CSPI01G01680.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G01680.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Succinate dehydrogenase subunit 7, mitochondrial
Location	Chr1 : 1120897 .. 1124711 (-)
Sequence length	303

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTTTCCTCAACAAATCCACTCTTGCCTCTCATTTCCGATCTCAATCTCAGGTTCTTTCTCCCTCAATCCCTTCTTTCTTTATCTCTTCCTTCAATCTTTTCACCTTTTGGCCCATCCACAGGTGGATCCTTCCTCACTTTCTCGACGTGGATTCCACGTCGAACCAGGGACTCGTGAAAAGGCTGTAAGCATATCTATCTATCTTCTTATTTTCCATCTTTAATTGTTATTCTACCTGTTTATTGCATCGGTTTGGATATTTAGTTAATTCCTTGTTTACCTCATACTAGCTCCATTAAGTTGATTGATCTCTCGTATGTATTTGAATTTTTCCATGTCAGTATAGATGGAACTTTTTCGAAGCTGTTCAGATCGAACTGCTTGAGCTTCTACATTTAGGTTCATGAAATTGACGGCTGCTGTTTTCTACATTAATCTGTTACGATGCTATGGCATGAAACCTTTGTGATTTTTTTTTTCTTTTATTGGTTGTGAATATTAAAGGGTTGATTTGCATGCGTGTTCTCGAACTTTGCAACTATACATTCCACACCGATACTTGGAAATTGGAACTATTTTAGAAAATATATATTCCCTTCATTTCGCGAAGGATTTTGCTATACATGTGGATAGGTTAACATGTCTACCAAAATCTTGGTTCATCTCTTGTATTTTGTTGATGCACTTTTGTTGCTGTGTATGTGATTGCAATGACTTATTGGCATTGAATTTTATTATGTTGAATGTCTGGCAGTTATTAGCTGAGGACCCTTGTCTTAGGCGGTTCAGATCACATAAGAAAGCTGTCTCTCGACTCAAAAGAGTTGGAGATGTTTTGACAATTGTGGTTGTTGCAGGTATTGGCCCTTTTTTCTTTTAATAAATAAAATATGTTTCTCTTTGTCCCGTGGGGTTCTTGCTCTGCTCTTTTTGCCATTATAGCTACACATGTGATTGGTGTGTGTGTGGATGAAACTTTTGGATGGTGTATTTCCTTATTGTGTTACAAGAATGTCACGTCTTTACTTGCTCCTTAGAGGTGAAAATTAGCTCTAGCCATTTTGGTTCGGTTAATTCTTAGTATTGTATTAGCTGAAAAGTATCTTAGGTGAACTCAGAAGGTAGAAATAATACCTACTGAAGTGGAAGAAAGGGGCAGCAGCTTGTATGGGGTGTTTTTAGTAGAAACGTTGGGTTTCAATGACTGCAAAAGAAGAAACTTGAGACTCAAATTTAGAACAAAGTAGTGTTTAGTTAAATAAGTGCCAATGTTTAAGTTGATCGAAATTTTGGATTTATCTTATAAGAACTTTTACTGATATGTGAATTTTGGAGATGGTATTTCTTTTAGTACTAACGATCATTTAAACATGCCACTCCGTTGACCAATTCAGGTACAGGTTTTCTTAATTTAGGATAGTAGTGACTGCCAGATTAATATTAGTTTCATTTACAGTTTAGTGGCCTCAACCTTGAGTTCTATCTAAGGATGTTATTAGGTGATACAGCTAGCTAATAACAGTTCAATTGAAAGTCTAAGTAGCTATTTTTCCTGTTTATTTAAGTATCATGATGACACTTGGTCGTAGACAATAGATCAACTGGTAAATGCACATACAAGTTACTTATTTTCTTTGCAATTTTGATTCTCTTTACAATAAAAAGTAGAAGAGGAGGAATACAATCAAATTCTTCAAGATATTATATAACAAACAGGATAATAATGTAGTATGACTCTCCTTGAAGAGAACAGCAAAACAAAACACTCTTCCAGACATTGTTCATATGAGCTTTTCTGTCTTCAAAAGATTCTTCTCGTTCTTTCTTTTTAGTTCCCTTAATTCTCAACAAAAACTGGAATAACTATACTGAATATGATCTTGGTTGCCAGTGATGCCAATTGCCGCCATATAATTTGGGGTCCTTAATAATTCTGCAGAAGCCCAATCAGGTTAAAGATTTTCGGCTACTTCCATTGAAGTGGTCAAGAGACCAACTTCTAGGGACCTGGTAATCTAGTTCTCCAATGAGCTTTCACCACCTTGAGGTTTCATGTGTGTGCTCGTGGACACTCATATATATATGAAAATATGTCTGTCAAGCAGGTCATGAGTGTTGATTGATCTGCGAAGCAGTAAGAAAATGAAGATTGAAGACCACCTCTAAGCTGCACATCATATTCACCAACTTATTAGGCAATTCTGCGTTTCCATAGTTTGATTCAGCAATATTGCATTAGTTGAACTTGATATTAGCTTCCAGCCTCCATATGCTAGAGCCTAGTGCCCTCATCTCCAAAAACATTCGTAAGGATGCCAATAATGCTTCTCTATTATTCAGATTTCTCCAAAAATGTCAATTCAAACTTGTAGAAAACGAACAGTTTAAGTTTAACGGTAAGTCCAGTGAAGCGTGGGCAATATCTTGTTTGCTGTGCCTAAGTCAACTGAGCTCGTACACTAACATTTGATCTCCCCAAAATCTTTATTTCCATGACTAGAATGTGGACAGTGAAGCTTTTCTCTCTCCAGTTTTGAGTGCCTCACATTTGCGCTAGGTTGCTGTTAGGAACCAAGGTAGTTATGAGACGCCTTTGTATTGTAGGAACGAAGGTAGGTATGCGATGCTTTGTGTCCCCATCATTAGAATGGGATGACCAATATGGTATTCAAGTGGCTTGGCTCTCCCATCTCAATAGCTGGATTTTGGGATGTAGTTCTCTAAGGTGCTTAAGTACCTAACAATAGTATCAGAGCTGGTTGTCAATGTTTCAGAGTGGAACCGGTGGGACATCGACTTTCCGGGAATGGGTACTGTTAGAAATCAAGGTAGTTATGGGATTACCAATATGGTACTTAAGCGGCTTGGCTCTCCCACCCCAATTGTTGACTTGGGGTGTGGTTCTCCAAGGTGCTTAAGGTACCTAACAGCTGCCTGATGTGTGAATTGGCATGATGTCGAAACATCTTTGATTTTTTTCCTCTTTTGATGTTCTTTGTTCTGAGCTCTCCCGGTCATTAGAAGGTTCTTTTTTTCTTCCTTATTTTAATTTCTGCAATGTTACCATTATCTTTGTTTTTATTTCAAGAAATAAAAACATTCATTATCAAAGGGATATACAAAAAGATGGGGGAAATGGGATAAATCCACACATCAAGTATAGGAGGGTAAAATTTTCAATATATGACAGTACTTCCAGTTTTTCCTGAAAATATTTTGGTTAGGTGGTTAAGTGAAGCTTGGGAGTGAAAGCGTCAAGATCTGTTTTGTGGGCCACTTGTTTAGAAAGAAATGACACAATTTCTAACACAACATGCATAGCATTTTAAGAGATGGAAAGTTTCTCTGGTCAAAATCTTACAAATCATTCGTTAATTTATCCTCTTTCGTCAAGGGTATTCTTTTGTTCTTTTATCTACCCATGTTCGATGGTAGGAAGGATATCTTTTAAGGGATGTTTGGTCTACCAACTTATAACTCAATTCACTAGCTTCATTAGTGTTCGTTATTGAAGTTTGTACTATATCTTCTCTTCTAGACTAAACAACTCTACACTCTAAACATGGATTTCATAACTTCAATATGTTAACTCTCAACTTACAACTCAACTCAACCCACCAAACACCTCCTTAGTATCTCTTCCATTCCTTTGAATGACATTTTTACATCTTTTATTTCCCCACCCCCAAAATAAACAAATCTTTGATCTCTATCATCATATTTTTCAGGATGTTGCTATGAAATCTATGTGAAAGCGACCATGCGAGAAGAAGCTCGACGACAGGCAAAGACAGGTAGCGGAAGTACA

mRNA sequence

ATGGCGTTTTTCCTCAACAAATCCACTCTTGCCTCTCATTTCCGATCTCAATCTCAGGTGGATCCTTCCTCACTTTCTCGACGTGGATTCCACGTCGAACCAGGGACTCGTGAAAAGGCTTTATTAGCTGAGGACCCTTGTCTTAGGCGGTTCAGATCACATAAGAAAGCTGTCTCTCGACTCAAAAGAGTTGGAGATGTTTTGACAATTGTGGTTGTTGCAGGATGTTGCTATGAAATCTATGTGAAAGCGACCATGCGAGAAGAAGCTCGACGACAGGCAAAGACAGGTAGCGGAAGTACA

Coding sequence (CDS)

ATGGCGTTTTTCCTCAACAAATCCACTCTTGCCTCTCATTTCCGATCTCAATCTCAGGTGGATCCTTCCTCACTTTCTCGACGTGGATTCCACGTCGAACCAGGGACTCGTGAAAAGGCTTTATTAGCTGAGGACCCTTGTCTTAGGCGGTTCAGATCACATAAGAAAGCTGTCTCTCGACTCAAAAGAGTTGGAGATGTTTTGACAATTGTGGTTGTTGCAGGATGTTGCTATGAAATCTATGTGAAAGCGACCATGCGAGAAGAAGCTCGACGACAGGCAAAGACAGGTAGCGGAAGTACA

Homology

[Close]

BLAST of CSPI01G01680.1 vs. Swiss-Prot
Match: SDH7B_ARATH (Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana GN=SDH7B PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-30
Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 1


Query: 1  MAFFLNKSTLASHFRSQSQV---DPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKA 60
          MAF LN ++++SH RS S     D  S+SRRGFH+EPGTREKALLAED  L+RF+SHKK+
Sbjct: 1  MAFLLNNASISSHLRSSSSQKTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKS 60

Query: 61 VSRLKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKT 97
          V +LKR+GDVLT+VVVAGCCYEIYVKA M++EA    K+
Sbjct: 61 VHKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEALAAGKS 99

[Close]

BLAST of CSPI01G01680.1 vs. Swiss-Prot
Match: SDH7A_ARATH (Succinate dehydrogenase subunit 7A, mitochondrial OS=Arabidopsis thaliana GN=SDH7A PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 8.6e-26
Identity = 64/93 (68.82%), Postives = 73/93 (78.49%), Query Frame = 1


Query: 1  MAFFLNKSTLASHFRSQSQVDPSSL--SRRGFHVEPGTREKALLAEDPCLRRFRSHKKAV 60
          MAF LN S ++SH RS SQ    +L  SRRGFHVE G REKALLAED  LRRF+SHKK V
Sbjct: 1  MAFLLNTS-ISSHLRSSSQKTDGALAQSRRGFHVELGAREKALLAEDASLRRFKSHKKGV 60

Query: 61 SRLKRVGDVLTIVVVAGCCYEIYVKATMREEAR 92
           RLKR+GDVLT+VVVAGCCYEIY +  MR+EA+
Sbjct: 61 HRLKRIGDVLTVVVVAGCCYEIYAR-VMRKEAQ 91

[Close]

BLAST of CSPI01G01680.1 vs. Swiss-Prot
Match: SDH7_ORYSJ (Succinate dehydrogenase subunit 7, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH7 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-11
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 1


Query: 8  STLASHFRSQSQVDPS----SLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSRLKR 67
          S L S  RS     P+       RRGFHVE G REKALL ED  L+RF+S+K +V ++ +
Sbjct: 8  SALRSRLRSPQPQAPALPHLQPPRRGFHVELGAREKALLEEDTALKRFKSYKNSVKQVSK 67

Query: 68 VGDVLTIVVVAGCCYEIYVKA 85
          VG++LT VV+  C YEI   A
Sbjct: 68 VGNILTGVVLFACAYEIVALA 88

[Close]

BLAST of CSPI01G01680.1 vs. TrEMBL
Match: A0A0A0LUC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G005670 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MAFFLNKSTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSR 60
          MAFFLNKSTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSR
Sbjct: 1  MAFFLNKSTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSR 60

Query: 61 LKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKTG 98
          LKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKTG
Sbjct: 61 LKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKTG 97

[Close]

BLAST of CSPI01G01680.1 vs. TrEMBL
Match: D7SHW9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g07810 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.6e-32
Identity = 75/96 (78.12%), Postives = 82/96 (85.42%), Query Frame = 1


Query: 1  MAFFLNKSTLASHFRSQSQV--DPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAV 60
          MAF LNK+T  SHFRS SQ   D  SLSRRGFHVEPG REKALLA++P L+RF+SHK+ V
Sbjct: 1  MAFLLNKATALSHFRSHSQKTEDSFSLSRRGFHVEPGPREKALLADNPSLKRFKSHKRNV 60

Query: 61 SRLKRVGDVLTIVVVAGCCYEIYVKATMREEARRQA 95
           RLKRVGDVLTIVVVAGCCYEIYVKA MREEAR+QA
Sbjct: 61 WRLKRVGDVLTIVVVAGCCYEIYVKAVMREEARKQA 96

[Close]

BLAST of CSPI01G01680.1 vs. TrEMBL
Match: A0A061FTE5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011992 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 8.1e-31
Identity = 72/102 (70.59%), Postives = 82/102 (80.39%), Query Frame = 1


Query: 1   MAFFLNKSTLASHFRSQSQVDPSSLSR--RGFHVEPGTREKALLAEDPCLRRFRSHKKAV 60
           MAFFL KS+LA+HFRS  Q    SL+   R  HVEPG RE+ALLAEDP LRRF+S+KK+V
Sbjct: 1   MAFFLKKSSLANHFRSSYQKTEGSLAAPSRALHVEPGARERALLAEDPSLRRFKSYKKSV 60

Query: 61  SRLKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKTGSGS 101
            R+KR+GDVLT+VVVAGCCYEIYVKA MREEAR QAK   GS
Sbjct: 61  WRVKRIGDVLTVVVVAGCCYEIYVKAVMREEARNQAKAAGGS 102

[Close]

BLAST of CSPI01G01680.1 vs. TrEMBL
Match: A9P9R2_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.8e-30
Identity = 70/91 (76.92%), Postives = 79/91 (86.81%), Query Frame = 1


Query: 6  NKSTLASHFRSQSQVDPS-SLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSRLKRV 65
          N ST+ SH+RSQSQ   + SLSRRGFHVEPG RE+ALLAEDP L+RF+SHKK+V RLKR 
Sbjct: 7  NYSTITSHYRSQSQTQGAFSLSRRGFHVEPGPREQALLAEDPSLKRFKSHKKSVWRLKRF 66

Query: 66 GDVLTIVVVAGCCYEIYVKATMREEARRQAK 96
          GDVLT+VVVAGCCYEIYVK  MREEAR+QAK
Sbjct: 67 GDVLTLVVVAGCCYEIYVKTVMREEARKQAK 97

[Close]

BLAST of CSPI01G01680.1 vs. TrEMBL
Match: A9PJS2_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.8e-30
Identity = 70/91 (76.92%), Postives = 79/91 (86.81%), Query Frame = 1


Query: 6  NKSTLASHFRSQSQVDPS-SLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSRLKRV 65
          N ST+ SH+RSQSQ   + SLSRRGFHVEPG RE+ALLAEDP L+RF+SHKK+V RLKR 
Sbjct: 7  NYSTITSHYRSQSQTQGAFSLSRRGFHVEPGPREQALLAEDPSLKRFKSHKKSVWRLKRF 66

Query: 66 GDVLTIVVVAGCCYEIYVKATMREEARRQAK 96
          GDVLT+VVVAGCCYEIYVK  MREEAR+QAK
Sbjct: 67 GDVLTLVVVAGCCYEIYVKTVMREEARKQAK 97

[Close]

BLAST of CSPI01G01680.1 vs. TAIR10
Match: AT5G62575.2 (AT5G62575.2 unknown protein)

HSP 1 Score: 133.3 bits (334), Expect = 8.6e-32
Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 1


Query: 1  MAFFLNKSTLASHFRSQSQV---DPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKA 60
          MAF LN ++++SH RS S     D  S+SRRGFH+EPGTREKALLAED  L+RF+SHKK+
Sbjct: 1  MAFLLNNASISSHLRSSSSQKTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKS 60

Query: 61 VSRLKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKT 97
          V +LKR+GDVLT+VVVAGCCYEIYVKA M++EA    K+
Sbjct: 61 VHKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEALAAGKS 99

[Close]

BLAST of CSPI01G01680.1 vs. TAIR10
Match: AT3G47833.1 (AT3G47833.1 unknown protein)

HSP 1 Score: 117.5 bits (293), Expect = 4.9e-27
Identity = 64/93 (68.82%), Postives = 73/93 (78.49%), Query Frame = 1


Query: 1  MAFFLNKSTLASHFRSQSQVDPSSL--SRRGFHVEPGTREKALLAEDPCLRRFRSHKKAV 60
          MAF LN S ++SH RS SQ    +L  SRRGFHVE G REKALLAED  LRRF+SHKK V
Sbjct: 1  MAFLLNTS-ISSHLRSSSQKTDGALAQSRRGFHVELGAREKALLAEDASLRRFKSHKKGV 60

Query: 61 SRLKRVGDVLTIVVVAGCCYEIYVKATMREEAR 92
           RLKR+GDVLT+VVVAGCCYEIY +  MR+EA+
Sbjct: 61 HRLKRIGDVLTVVVVAGCCYEIYAR-VMRKEAQ 91

[Close]

BLAST of CSPI01G01680.1 vs. NCBI nr
Match: gi|449440710|ref|XP_004138127.1| (PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MAFFLNKSTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSR 60
           MAFFLNKSTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSR
Sbjct: 1   MAFFLNKSTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSR 60

Query: 61  LKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKTGSGST 102
           LKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKTGSGST
Sbjct: 61  LKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKTGSGST 101

[Close]

BLAST of CSPI01G01680.1 vs. NCBI nr
Match: gi|700208510|gb|KGN63606.1| (hypothetical protein Csa_1G005670 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 1.5e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MAFFLNKSTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSR 60
          MAFFLNKSTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSR
Sbjct: 1  MAFFLNKSTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSR 60

Query: 61 LKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKTG 98
          LKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKTG
Sbjct: 61 LKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKTG 97

[Close]

BLAST of CSPI01G01680.1 vs. NCBI nr
Match: gi|659105547|ref|XP_008453123.1| (PREDICTED: uncharacterized protein LOC103493932 [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-42
Identity = 95/102 (93.14%), Postives = 97/102 (95.10%), Query Frame = 1


Query: 1   MAFFLNKSTLASHFRSQSQVDPSSL-SRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVS 60
           MAFFLNKSTLASHFRSQSQVDPSSL SRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVS
Sbjct: 1   MAFFLNKSTLASHFRSQSQVDPSSLSSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVS 60

Query: 61  RLKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKTGSGST 102
           RLK  GDVLTIVV+AGCCYEIYVKATMR+EA RQAKTGS ST
Sbjct: 61  RLKTFGDVLTIVVIAGCCYEIYVKATMRQEA-RQAKTGSEST 101

[Close]

BLAST of CSPI01G01680.1 vs. NCBI nr
Match: gi|802652520|ref|XP_012080126.1| (PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas])

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-34
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = 1


Query: 1  MAFFLNKSTLASHFRSQSQVDPS-SLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVS 60
          MAF LN ST++SHFRSQSQ   S SLSRRGFHVEPG REKALLAEDP L+RF+SHKK+V 
Sbjct: 1  MAFLLNNSTISSHFRSQSQTQDSLSLSRRGFHVEPGVREKALLAEDPVLKRFKSHKKSVW 60

Query: 61 RLKRVGDVLTIVVVAGCCYEIYVKATMREEARRQ 94
          RLKRVGDVLTIVVVAGCCYEIYVKA MREEARR+
Sbjct: 61 RLKRVGDVLTIVVVAGCCYEIYVKAVMREEARRK 94

[Close]

BLAST of CSPI01G01680.1 vs. NCBI nr
Match: gi|802652517|ref|XP_012080125.1| (PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas])

HSP 1 Score: 152.1 bits (383), Expect = 5.1e-34
Identity = 78/95 (82.11%), Postives = 84/95 (88.42%), Query Frame = 1


Query: 1  MAFFLNKSTLASHFRSQSQV--DPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAV 60
          MAF LN ST++SHFRSQSQ   D  SLSRRGFHVEPG REKALLAEDP L+RF+SHKK+V
Sbjct: 1  MAFLLNNSTISSHFRSQSQKTQDSLSLSRRGFHVEPGVREKALLAEDPVLKRFKSHKKSV 60

Query: 61 SRLKRVGDVLTIVVVAGCCYEIYVKATMREEARRQ 94
           RLKRVGDVLTIVVVAGCCYEIYVKA MREEARR+
Sbjct: 61 WRLKRVGDVLTIVVVAGCCYEIYVKAVMREEARRK 95

The following BLAST results are available for this feature:

BLAST of CSPI01G01680.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SDH7B_ARATH	1.5e-30	65.66	Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana GN=SDH...	[more]
SDH7A_ARATH	8.6e-26	68.82	Succinate dehydrogenase subunit 7A, mitochondrial OS=Arabidopsis thaliana GN=SDH...	[more]
SDH7_ORYSJ	1.2e-11	48.15	Succinate dehydrogenase subunit 7, mitochondrial OS=Oryza sativa subsp. japonica...	[more]

BLAST of CSPI01G01680.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUC0_CUCSA	1.1e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G005670 PE=4 SV=1	[more]
D7SHW9_VITVI	5.6e-32	78.13	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g07810 PE=4 SV=...	[more]
A0A061FTE5_THECC	8.1e-31	70.59	Uncharacterized protein OS=Theobroma cacao GN=TCM_011992 PE=4 SV=1	[more]
A9P9R2_POPTR	1.8e-30	76.92	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
A9PJS2_9ROSI	1.8e-30	76.92	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]

BLAST of CSPI01G01680.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62575.2	8.6e-32	65.66	unknown protein	[more]
AT3G47833.1	4.9e-27	68.82	unknown protein	[more]

BLAST of CSPI01G01680.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440710\|ref\|XP_004138127.1\|	1.2e-48	100.00	PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial [Cucumis sativus]	[more]
gi\|700208510\|gb\|KGN63606.1\|	1.5e-46	100.00	hypothetical protein Csa_1G005670 [Cucumis sativus]	[more]
gi\|659105547\|ref\|XP_008453123.1\|	1.3e-42	93.14	PREDICTED: uncharacterized protein LOC103493932 [Cucumis melo]	[more]
gi\|802652520\|ref\|XP_012080126.1\|	2.3e-34	82.98	PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Ja...	[more]
gi\|802652517\|ref\|XP_012080125.1\|	5.1e-34	82.11	PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Ja...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008483	transaminase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G01680	CSPI01G01680	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G01680.1	CSPI01G01680.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G01680.mrna.cds.4	CSPI01G01680.mrna.cds.4	CDS
CSPI01G01680.mrna.cds.3	CSPI01G01680.mrna.cds.3	CDS
CSPI01G01680.mrna.cds.2	CSPI01G01680.mrna.cds.2	CDS
CSPI01G01680.mrna.cds.1	CSPI01G01680.mrna.cds.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36041	FAMILY NOT NAMED	coord: 2..98 score: 7.6
None	No IPR available	PANTHER	PTHR36041:SF1	SUBFAMILY NOT NAMED	coord: 2..98 score: 7.6