Bhi12M001348 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12M001348
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	F-box protein
Location	chr12 : 49847175 .. 49847556 (+)
Sequence length	382

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTTCCAACTACGTTGTATTGGAGATTTTGAGTCGAGTTCCCCTACCTAAAGGTGGAAAAATACGAGTTCTCTCGAAATTTCATGCCAAAGCTAGCTATGGTTCTTACTATAAAGATTTAGTTGCACAACATCACCATGGACCCTTCTTAGATGGCTTCCTCCTTCAAAGACTTGGCCATGAAAATTGTTTATCCTTTATTTCTCTACAACCCAACTTTTTCCCCTTGGATTTGTCGTTTAGTTTCCTCCCGGGACGTGACGTTCAAATTCGAGCCGTTGCTCCCAATGGTCTTCTTTTATGTGAAATCCGACACCCAATCCGTTACAGACAGTGTTTTTACACCATTTGCAAACTTTCTACACAACAATGGAAAG

mRNA sequence

ATGGATATTTCCAACTACGTTGTATTGGAGATTTTGAGTCGAGTTCCCCTACCTAAAGGTGGAAAAATACGAGTTCTCTCGAAATTTCATGCCAAAGCTAGCTATGGTTCTTACTATAAAGATTTAGTTGCACAACATCACCATGGACCCTTCTTAGATGGCTTCCTCCTTCAAAGACTTGGCCATGAAAATTGTTTATCCTTTATTTCTCTACAACCCAACTTTTTCCCCTTGGATTTGTCGTTTAGTTTCCTCCCGGGACGTGACGTTCAAATTCGAGCCGTTGCTCCCAATGGTCTTCTTTTATGTGAAATCCGACACCCAATCCGTTACAGACAGTGTTTTTACACCATTTGCAAACTTTCTACACAACAATGGAAAG

Coding sequence (CDS)

ATGGATATTTCCAACTACGTTGTATTGGAGATTTTGAGTCGAGTTCCCCTACCTAAAGGTGGAAAAATACGAGTTCTCTCGAAATTTCATGCCAAAGCTAGCTATGGTTCTTACTATAAAGATTTAGTTGCACAACATCACCATGGACCCTTCTTAGATGGCTTCCTCCTTCAAAGACTTGGCCATGAAAATTGTTTATCCTTTATTTCTCTACAACCCAACTTTTTCCCCTTGGATTTGTCGTTTAGTTTCCTCCCGGGACGTGACGTTCAAATTCGAGCCGTTGCTCCCAATGGTCTTCTTTTATGTGAAATCCGACACCCAATCCGTTACAGACAGTGTTTTTACACCATTTGCAAACTTTCTACACAACAATGGAAAG

Protein sequence

MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQRLGHENCLSFISLQPNFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRYRQCFYTICKLSTQQWK

Homology

[Close]

BLAST of Bhi12M001348 vs. TAIR10
Match: AT2G05360.1 (BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT1G64295.1))

HSP 1 Score: 47.8 bits (112), Expect = 6.0e-06
Identity = 36/123 (29.27%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 7   VVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQ--RLGHEN 66
           ++ E+LS +P  K GK R+L+K   K SY S++ +L    +   ++ G+ L+  + G+  
Sbjct: 10  MIQEVLSYLPASKNGKFRLLNKECNKRSYESWFLNL--NFYRTNYISGYFLESYKGGYTI 69

Query: 67  CLSFISLQPNFFPLDLSFSFLPGRDVQIRAV-APNGLLLCEIRHPIRYRQCFYTICKLST 126
             SF+  + +     +S  FLP  + +I+A  A +G+LLC     +      Y +CK +T
Sbjct: 70  DTSFVHERRDLENKGVSIDFLPQGERKIKACDASHGILLCVNDTGLIPE---YIVCKPTT 127

[Close]

BLAST of Bhi12M001348 vs. TrEMBL
Match: tr|A0A1S3B7Y4|A0A1S3B7Y4_CUCME (F-box protein At5g49610-like OS=Cucumis melo OX=3656 GN=LOC103487156 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.1e-28
Identity = 73/133 (54.89%), Postives = 93/133 (69.92%), Query Frame = 0


Query: 1   MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQ-- 60
           MD+ + V+LEIL R  L + GKI+ LSKF+ K SY   YK L++++H  P LDGFLLQ  
Sbjct: 1   MDLPDDVILEILIRFSLNQAGKIQTLSKFYNKTSYSFCYKTLISENHSQPILDGFLLQSP 60

Query: 61  -RLGHENCLSFISLQP--NFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRY-RQC 120
               + + LSF+S  P  N  PL+LS +FLPG + QIRAVAPNGLLLCE +H IR+ ++ 
Sbjct: 61  KSKSNAHLLSFVSPHPNNNSPPLNLSLNFLPGLNPQIRAVAPNGLLLCETQHSIRHNKRL 120

Query: 121 FYTICKLSTQQWK 128
            YTI KLSTQQWK
Sbjct: 121 IYTITKLSTQQWK 133

[Close]

BLAST of Bhi12M001348 vs. TrEMBL
Match: tr|A0A0A0LBP1|A0A0A0LBP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G785420 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-24
Identity = 71/133 (53.38%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 1   MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQR- 60
           MD    VVLEILSR  L + GKI+ LSKF+  +SY SYYK L+A++  G   DGFLLQ  
Sbjct: 1   MDFPEDVVLEILSRFYLNQAGKIQGLSKFYNNSSYNSYYKTLIAKNQPG-IADGFLLQSP 60

Query: 61  --LGHENCLSFISLQPN--FFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRY-RQC 120
               ++  +SF+S   +    PL+LS SFLPG + +IRAVAPNGLLLCE +H IR+ ++ 
Sbjct: 61  VPKSNDYIVSFVSPHKDSPVVPLNLSLSFLPGLNPKIRAVAPNGLLLCESQHSIRHNKRS 120

Query: 121 FYTICKLSTQQWK 128
            YTI KL TQQWK
Sbjct: 121 IYTITKLCTQQWK 132

[Close]

BLAST of Bhi12M001348 vs. TrEMBL
Match: tr|U7E0Y1|U7E0Y1_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_0143s00210g PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.1e-05
Identity = 38/127 (29.92%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 2   DISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQ-RL 61
           D+   V+ E+L+   +    K R+LSK H K +Y S +  L  Q  +   + GFL+Q  +
Sbjct: 6   DLCRDVIYEVLTPSSMKTVEKYRLLSKEHNKLTYKSLFIKLHNQRTN--IVSGFLIQSMI 65

Query: 62  GHENCLSFISLQPNFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRYRQCFYTICK 121
            +E  + F+S   +     + F FLP + ++I +    G+LLC +     Y +  Y +C 
Sbjct: 66  RNEYKVFFVSTDASNTQTQMPFDFLP-KHMEIVSSTNQGVLLCRV-----YNESCYYVCN 124

Query: 122 LSTQQWK 128
           L+ QQW+
Sbjct: 126 LAIQQWQ 124

[Close]

BLAST of Bhi12M001348 vs. TrEMBL
Match: tr|A0A061GMD8|A0A061GMD8_THECC (F-box associated ubiquitination effector family protein, putative OS=Theobroma cacao OX=3641 GN=TCM_037569 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-04
Identity = 44/128 (34.38%), Postives = 64/128 (50.00%), Query Frame = 0


Query: 2   DISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQRLG 61
           D+S+ V+ EILSR+PL    + R+LS+     +Y S +  L  Q  +   + G+ +Q   
Sbjct: 5   DLSSDVMFEILSRMPLKMLRRCRLLSRECNSLTYESSFMRLHCQRTN--TIAGYFIQTSK 64

Query: 62  HENCLS-FISL-QPNFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRYRQCFYTIC 121
                S F S+  P      L+  FLP   V IRA A  GL+LCE +      Q  Y +C
Sbjct: 65  KSRGYSTFCSIDNPGVASDQLTLDFLP-ETVHIRATADQGLMLCESQR----SQNRYYVC 124

Query: 122 KLSTQQWK 128
           K  T+QW+
Sbjct: 125 KPGTRQWE 125

[Close]

BLAST of Bhi12M001348 vs. TrEMBL
Match: tr|W9RY39|W9RY39_9ROSA (F-box protein OS=Morus notabilis OX=981085 GN=L484_014172 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.0e-04
Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 0


Query: 2   DISNYVVL-EILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQRL 61
           DI   V+L EIL+R      G+ R + K   + +Y S +  L  Q      + GF +Q L
Sbjct: 6   DIPFDVILNEILTRTSPETVGRCRAVCKRLKEDTYHSSFTKLFLQRTR--TVSGFFIQTL 65

Query: 62  -GHENCLSFISLQPNFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRYRQCFYTIC 121
             ++   +FIS+        LS SFLP R ++I+A    GLLLC+I    +     Y +C
Sbjct: 66  RSNKRSCTFISMDTK---SKLSLSFLP-RHMKIKASTKQGLLLCKIEKFAKSMIPQYIVC 125

Query: 122 KLSTQQW 127
           K +TQQW
Sbjct: 126 KPTTQQW 126

[Close]

BLAST of Bhi12M001348 vs. NCBI nr
Match: XP_008443600.1 (PREDICTED: F-box protein At5g49610-like [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 7.8e-28
Identity = 73/133 (54.89%), Postives = 93/133 (69.92%), Query Frame = 0


Query: 1   MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQ-- 60
           MD+ + V+LEIL R  L + GKI+ LSKF+ K SY   YK L++++H  P LDGFLLQ  
Sbjct: 1   MDLPDDVILEILIRFSLNQAGKIQTLSKFYNKTSYSFCYKTLISENHSQPILDGFLLQSP 60

Query: 61  -RLGHENCLSFISLQP--NFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRY-RQC 120
               + + LSF+S  P  N  PL+LS +FLPG + QIRAVAPNGLLLCE +H IR+ ++ 
Sbjct: 61  KSKSNAHLLSFVSPHPNNNSPPLNLSLNFLPGLNPQIRAVAPNGLLLCETQHSIRHNKRL 120

Query: 121 FYTICKLSTQQWK 128
            YTI KLSTQQWK
Sbjct: 121 IYTITKLSTQQWK 133

[Close]

BLAST of Bhi12M001348 vs. NCBI nr
Match: XP_022983376.1 (F-box protein At5g49610-like [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 2.3e-27
Identity = 70/132 (53.03%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 1   MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQRL 60
           M++ + V++EILSR+P    GKIR LSK H +A+Y SY+K L A H   P L GFLLQ L
Sbjct: 1   MELPDDVIIEILSRLPFHAVGKIRALSKSHNQATYTSYFKALAADHQ--PLLLGFLLQSL 60

Query: 61  -----GHENCLSFISLQPNFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRYRQCF 120
                G  + LSF + QPN  PL+LS SFLPG+  Q+ AVAPNGL+L + RH  RY++  
Sbjct: 61  RTTATGRRHVLSFATPQPNSPPLELSLSFLPGQSPQVLAVAPNGLVLFQTRHRTRYQRQL 120

Query: 121 YTICKLSTQQWK 128
           YTICKL T+QW+
Sbjct: 121 YTICKLPTKQWQ 130

[Close]

BLAST of Bhi12M001348 vs. NCBI nr
Match: XP_023528881.1 (F-box protein At5g49610-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.1 bits (318), Expect = 4.3e-26
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 1   MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQRL 60
           M++ + V+L+ILSR+P    GKIR LSK H +A+Y SY+K L A H   P L GFLLQ L
Sbjct: 1   MELPDDVILDILSRLPFHAVGKIRALSKSHNQATYTSYFKALAADHQ--PLLLGFLLQSL 60

Query: 61  -----GHENCLSFISLQPNFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRYRQCF 120
                G  + LSF + +PN  PL+LS SFLPG+  Q+ AVAPNGL+L + RH  R+++  
Sbjct: 61  RTTATGRRHVLSFATPRPNSPPLELSLSFLPGQSPQVLAVAPNGLVLFQSRHRTRHQRQL 120

Query: 121 YTICKLSTQQWK 128
           YTICKL T+QW+
Sbjct: 121 YTICKLPTKQWQ 130

[Close]

BLAST of Bhi12M001348 vs. NCBI nr
Match: XP_022934602.1 (F-box protein At5g49610-like [Cucurbita moschata])

HSP 1 Score: 126.3 bits (316), Expect = 7.3e-26
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 1   MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQRL 60
           M++ + V+L+ILSR+P    GKIR LSK H +A+Y SY+K L A H   P L GFLLQ L
Sbjct: 1   MELPDDVILDILSRLPFDAVGKIRALSKSHNQATYTSYFKALAAGHQ--PLLLGFLLQSL 60

Query: 61  -----GHENCLSFISLQPNFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRYRQCF 120
                G  + LSF + +PN  PL+LS SFLPG+  Q+ AVAPNGL+L + RH  R+++  
Sbjct: 61  RTTATGRRHVLSFATPRPNSPPLELSLSFLPGQTPQVLAVAPNGLVLFQSRHRTRHQRQL 120

Query: 121 YTICKLSTQQWK 128
           YTICKL T+QW+
Sbjct: 121 YTICKLPTKQWQ 130

[Close]

BLAST of Bhi12M001348 vs. NCBI nr
Match: XP_004136723.1 (PREDICTED: F-box protein At5g49610 [Cucumis sativus] >KGN59248.1 hypothetical protein Csa_3G785420 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 5.2e-24
Identity = 71/133 (53.38%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 1   MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQR- 60
           MD    VVLEILSR  L + GKI+ LSKF+  +SY SYYK L+A++  G   DGFLLQ  
Sbjct: 1   MDFPEDVVLEILSRFYLNQAGKIQGLSKFYNNSSYNSYYKTLIAKNQPG-IADGFLLQSP 60

Query: 61  --LGHENCLSFISLQPN--FFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRY-RQC 120
               ++  +SF+S   +    PL+LS SFLPG + +IRAVAPNGLLLCE +H IR+ ++ 
Sbjct: 61  VPKSNDYIVSFVSPHKDSPVVPLNLSLSFLPGLNPKIRAVAPNGLLLCESQHSIRHNKRS 120

Query: 121 FYTICKLSTQQWK 128
            YTI KL TQQWK
Sbjct: 121 IYTITKLCTQQWK 132

The following BLAST results are available for this feature:

BLAST of Bhi12M001348 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi12M001348 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G05360.1	6.0e-06	29.27	BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effe...	[more]

BLAST of Bhi12M001348 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B7Y4\|A0A1S3B7Y4_CUCME	5.1e-28	54.89	F-box protein At5g49610-like OS=Cucumis melo OX=3656 GN=LOC103487156 PE=4 SV=1	[more]
tr\|A0A0A0LBP1\|A0A0A0LBP1_CUCSA	3.4e-24	53.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G785420 PE=4 SV=1	[more]
tr\|U7E0Y1\|U7E0Y1_POPTR	6.1e-05	29.92	Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_0143s...	[more]
tr\|A0A061GMD8\|A0A061GMD8_THECC	2.3e-04	34.38	F-box associated ubiquitination effector family protein, putative OS=Theobroma c...	[more]
tr\|W9RY39\|W9RY39_9ROSA	4.0e-04	34.65	F-box protein OS=Morus notabilis OX=981085 GN=L484_014172 PE=4 SV=1	[more]

BLAST of Bhi12M001348 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443600.1	7.8e-28	54.89	PREDICTED: F-box protein At5g49610-like [Cucumis melo]	[more]
XP_022983376.1	2.3e-27	53.03	F-box protein At5g49610-like [Cucurbita maxima]	[more]
XP_023528881.1	4.3e-26	51.52	F-box protein At5g49610-like [Cucurbita pepo subsp. pepo]	[more]
XP_022934602.1	7.3e-26	51.52	F-box protein At5g49610-like [Cucurbita moschata]	[more]
XP_004136723.1	5.2e-24	53.38	PREDICTED: F-box protein At5g49610 [Cucumis sativus] >KGN59248.1 hypothetical pr...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi12G001348	Bhi12G001348	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi12M001348.exon1	Bhi12M001348.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi12M001348	cds.Bhi12M001348	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi12M001348	Bhi12M001348-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR44547	FAMILY NOT NAMED	coord: 2..127