Bhi12G001895 (gene) Wax gourd

Overview
NameBhi12G001895
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr12 : 66148507 .. 66148685 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCTCACCCAACTTCTCAAATATCATAGCAATAGGACAAAGGATCGAGTTTGGGATGAAGAATGGAAGAATTACCGATTTCGCTTCAGGATTAGGGAAAATGACGACTCCAAAGAAGAAGGAAACAGAGATGCACGAGTTGAGCTCGACCAGAAGAACAACACATACCCTGATCAATT

mRNA sequence

TGCCTCACCCAACTTCTCAAATATCATAGCAATAGGACAAAGGATCGAGTTTGGGATGAAGAATGGAAGAATTACCGATTTCGCTTCAGGATTAGGGAAAATGACGACTCCAAAGAAGAAGGAAACAGAGATGCACGAGTTGAGCTCGACCAGAAGAACAACACATACCCTGATCAATT

Coding sequence (CDS)

TGCCTCACCCAACTTCTCAAATATCATAGCAATAGGACAAAGGATCGAGTTTGGGATGAAGAATGGAAGAATTACCGATTTCGCTTCAGGATTAGGGAAAATGACGACTCCAAAGAAGAAGGAAACAGAGATGCACGAGTTGAGCTCGACCAGAAGAACAACACATACCCTGATCAATT

Protein sequence

ASPNFSNIIAIGQRIEFGMKNGRITDFASGLGKMTTPKKKETEMHELSSTRRTTHTLIN
Homology
[Close]
BLAST of Bhi12G001895 vs. TrEMBL
Match: tr|A0A1S4E534|A0A1S4E534_CUCME (uncharacterized protein LOC103502838 OS=Cucumis melo OX=3656 GN=LOC103502838 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 1   ASPNFSNIIAIGQRIEFGMKNGRITDFASGLGKMTTPKKKETEMHELSSTRRTTH 56
           AS NFS++I IG+ IEFG+KNGRI D +S + +M TPKKKE E+HELSST++  H
Sbjct: 291 ASTNFSDVITIGEMIEFGVKNGRIFDPSSEIRRMMTPKKKEEEIHELSSTKKVVH 345

[Close]
BLAST of Bhi12G001895 vs. TrEMBL
Match: tr|A0A1S3BTL0|A0A1S3BTL0_CUCME (uncharacterized protein LOC103493407 OS=Cucumis melo OX=3656 GN=LOC103493407 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-09
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 1   ASPNFSNIIAIGQRIEFGMKNGRITDFASGLGKMTTPKKKETEMHELSST 51
           AS NFS++I IG+RIEFG+KN RITDF+S   +M T KKKE E+HELSST
Sbjct: 298 ASTNFSDVIRIGERIEFGVKNERITDFSSETRRMMTLKKKEEEIHELSST 347

[Close]
BLAST of Bhi12G001895 vs. NCBI nr
Match: XP_016903339.1 (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-09
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 1   ASPNFSNIIAIGQRIEFGMKNGRITDFASGLGKMTTPKKKETEMHELSSTRRTTH 56
           AS NFS++I IG+ IEFG+KNGRI D +S + +M TPKKKE E+HELSST++  H
Sbjct: 291 ASTNFSDVITIGEMIEFGVKNGRIFDPSSEIRRMMTPKKKEEEIHELSSTKKVVH 345

[Close]
BLAST of Bhi12G001895 vs. NCBI nr
Match: XP_008452348.1 (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 1   ASPNFSNIIAIGQRIEFGMKNGRITDFASGLGKMTTPKKKETEMHELSST 51
           AS NFS++I IG+RIEFG+KN RITDF+S   +M T KKKE E+HELSST
Sbjct: 298 ASTNFSDVIRIGERIEFGVKNERITDFSSETRRMMTLKKKEEEIHELSST 347

The following BLAST results are available for this feature:
BLAST of Bhi12G001895 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi12G001895 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi12G001895 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E534|A0A1S4E534_CUCME1.1e-0961.82uncharacterized protein LOC103502838 OS=Cucumis melo OX=3656 GN=LOC103502838 PE=... [more]
tr|A0A1S3BTL0|A0A1S3BTL0_CUCME7.2e-0968.00uncharacterized protein LOC103493407 OS=Cucumis melo OX=3656 GN=LOC103493407 PE=... [more]
BLAST of Bhi12G001895 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903339.11.7e-0961.82PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo][more]
XP_008452348.11.1e-0868.00PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M001895Bhi12M001895mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..50

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi12G001895Cucumber (Gy14) v1cgywgoB205
Bhi12G001895Cucumber (Gy14) v2cgybwgoB522
Bhi12G001895Cucurbita maxima (Rimu)cmawgoB0457
Bhi12G001895Cucurbita maxima (Rimu)cmawgoB1099
Bhi12G001895Cucurbita moschata (Rifu)cmowgoB0455
Bhi12G001895Cucurbita moschata (Rifu)cmowgoB1093
Bhi12G001895Cucurbita pepo (Zucchini)cpewgoB0174
Bhi12G001895Cucurbita pepo (Zucchini)cpewgoB0381
Bhi12G001895Wild cucumber (PI 183967)cpiwgoB549
Bhi12G001895Cucumber (Chinese Long) v3cucwgoB562
Bhi12G001895Cucumber (Chinese Long) v2cuwgoB545
Bhi12G001895Bottle gourd (USVL1VR-Ls)lsiwgoB011
Bhi12G001895Melon (DHL92) v3.6.1medwgoB094
Bhi12G001895Melon (DHL92) v3.5.1mewgoB093
Bhi12G001895Watermelon (Charleston Gray)wcgwgoB499
Bhi12G001895Watermelon (97103) v2wgowmbB094
Bhi12G001895Watermelon (97103) v1wgowmB093
Bhi12G001895Silver-seed gourdcarwgoB0667
Bhi12G001895Silver-seed gourdcarwgoB0713