Bhi12M001899 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12M001899
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Seed nucellus-specific protein
Location	chr12 : 66229373 .. 66229708 (+)
Sequence length	336

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATAGGTAAGAATCTCGTCGTCGTGCTCGTAGTCTCGACGTTGGCAATGGTGTTTCTGGAAAATGTTGAAGGAGGAAGAGAGATGGCCTTGAAAGAAGCAGCAAAAGCTGATTACAATCCCCACATTTTGAATGAAAATGTGGAATATAAACCCAAGGAGGAATATGACTGTGATGGATATAGATACACAGATAGAGATTGTTATGAATATGGCAAATGTGACAACTTCTCCTATCTCGACGACGACGACCGTCAATACAATTGGAATTCCTATAAAAAATCGGTGGCAGAGGTGGTCGGAAAGTATGGAGTTCAGAAGAATTTCCCCTGA

mRNA sequence

ATGACGATAGGTAAGAATCTCGTCGTCGTGCTCGTAGTCTCGACGTTGGCAATGGTGTTTCTGGAAAATGTTGAAGGAGGAAGAGAGATGGCCTTGAAAGAAGCAGCAAAAGCTGATTACAATCCCCACATTTTGAATGAAAATGTGGAATATAAACCCAAGGAGGAATATGACTGTGATGGATATAGATACACAGATAGAGATTGTTATGAATATGGCAAATGTGACAACTTCTCCTATCTCGACGACGACGACCGTCAATACAATTGGAATTCCTATAAAAAATCGGTGGCAGAGGTGGTCGGAAAGTATGGAGTTCAGAAGAATTTCCCCTGA

Coding sequence (CDS)

ATGACGATAGGTAAGAATCTCGTCGTCGTGCTCGTAGTCTCGACGTTGGCAATGGTGTTTCTGGAAAATGTTGAAGGAGGAAGAGAGATGGCCTTGAAAGAAGCAGCAAAAGCTGATTACAATCCCCACATTTTGAATGAAAATGTGGAATATAAACCCAAGGAGGAATATGACTGTGATGGATATAGATACACAGATAGAGATTGTTATGAATATGGCAAATGTGACAACTTCTCCTATCTCGACGACGACGACCGTCAATACAATTGGAATTCCTATAAAAAATCGGTGGCAGAGGTGGTCGGAAAGTATGGAGTTCAGAAGAATTTCCCCTGA

Protein sequence

MTIGKNLVVVLVVSTLAMVFLENVEGGREMALKEAAKADYNPHILNENVEYKPKEEYDCDGYRYTDRDCYEYGKCDNFSYLDDDDRQYNWNSYKKSVAEVVGKYGVQKNFP

Homology

[Close]

BLAST of Bhi12M001899 vs. TrEMBL
Match: tr|O22351|O22351_CITLA (Seed nucellus-specific protein OS=Citrullus lanatus OX=3654 GN=WM403 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.9e-24
Identity = 64/114 (56.14%), Postives = 79/114 (69.30%), Query Frame = 0


Query: 3   IGKNLVVVLVVSTLAMVFLENVEGGREMALKEAAKADYNPHILNENVE-YKPKEEYDCDG 62
           +GK LV +LV+S +AM  LENVEGGREM LKEA    Y PH+LNE  E YKPKE+Y+CDG
Sbjct: 4   VGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAY-PHVLNEKYEGYKPKEDYECDG 63

Query: 63  YRYTDRDCYEYGK-XXXXXXXDDDDRQYNWNSYKKSV---AEVVGKYGVQKNFP 112
           Y+Y D++CYEYG         ++DDRQYN + YKK +    E+  KYGV  NFP
Sbjct: 64  YKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 116

[Close]

BLAST of Bhi12M001899 vs. TrEMBL
Match: tr|A0A0A0L8T2|A0A0A0L8T2_CUCSA (Seed nucellus-specific protein OS=Cucumis sativus OX=3659 GN=Csa_3G630260 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-17
Identity = 59/133 (44.36%), Postives = 74/133 (55.64%), Query Frame = 0


Query: 1   MTIGKNLVVVLVVSTLAMVFLENVEGGREMALKEAAKADYNPHILNENVE-YKP------ 60
           MTI K LV +L+VS +AM FLENVEGGREMALK+     Y+   L+EN E YKP      
Sbjct: 1   MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQE-LDENYEGYKPXXXXXX 60

Query: 61  ------------KEEYDCDGYRYTDRDCYEYGKXXXXXXXDDDDRQYNWNSYKKSVA--- 112
                            CDGY+Y+D+DCYEYG        +D D QYNW   KK +A   
Sbjct: 61  XXXXXXXXXXXXXXXXXCDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNKKPIAKPK 120

[Close]

BLAST of Bhi12M001899 vs. TrEMBL
Match: tr|A0A0A0KAR7|A0A0A0KAR7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109680 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.8e-16
Identity = 67/117 (57.26%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 1   MTIGKNLVVVLVVSTLAMVFLENVEGGREMALKEAAKADYNPHILNENVEYKPKE-EYDC 60
           MT GKNLV VL  STLAM+F+ENVEG R+M LKEA KA YN  +LNE +EY P E EYDC
Sbjct: 2   MTTGKNLVAVLAFSTLAMMFMENVEGERKMGLKEATKA-YNGQVLNEKMEYNPNEDEYDC 61

Query: 61  DGYRY--TDRDCYEYGKXXXXXXXDDDDRQYNWNSYKKSV---AEVVGKYGVQKNFP 112
           DGY+Y            XXXXXXX        WNSYK  V    EV  KY V KNFP
Sbjct: 62  DGYKYKXXXXXXXXXXXXXXXXXXXXXXXXXXWNSYKNPVPKPKEVDEKYKVHKNFP 117

[Close]

BLAST of Bhi12M001899 vs. NCBI nr
Match: AAB82329.1 (seed nucellus-specific protein [Citrullus lanatus])

HSP 1 Score: 119.8 bits (299), Expect = 5.9e-24
Identity = 64/114 (56.14%), Postives = 79/114 (69.30%), Query Frame = 0


Query: 3   IGKNLVVVLVVSTLAMVFLENVEGGREMALKEAAKADYNPHILNENVE-YKPKEEYDCDG 62
           +GK LV +LV+S +AM  LENVEGGREM LKEA    Y PH+LNE  E YKPKE+Y+CDG
Sbjct: 4   VGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAY-PHVLNEKYEGYKPKEDYECDG 63

Query: 63  YRYTDRDCYEYGK-XXXXXXXDDDDRQYNWNSYKKSV---AEVVGKYGVQKNFP 112
           Y+Y D++CYEYG         ++DDRQYN + YKK +    E+  KYGV  NFP
Sbjct: 64  YKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 116

[Close]

BLAST of Bhi12M001899 vs. NCBI nr
Match: KGN58370.1 (Seed nucellus-specific protein [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 4.1e-17
Identity = 59/133 (44.36%), Postives = 74/133 (55.64%), Query Frame = 0


Query: 1   MTIGKNLVVVLVVSTLAMVFLENVEGGREMALKEAAKADYNPHILNENVE-YKP------ 60
           MTI K LV +L+VS +AM FLENVEGGREMALK+     Y+   L+EN E YKP      
Sbjct: 1   MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQE-LDENYEGYKPXXXXXX 60

Query: 61  ------------KEEYDCDGYRYTDRDCYEYGKXXXXXXXDDDDRQYNWNSYKKSVA--- 112
                            CDGY+Y+D+DCYEYG        +D D QYNW   KK +A   
Sbjct: 61  XXXXXXXXXXXXXXXXXCDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNKKPIAKPK 120

[Close]

BLAST of Bhi12M001899 vs. NCBI nr
Match: KGN46573.1 (hypothetical protein Csa_6G109680 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 67/117 (57.26%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 1   MTIGKNLVVVLVVSTLAMVFLENVEGGREMALKEAAKADYNPHILNENVEYKPKE-EYDC 60
           MT GKNLV VL  STLAM+F+ENVEG R+M LKEA KA YN  +LNE +EY P E EYDC
Sbjct: 2   MTTGKNLVAVLAFSTLAMMFMENVEGERKMGLKEATKA-YNGQVLNEKMEYNPNEDEYDC 61

Query: 61  DGYRY--TDRDCYEYGKXXXXXXXDDDDRQYNWNSYKKSV---AEVVGKYGVQKNFP 112
           DGY+Y            XXXXXXX        WNSYK  V    EV  KY V KNFP
Sbjct: 62  DGYKYKXXXXXXXXXXXXXXXXXXXXXXXXXXWNSYKNPVPKPKEVDEKYKVHKNFP 117

The following BLAST results are available for this feature:

BLAST of Bhi12M001899 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi12M001899 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi12M001899 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|O22351\|O22351_CITLA	3.9e-24	56.14	Seed nucellus-specific protein OS=Citrullus lanatus OX=3654 GN=WM403 PE=4 SV=1	[more]
tr\|A0A0A0L8T2\|A0A0A0L8T2_CUCSA	2.7e-17	44.36	Seed nucellus-specific protein OS=Cucumis sativus OX=3659 GN=Csa_3G630260 PE=4 S...	[more]
tr\|A0A0A0KAR7\|A0A0A0KAR7_CUCSA	8.8e-16	57.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109680 PE=4 SV=1	[more]

BLAST of Bhi12M001899 vs. NCBI nr


Match Name	E-value	Identity	Description
AAB82329.1	5.9e-24	56.14	seed nucellus-specific protein [Citrullus lanatus]	[more]
KGN58370.1	4.1e-17	44.36	Seed nucellus-specific protein [Cucumis sativus]	[more]
KGN46573.1	1.3e-15	57.26	hypothetical protein Csa_6G109680 [Cucumis sativus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi12G001899	Bhi12G001899	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi12M001899.exon1	Bhi12M001899.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi12M001899	cds.Bhi12M001899	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi12M001899	Bhi12M001899-protein	polypeptide