATGAGTTATTCCACGTATTTAAAAAAGTAAGGGATGATTTCACATATTTATAATTTTGAGGTCTAACCATCAGGTGGACTCAGTAAATTTGAGCGCGAATCCAACCGAACCCCCATCAAAGCGCCATATTAAAGTCTCTCCGGTTGGCGGCAACTCATCGCCGGCGTCTTCCACCTTCCGAGTCTTGCGGCAACACTGA

mRNA sequence

ATGGACGAGAGTGACACCAACAAAACTGAACAGATGAACGAGAATGGCACCAACAAAGATCGTGTGCGATACAAAACGTGTGAGATGGAAGGGAGCAAAATGGTGGACTCAGTAAATTTGAGCGCGAATCCAACCGAACCCCCATCAAAGCGCCATATTAAAGTCTCTCCGGTTGGCGGCAACTCATCGCCGGCGTCTTCCACCTTCCGAGTCTTGCGGCAACACTGA

Coding sequence (CDS)

ATGGACGAGAGTGACACCAACAAAACTGAACAGATGAACGAGAATGGCACCAACAAAGATCGTGTGCGATACAAAACGTGTGAGATGGAAGGGAGCAAAATGGTGGACTCAGTAAATTTGAGCGCGAATCCAACCGAACCCCCATCAAAGCGCCATATTAAAGTCTCTCCGGTTGGCGGCAACTCATCGCCGGCGTCTTCCACCTTCCGAGTCTTGCGGCAACACTGA

Homology

[Close]

BLAST of CSPI01G02810.1 vs. TrEMBL
Match: A0A0A0LUM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G013200 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-30
Identity = 73/82 (89.02%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MDESDTNKTEQMNENGTNKDRVRYKTCEMEGSKMV-------DSVNLSANPTEPPSKRHI 60
          MD+SDTNKTEQMNENGTNKDRVRY+TCEMEGSKMV       DSVNLSANPTEPPSKRHI
Sbjct: 1  MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHI 60

Query: 61 KVSPVGGNSSPASSTFRVLRQH 76
          KVSPVGGNSSPASSTFRVLRQH
Sbjct: 61 KVSPVGGNSSPASSTFRVLRQH 82

[Close]

BLAST of CSPI01G02810.1 vs. NCBI nr
Match: gi|700208625|gb|KGN63721.1| (hypothetical protein Csa_1G013200 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-30
Identity = 73/82 (89.02%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MDESDTNKTEQMNENGTNKDRVRYKTCEMEGSKMV-------DSVNLSANPTEPPSKRHI 60
          MD+SDTNKTEQMNENGTNKDRVRY+TCEMEGSKMV       DSVNLSANPTEPPSKRHI
Sbjct: 1  MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHI 60

Query: 61 KVSPVGGNSSPASSTFRVLRQH 76
          KVSPVGGNSSPASSTFRVLRQH
Sbjct: 61 KVSPVGGNSSPASSTFRVLRQH 82

The following BLAST results are available for this feature:

BLAST of CSPI01G02810.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G02810.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUM7_CUCSA	1.4e-30	89.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G013200 PE=4 SV=1	[more]

BLAST of CSPI01G02810.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G02810.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208625\|gb\|KGN63721.1\|	2.0e-30	89.02	hypothetical protein Csa_1G013200 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G02810	CSPI01G02810	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G02810.1	CSPI01G02810.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G02810.1.cds1	CSPI01G02810.1.cds1	CDS
CSPI01G02810.1.cds2	CSPI01G02810.1.cds2	CDS