BhiUN285G37 (gene) Wax gourd

Overview
NameBhiUN285G37
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRNA polymerase II C-terminal domain phosphatase-like 2
LocationContig285 : 784837 .. 785061 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCGTTTAGGGTTCAAATCGGTGGTGTTTCACGGCGACGTTCGTCTTGGGAAACTTGATGCTATTCCGGCCATGGAGCAGAATTTTCAGTTTCCCAACAACGAGATTAGAATCCACCGTATATCGCCACCTAGTGAGAGATGTCCTCTTCTTTTAGTTCTTCAGACAATTTCTTCATTTTCTCTTTGGTGTAAGATACAATCTTCCTTGCCTGTTGAATAG

mRNA sequence

ATGGGCCGTTTAGGGTTCAAATCGGTGGTGTTTCACGGCGACGTTCGTCTTGGGAAACTTGATGCTATTCCGGCCATGGAGCAGAATTTTCAGTTTCCCAACAACGAGATTAGAATCCACCGTATATCGCCACCTAGTGAGAGATGTCCTCTTCTTTTAGTTCTTCAGACAATTTCTTCATTTTCTCTTTGGTGTAAGATACAATCTTCCTTGCCTGTTGAATAG

Coding sequence (CDS)

ATGGGCCGTTTAGGGTTCAAATCGGTGGTGTTTCACGGCGACGTTCGTCTTGGGAAACTTGATGCTATTCCGGCCATGGAGCAGAATTTTCAGTTTCCCAACAACGAGATTAGAATCCACCGTATATCGCCACCTAGTGAGAGATGTCCTCTTCTTTTAGTTCTTCAGACAATTTCTTCATTTTCTCTTTGGTGTAAGATACAATCTTCCTTGCCTGTTGAATAG

Protein sequence

MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISSFSLWCKIQSSLPVE
Homology
[Close]
BLAST of BhiUN285G37 vs. TAIR10
Match: AT5G01270.2 (carboxyl-terminal domain (ctd) phosphatase-like 2)

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-20
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 0 

Query: 1  MGRLGFKSVVFHGDVRLGKLDA-IPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTIS 60
          M RLG KSVV+HGD+RLG+LD    +    F+FPN+EIRIH +SP  ERCP L +LQTI+
Sbjct: 1  MNRLGHKSVVYHGDLRLGELDVNHVSSSHEFRFPNDEIRIHHLSPAGERCPPLAILQTIA 60

Query: 61 SFSLWCKIQSSLPVE 75
          SF++ CK++SS PV+
Sbjct: 61 SFAVRCKLESSAPVK 75

[Close]
BLAST of BhiUN285G37 vs. TAIR10
Match: AT4G21670.1 (C-terminal domain phosphatase-like 1)

HSP 1 Score: 47.4 bits (111), Expect = 4.5e-06
Identity = 29/78 (37.18%), Postives = 37/78 (47.44%), Query Frame = 0 

Query: 10 VFHGDVRLGKLDAIPAMEQN-----------------FQFPNNEIRIHRISPPSERCPLL 69
          VFHGD RLG+L+  P+ E N                  +     IRI   S   ERCP L
Sbjct: 9  VFHGDGRLGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGIRISHFSQSGERCPPL 68

Query: 70 LVLQTISSFSLWCKIQSS 71
           +L TISS  L  K+++S
Sbjct: 69 AILTTISSCGLCFKLEAS 86

[Close]
BLAST of BhiUN285G37 vs. Swiss-Prot
Match: sp|Q5YDB5|CPL2_ARATH (RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3)

HSP 1 Score: 94.4 bits (233), Expect = 5.8e-19
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 0 

Query: 1  MGRLGFKSVVFHGDVRLGKLDA-IPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTIS 60
          M RLG KSVV+HGD+RLG+LD    +    F+FPN+EIRIH +SP  ERCP L +LQTI+
Sbjct: 1  MNRLGHKSVVYHGDLRLGELDVNHVSSSHEFRFPNDEIRIHHLSPAGERCPPLAILQTIA 60

Query: 61 SFSLWCKIQSSLPVE 75
          SF++ CK++SS PV+
Sbjct: 61 SFAVRCKLESSAPVK 75

[Close]
BLAST of BhiUN285G37 vs. Swiss-Prot
Match: sp|Q5YDB6|CPL1_ARATH (RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 8.2e-05
Identity = 29/78 (37.18%), Postives = 37/78 (47.44%), Query Frame = 0 

Query: 10 VFHGDVRLGKLDAIPAMEQN-----------------FQFPNNEIRIHRISPPSERCPLL 69
          VFHGD RLG+L+  P+ E N                  +     IRI   S   ERCP L
Sbjct: 9  VFHGDGRLGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGIRISHFSQSGERCPPL 68

Query: 70 LVLQTISSFSLWCKIQSS 71
           +L TISS  L  K+++S
Sbjct: 69 AILTTISSCGLCFKLEAS 86

[Close]
BLAST of BhiUN285G37 vs. TrEMBL
Match: tr|A0A1S3BL37|A0A1S3BL37_CUCME (RNA polymerase II C-terminal domain phosphatase-like 2 OS=Cucumis melo OX=3656 GN=LOC103491217 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0 

Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVVFHGDVRLG+LDAIPA +QNFQFPNNEIRIHRISPPSERCP L VLQTISS
Sbjct: 1  MSRLGFKSVVFHGDVRLGELDAIPATDQNFQFPNNEIRIHRISPPSERCPPLSVLQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FSL CK+QSSLPVE
Sbjct: 61 FSLRCKLQSSLPVE 74

[Close]
BLAST of BhiUN285G37 vs. TrEMBL
Match: tr|A0A0A0L2L8|A0A0A0L2L8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308610 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0 

Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVVFHGDVRLG+LDAIPA +QNFQFPNNEIRIHRISPPSERCP L VLQTISS
Sbjct: 1  MSRLGFKSVVFHGDVRLGELDAIPATDQNFQFPNNEIRIHRISPPSERCPPLSVLQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FSL CK+QSSLPVE
Sbjct: 61 FSLRCKLQSSLPVE 74

[Close]
BLAST of BhiUN285G37 vs. TrEMBL
Match: tr|A0A059A746|A0A059A746_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02986 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-23
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RL FKSVV+HGDVRLG+LDA+PA   +FQFPNNEIRIHRISP SERCP L +LQT+SS
Sbjct: 1  MSRLAFKSVVYHGDVRLGELDAVPANGHSFQFPNNEIRIHRISPISERCPPLSILQTVSS 60

Query: 61 FSLWCKIQSSLPVE 75
          FS+ CK++SS PVE
Sbjct: 61 FSVRCKLESSSPVE 74

[Close]
BLAST of BhiUN285G37 vs. TrEMBL
Match: tr|A0A2I4F2L2|A0A2I4F2L2_9ROSI (RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 OS=Juglans regia OX=51240 GN=LOC108994920 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-23
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVV+HGD+ LG+LDAIP  +QNFQFPN+EIRIH ISP SERCP L +LQTISS
Sbjct: 1  MSRLGFKSVVYHGDLCLGELDAIPVKDQNFQFPNHEIRIHHISPQSERCPPLSILQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FS+ CK++SS PVE
Sbjct: 61 FSVRCKLESSSPVE 74

[Close]
BLAST of BhiUN285G37 vs. TrEMBL
Match: tr|A0A2I4F2L8|A0A2I4F2L8_9ROSI (RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 OS=Juglans regia OX=51240 GN=LOC108994920 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-23
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVV+HGD+ LG+LDAIP  +QNFQFPN+EIRIH ISP SERCP L +LQTISS
Sbjct: 1  MSRLGFKSVVYHGDLCLGELDAIPVKDQNFQFPNHEIRIHHISPQSERCPPLSILQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FS+ CK++SS PVE
Sbjct: 61 FSVRCKLESSSPVE 74

[Close]
BLAST of BhiUN285G37 vs. NCBI nr
Match: XP_004147918.1 (PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 3.1e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0 

Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVVFHGDVRLG+LDAIPA +QNFQFPNNEIRIHRISPPSERCP L VLQTISS
Sbjct: 1  MSRLGFKSVVFHGDVRLGELDAIPATDQNFQFPNNEIRIHRISPPSERCPPLSVLQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FSL CK+QSSLPVE
Sbjct: 61 FSLRCKLQSSLPVE 74

[Close]
BLAST of BhiUN285G37 vs. NCBI nr
Match: XP_008449298.1 (PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 3.1e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0 

Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVVFHGDVRLG+LDAIPA +QNFQFPNNEIRIHRISPPSERCP L VLQTISS
Sbjct: 1  MSRLGFKSVVFHGDVRLGELDAIPATDQNFQFPNNEIRIHRISPPSERCPPLSVLQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FSL CK+QSSLPVE
Sbjct: 61 FSLRCKLQSSLPVE 74

[Close]
BLAST of BhiUN285G37 vs. NCBI nr
Match: KGN54371.1 (hypothetical protein Csa_4G308610 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 3.1e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0 

Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVVFHGDVRLG+LDAIPA +QNFQFPNNEIRIHRISPPSERCP L VLQTISS
Sbjct: 1  MSRLGFKSVVFHGDVRLGELDAIPATDQNFQFPNNEIRIHRISPPSERCPPLSVLQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FSL CK+QSSLPVE
Sbjct: 61 FSLRCKLQSSLPVE 74

[Close]
BLAST of BhiUN285G37 vs. NCBI nr
Match: XP_011653684.1 (PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 3.1e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0 

Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVVFHGDVRLG+LDAIPA +QNFQFPNNEIRIHRISPPSERCP L VLQTISS
Sbjct: 1  MSRLGFKSVVFHGDVRLGELDAIPATDQNFQFPNNEIRIHRISPPSERCPPLSVLQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FSL CK+QSSLPVE
Sbjct: 61 FSLRCKLQSSLPVE 74

[Close]
BLAST of BhiUN285G37 vs. NCBI nr
Match: XP_022931888.1 (RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 133.7 bits (335), Expect = 2.7e-28
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 0 

Query: 1  MGRLGFKSVVFHGDVRLGKLDAIPAMEQNFQFPNNEIRIHRISPPSERCPLLLVLQTISS 60
          M RLGFKSVV+HGDVRLG+LDAIPA +Q+FQFPNNEIRIHRISPPSERCP L VLQTISS
Sbjct: 1  MSRLGFKSVVYHGDVRLGELDAIPATDQDFQFPNNEIRIHRISPPSERCPPLSVLQTISS 60

Query: 61 FSLWCKIQSSLPVE 75
          FSL CK+QSSLPVE
Sbjct: 61 FSLRCKLQSSLPVE 74

The following BLAST results are available for this feature:
BLAST of BhiUN285G37 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G01270.23.2e-2058.67carboxyl-terminal domain (ctd) phosphatase-like 2[more]
AT4G21670.14.5e-0637.18C-terminal domain phosphatase-like 1[more]
BLAST of BhiUN285G37 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q5YDB5|CPL2_ARATH5.8e-1958.67RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana O... [more]
sp|Q5YDB6|CPL1_ARATH8.2e-0537.18RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana O... [more]
BLAST of BhiUN285G37 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BL37|A0A1S3BL37_CUCME2.1e-2989.19RNA polymerase II C-terminal domain phosphatase-like 2 OS=Cucumis melo OX=3656 G... [more]
tr|A0A0A0L2L8|A0A0A0L2L8_CUCSA2.1e-2989.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308610 PE=4 SV=1[more]
tr|A0A059A746|A0A059A746_EUCGR1.0e-2374.32Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02986 PE=4 SV... [more]
tr|A0A2I4F2L2|A0A2I4F2L2_9ROSI1.0e-2374.32RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 OS=Juglans reg... [more]
tr|A0A2I4F2L8|A0A2I4F2L8_9ROSI1.0e-2374.32RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 OS=Juglans reg... [more]
BLAST of BhiUN285G37 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147918.13.1e-2989.19PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Cu... [more]
XP_008449298.13.1e-2989.19PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Cucumis melo][more]
KGN54371.13.1e-2989.19hypothetical protein Csa_4G308610 [Cucumis sativus][more]
XP_011653684.13.1e-2989.19PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Cu... [more]
XP_022931888.12.7e-2886.49RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Cucurbita mos... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008420CTD phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0070940dephosphorylation of RNA polymerase II C-terminal domain
Vocabulary: INTERPRO
TermDefinition
IPR039189Fcp1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain
biological_process GO:0048589 developmental growth
biological_process GO:0009733 response to auxin
biological_process GO:0006970 response to osmotic stress
molecular_function GO:0008420 CTD phosphatase activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
BhiUN285M37BhiUN285M37mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039189CTD phosphatase Fcp1PANTHERPTHR23081RNA POLYMERASE II CTD PHOSPHATASEcoord: 1..73
NoneNo IPR availablePANTHERPTHR23081:SF10RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 2coord: 1..73

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
BhiUN285G37Wax gourdwgowgoB021
BhiUN285G37Cucumber (Gy14) v1cgywgoB606
BhiUN285G37Cucumber (Gy14) v1cgywgoB650
BhiUN285G37Cucumber (Gy14) v2cgybwgoB256
BhiUN285G37Cucumber (Gy14) v2cgybwgoB455
BhiUN285G37Cucurbita maxima (Rimu)cmawgoB0386
BhiUN285G37Cucurbita maxima (Rimu)cmawgoB0431
BhiUN285G37Cucurbita maxima (Rimu)cmawgoB1005
BhiUN285G37Cucurbita moschata (Rifu)cmowgoB0381
BhiUN285G37Cucurbita moschata (Rifu)cmowgoB0427
BhiUN285G37Cucurbita moschata (Rifu)cmowgoB1004
BhiUN285G37Cucurbita pepo (Zucchini)cpewgoB0242
BhiUN285G37Cucurbita pepo (Zucchini)cpewgoB0288
BhiUN285G37Cucurbita pepo (Zucchini)cpewgoB1104
BhiUN285G37Wild cucumber (PI 183967)cpiwgoB268
BhiUN285G37Wild cucumber (PI 183967)cpiwgoB481
BhiUN285G37Cucumber (Chinese Long) v3cucwgoB271
BhiUN285G37Cucumber (Chinese Long) v3cucwgoB490
BhiUN285G37Cucumber (Chinese Long) v2cuwgoB268
BhiUN285G37Cucumber (Chinese Long) v2cuwgoB478
BhiUN285G37Bottle gourd (USVL1VR-Ls)lsiwgoB040
BhiUN285G37Bottle gourd (USVL1VR-Ls)lsiwgoB543
BhiUN285G37Melon (DHL92) v3.6.1medwgoB034
BhiUN285G37Melon (DHL92) v3.6.1medwgoB529
BhiUN285G37Melon (DHL92) v3.5.1mewgoB036
BhiUN285G37Melon (DHL92) v3.5.1mewgoB528
BhiUN285G37Watermelon (Charleston Gray)wcgwgoB112
BhiUN285G37Watermelon (Charleston Gray)wcgwgoB206
BhiUN285G37Watermelon (97103) v2wgowmbB163
BhiUN285G37Watermelon (97103) v2wgowmbB164
BhiUN285G37Watermelon (97103) v1wgowmB163
BhiUN285G37Watermelon (97103) v1wgowmB165
BhiUN285G37Silver-seed gourdcarwgoB1006
BhiUN285G37Silver-seed gourdcarwgoB1012