Bhi12M001895 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12M001895
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr12 : 66148507 .. 66148685 (+)
Sequence length	179

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCCTCACCCAACTTCTCAAATATCATAGCAATAGGACAAAGGATCGAGTTTGGGATGAAGAATGGAAGAATTACCGATTTCGCTTCAGGATTAGGGAAAATGACGACTCCAAAGAAGAAGGAAACAGAGATGCACGAGTTGAGCTCGACCAGAAGAACAACACATACCCTGATCAATT

mRNA sequence

TGCCTCACCCAACTTCTCAAATATCATAGCAATAGGACAAAGGATCGAGTTTGGGATGAAGAATGGAAGAATTACCGATTTCGCTTCAGGATTAGGGAAAATGACGACTCCAAAGAAGAAGGAAACAGAGATGCACGAGTTGAGCTCGACCAGAAGAACAACACATACCCTGATCAATT

Coding sequence (CDS)

TGCCTCACCCAACTTCTCAAATATCATAGCAATAGGACAAAGGATCGAGTTTGGGATGAAGAATGGAAGAATTACCGATTTCGCTTCAGGATTAGGGAAAATGACGACTCCAAAGAAGAAGGAAACAGAGATGCACGAGTTGAGCTCGACCAGAAGAACAACACATACCCTGATCAATT

Protein sequence

ASPNFSNIIAIGQRIEFGMKNGRITDFASGLGKMTTPKKKETEMHELSSTRRTTHTLIN

Homology

[Close]

BLAST of Bhi12M001895 vs. TrEMBL
Match: tr|A0A1S4E534|A0A1S4E534_CUCME (uncharacterized protein LOC103502838 OS=Cucumis melo OX=3656 GN=LOC103502838 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1   ASPNFSNIIAIGQRIEFGMKNGRITDFASGLGKMTTPKKKETEMHELSSTRRTTH 56
           AS NFS++I IG+ IEFG+KNGRI D +S + +M TPKKKE E+HELSST++  H
Sbjct: 291 ASTNFSDVITIGEMIEFGVKNGRIFDPSSEIRRMMTPKKKEEEIHELSSTKKVVH 345

[Close]

BLAST of Bhi12M001895 vs. TrEMBL
Match: tr|A0A1S3BTL0|A0A1S3BTL0_CUCME (uncharacterized protein LOC103493407 OS=Cucumis melo OX=3656 GN=LOC103493407 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-09
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1   ASPNFSNIIAIGQRIEFGMKNGRITDFASGLGKMTTPKKKETEMHELSST 51
           AS NFS++I IG+RIEFG+KN RITDF+S   +M T KKKE E+HELSST
Sbjct: 298 ASTNFSDVIRIGERIEFGVKNERITDFSSETRRMMTLKKKEEEIHELSST 347

[Close]

BLAST of Bhi12M001895 vs. NCBI nr
Match: XP_016903339.1 (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-09
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1   ASPNFSNIIAIGQRIEFGMKNGRITDFASGLGKMTTPKKKETEMHELSSTRRTTH 56
           AS NFS++I IG+ IEFG+KNGRI D +S + +M TPKKKE E+HELSST++  H
Sbjct: 291 ASTNFSDVITIGEMIEFGVKNGRIFDPSSEIRRMMTPKKKEEEIHELSSTKKVVH 345

[Close]

BLAST of Bhi12M001895 vs. NCBI nr
Match: XP_008452348.1 (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1   ASPNFSNIIAIGQRIEFGMKNGRITDFASGLGKMTTPKKKETEMHELSST 51
           AS NFS++I IG+RIEFG+KN RITDF+S   +M T KKKE E+HELSST
Sbjct: 298 ASTNFSDVIRIGERIEFGVKNERITDFSSETRRMMTLKKKEEEIHELSST 347

The following BLAST results are available for this feature:

BLAST of Bhi12M001895 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi12M001895 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi12M001895 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E534\|A0A1S4E534_CUCME	1.1e-09	61.82	uncharacterized protein LOC103502838 OS=Cucumis melo OX=3656 GN=LOC103502838 PE=...	[more]
tr\|A0A1S3BTL0\|A0A1S3BTL0_CUCME	7.2e-09	68.00	uncharacterized protein LOC103493407 OS=Cucumis melo OX=3656 GN=LOC103493407 PE=...	[more]

BLAST of Bhi12M001895 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903339.1	1.7e-09	61.82	PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]	[more]
XP_008452348.1	1.1e-08	68.00	PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi12G001895	Bhi12G001895	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi12M001895.exon1	Bhi12M001895.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi12M001895	cds.Bhi12M001895	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi12M001895	Bhi12M001895-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..50