BhiUN285M37 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	BhiUN285M37
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	RNA polymerase II C-terminal domain phosphatase-like 2
Location	Contig285 : 784837 .. 785061 (+)
Sequence length	225

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCGTTTAGGGTTCAAATCGGTGGTGTTTCACGGCGACGTTCGTCTTGGGAAACTTGATGCTATTCCGGCCATGGAGCAGAATTTTCAGTTTCCCAACAACGAGATTAGAATCCACCGTATATCGCCACCTAGTGAGAGATGTCCTCTTCTTTTAGTTCTTCAGACAATTTCTTCATTTTCTCTTTGGTGTAAGATACAATCTTCCTTGCCTGTTGAATAG

mRNA sequence

ATGGGCCGTTTAGGGTTCAAATCGGTGGTGTTTCACGGCGACGTTCGTCTTGGGAAACTTGATGCTATTCCGGCCATGGAGCAGAATTTTCAGTTTCCCAACAACGAGATTAGAATCCACCGTATATCGCCACCTAGTGAGAGATGTCCTCTTCTTTTAGTTCTTCAGACAATTTCTTCATTTTCTCTTTGGTGTAAGATACAATCTTCCTTGCCTGTTGAATAG

Coding sequence (CDS)

ATGGGCCGTTTAGGGTTCAAATCGGTGGTGTTTCACGGCGACGTTCGTCTTGGGAAACTTGATGCTATTCCGGCCATGGAGCAGAATTTTCAGTTTCCCAACAACGAGATTAGAATCCACCGTATATCGCCACCTAGTGAGAGATGTCCTCTTCTTTTAGTTCTTCAGACAATTTCTTCATTTTCTCTTTGGTGTAAGATACAATCTTCCTTGCCTGTTGAATAG

Protein sequence

MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISSFSLWCKIQSSLPVE

Homology

[Close]

BLAST of BhiUN285M37 vs. TAIR10
Match: AT5G01270.2 (carboxyl-terminal domain (ctd) phosphatase-like 2)

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-20
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1  MGRLGFKSVVFHGDVRLGKLDA-IPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTIS 60
          M RLG KSVV+HGD+RLG+LD    +    F+FPN+EIRIH +SP  ERCP L +LQTI+
Sbjct: 1  MNRLGHKSVVYHGDLRLGELDVNHVSSSHEFRFPNDEIRIHHLSPAGERCPPLAILQTIA 60

Query: 61 SFSLWCKIQSSLPVE 75
          SF++ CK++SS PV+
Sbjct: 61 SFAVRCKLESSAPVK 75

[Close]

BLAST of BhiUN285M37 vs. TAIR10
Match: AT4G21670.1 (C-terminal domain phosphatase-like 1)

HSP 1 Score: 47.4 bits (111), Expect = 4.5e-06
Identity = 29/78 (37.18%), Postives = 37/78 (47.44%), Query Frame = 0


Query: 10 VFHGDVRLGKLDAIPAMEQN-----------------FQFPNNEIRIHRISPPSERCPLL 69
          VFHGD RLG+L+  P+ E N                  +     IRI   S   ERCP L
Sbjct: 9  VFHGDGRLGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGIRISHFSQSGERCPPL 68

Query: 70 LVLQTISSFSLWCKIQSS 71
           +L TISS  L  K+++S
Sbjct: 69 AILTTISSCGLCFKLEAS 86

[Close]

BLAST of BhiUN285M37 vs. Swiss-Prot
Match: sp|Q5YDB5|CPL2_ARATH (RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3)

HSP 1 Score: 94.4 bits (233), Expect = 5.8e-19
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1  MGRLGFKSVVFHGDVRLGKLDA-IPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTIS 60
          M RLG KSVV+HGD+RLG+LD    +    F+FPN+EIRIH +SP  ERCP L +LQTI+
Sbjct: 1  MNRLGHKSVVYHGDLRLGELDVNHVSSSHEFRFPNDEIRIHHLSPAGERCPPLAILQTIA 60

Query: 61 SFSLWCKIQSSLPVE 75
          SF++ CK++SS PV+
Sbjct: 61 SFAVRCKLESSAPVK 75

[Close]

BLAST of BhiUN285M37 vs. Swiss-Prot
Match: sp|Q5YDB6|CPL1_ARATH (RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 8.2e-05
Identity = 29/78 (37.18%), Postives = 37/78 (47.44%), Query Frame = 0


Query: 10 VFHGDVRLGKLDAIPAMEQN-----------------FQFPNNEIRIHRISPPSERCPLL 69
          VFHGD RLG+L+  P+ E N                  +     IRI   S   ERCP L
Sbjct: 9  VFHGDGRLGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGIRISHFSQSGERCPPL 68

Query: 70 LVLQTISSFSLWCKIQSS 71
           +L TISS  L  K+++S
Sbjct: 69 AILTTISSCGLCFKLEAS 86

[Close]

BLAST of BhiUN285M37 vs. TrEMBL
Match: tr|A0A1S3BL37|A0A1S3BL37_CUCME (RNA polymerase II C-terminal domain phosphatase-like 2 OS=Cucumis melo OX=3656 GN=LOC103491217 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVVFHGDVRLG+LDAIPA +QNFQFPNNEIRIHRISPPSERCP L VLQTISS
Sbjct: 1  MSRLGFKSVVFHGDVRLGELDAIPATDQNFQFPNNEIRIHRISPPSERCPPLSVLQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FSL CK+QSSLPVE
Sbjct: 61 FSLRCKLQSSLPVE 74

[Close]

BLAST of BhiUN285M37 vs. TrEMBL
Match: tr|A0A0A0L2L8|A0A0A0L2L8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308610 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVVFHGDVRLG+LDAIPA +QNFQFPNNEIRIHRISPPSERCP L VLQTISS
Sbjct: 1  MSRLGFKSVVFHGDVRLGELDAIPATDQNFQFPNNEIRIHRISPPSERCPPLSVLQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FSL CK+QSSLPVE
Sbjct: 61 FSLRCKLQSSLPVE 74

[Close]

BLAST of BhiUN285M37 vs. TrEMBL
Match: tr|A0A059A746|A0A059A746_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02986 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-23
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RL FKSVV+HGDVRLG+LDA+PA   +FQFPNNEIRIHRISP SERCP L +LQT+SS
Sbjct: 1  MSRLAFKSVVYHGDVRLGELDAVPANGHSFQFPNNEIRIHRISPISERCPPLSILQTVSS 60

Query: 61 FSLWCKIQSSLPVE 75
          FS+ CK++SS PVE
Sbjct: 61 FSVRCKLESSSPVE 74

[Close]

BLAST of BhiUN285M37 vs. TrEMBL
Match: tr|A0A2I4F2L2|A0A2I4F2L2_9ROSI (RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 OS=Juglans regia OX=51240 GN=LOC108994920 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-23
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVV+HGD+ LG+LDAIP  +QNFQFPN+EIRIH ISP SERCP L +LQTISS
Sbjct: 1  MSRLGFKSVVYHGDLCLGELDAIPVKDQNFQFPNHEIRIHHISPQSERCPPLSILQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FS+ CK++SS PVE
Sbjct: 61 FSVRCKLESSSPVE 74

[Close]

BLAST of BhiUN285M37 vs. TrEMBL
Match: tr|A0A2I4F2L8|A0A2I4F2L8_9ROSI (RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 OS=Juglans regia OX=51240 GN=LOC108994920 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-23
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVV+HGD+ LG+LDAIP  +QNFQFPN+EIRIH ISP SERCP L +LQTISS
Sbjct: 1  MSRLGFKSVVYHGDLCLGELDAIPVKDQNFQFPNHEIRIHHISPQSERCPPLSILQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FS+ CK++SS PVE
Sbjct: 61 FSVRCKLESSSPVE 74

[Close]

BLAST of BhiUN285M37 vs. NCBI nr
Match: XP_004147918.1 (PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 3.1e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVVFHGDVRLG+LDAIPA +QNFQFPNNEIRIHRISPPSERCP L VLQTISS
Sbjct: 1  MSRLGFKSVVFHGDVRLGELDAIPATDQNFQFPNNEIRIHRISPPSERCPPLSVLQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FSL CK+QSSLPVE
Sbjct: 61 FSLRCKLQSSLPVE 74

[Close]

BLAST of BhiUN285M37 vs. NCBI nr
Match: XP_008449298.1 (PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 3.1e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVVFHGDVRLG+LDAIPA +QNFQFPNNEIRIHRISPPSERCP L VLQTISS
Sbjct: 1  MSRLGFKSVVFHGDVRLGELDAIPATDQNFQFPNNEIRIHRISPPSERCPPLSVLQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FSL CK+QSSLPVE
Sbjct: 61 FSLRCKLQSSLPVE 74

[Close]

BLAST of BhiUN285M37 vs. NCBI nr
Match: KGN54371.1 (hypothetical protein Csa_4G308610 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 3.1e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVVFHGDVRLG+LDAIPA +QNFQFPNNEIRIHRISPPSERCP L VLQTISS
Sbjct: 1  MSRLGFKSVVFHGDVRLGELDAIPATDQNFQFPNNEIRIHRISPPSERCPPLSVLQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FSL CK+QSSLPVE
Sbjct: 61 FSLRCKLQSSLPVE 74

[Close]

BLAST of BhiUN285M37 vs. NCBI nr
Match: XP_011653684.1 (PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 3.1e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVVFHGDVRLG+LDAIPA +QNFQFPNNEIRIHRISPPSERCP L VLQTISS
Sbjct: 1  MSRLGFKSVVFHGDVRLGELDAIPATDQNFQFPNNEIRIHRISPPSERCPPLSVLQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FSL CK+QSSLPVE
Sbjct: 61 FSLRCKLQSSLPVE 74

[Close]

BLAST of BhiUN285M37 vs. NCBI nr
Match: XP_022931888.1 (RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 133.7 bits (335), Expect = 2.7e-28
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVV+HGDVRLG+LDAIPA +Q+FQFPNNEIRIHRISPPSERCP L VLQTISS
Sbjct: 1  MSRLGFKSVVYHGDVRLGELDAIPATDQDFQFPNNEIRIHRISPPSERCPPLSVLQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FSL CK+QSSLPVE
Sbjct: 61 FSLRCKLQSSLPVE 74

The following BLAST results are available for this feature:

BLAST of BhiUN285M37 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G01270.2	3.2e-20	58.67	carboxyl-terminal domain (ctd) phosphatase-like 2	[more]
AT4G21670.1	4.5e-06	37.18	C-terminal domain phosphatase-like 1	[more]

BLAST of BhiUN285M37 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5YDB5\|CPL2_ARATH	5.8e-19	58.67	RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana O...	[more]
sp\|Q5YDB6\|CPL1_ARATH	8.2e-05	37.18	RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana O...	[more]

BLAST of BhiUN285M37 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BL37\|A0A1S3BL37_CUCME	2.1e-29	89.19	RNA polymerase II C-terminal domain phosphatase-like 2 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A0A0L2L8\|A0A0A0L2L8_CUCSA	2.1e-29	89.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308610 PE=4 SV=1	[more]
tr\|A0A059A746\|A0A059A746_EUCGR	1.0e-23	74.32	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02986 PE=4 SV...	[more]
tr\|A0A2I4F2L2\|A0A2I4F2L2_9ROSI	1.0e-23	74.32	RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 OS=Juglans reg...	[more]
tr\|A0A2I4F2L8\|A0A2I4F2L8_9ROSI	1.0e-23	74.32	RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 OS=Juglans reg...	[more]

BLAST of BhiUN285M37 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147918.1	3.1e-29	89.19	PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Cu...	[more]
XP_008449298.1	3.1e-29	89.19	PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Cucumis melo]	[more]
KGN54371.1	3.1e-29	89.19	hypothetical protein Csa_4G308610 [Cucumis sativus]	[more]
XP_011653684.1	3.1e-29	89.19	PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Cu...	[more]
XP_022931888.1	2.7e-28	86.49	RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Cucurbita mos...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008420	CTD phosphatase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain

Vocabulary: **INTERPRO**
Term	Definition
IPR039189	Fcp1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0048589	developmental growth
biological_process	GO:0009733	response to auxin
biological_process	GO:0006970	response to osmotic stress
molecular_function	GO:0008420	CTD phosphatase activity
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
BhiUN285G37	BhiUN285G37	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
BhiUN285M37.exon1	BhiUN285M37.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.BhiUN285M37	cds.BhiUN285M37	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
BhiUN285M37	BhiUN285M37-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039189	CTD phosphatase Fcp1	PANTHER	PTHR23081	RNA POLYMERASE II CTD PHOSPHATASE	coord: 1..73
None	No IPR available	PANTHER	PTHR23081:SF10	RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 2	coord: 1..73