Bhi12G001348 (gene) Wax gourd

NameBhi12G001348
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionF-box protein
Locationchr12 : 49847175 .. 49847556 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATTTCCAACTACGTTGTATTGGAGATTTTGAGTCGAGTTCCCCTACCTAAAGGTGGAAAAATACGAGTTCTCTCGAAATTTCATGCCAAAGCTAGCTATGGTTCTTACTATAAAGATTTAGTTGCACAACATCACCATGGACCCTTCTTAGATGGCTTCCTCCTTCAAAGACTTGGCCATGAAAATTGTTTATCCTTTATTTCTCTACAACCCAACTTTTTCCCCTTGGATTTGTCGTTTAGTTTCCTCCCGGGACGTGACGTTCAAATTCGAGCCGTTGCTCCCAATGGTCTTCTTTTATGTGAAATCCGACACCCAATCCGTTACAGACAGTGTTTTTACACCATTTGCAAACTTTCTACACAACAATGGAAAG

mRNA sequence

ATGGATATTTCCAACTACGTTGTATTGGAGATTTTGAGTCGAGTTCCCCTACCTAAAGGTGGAAAAATACGAGTTCTCTCGAAATTTCATGCCAAAGCTAGCTATGGTTCTTACTATAAAGATTTAGTTGCACAACATCACCATGGACCCTTCTTAGATGGCTTCCTCCTTCAAAGACTTGGCCATGAAAATTGTTTATCCTTTATTTCTCTACAACCCAACTTTTTCCCCTTGGATTTGTCGTTTAGTTTCCTCCCGGGACGTGACGTTCAAATTCGAGCCGTTGCTCCCAATGGTCTTCTTTTATGTGAAATCCGACACCCAATCCGTTACAGACAGTGTTTTTACACCATTTGCAAACTTTCTACACAACAATGGAAAG

Coding sequence (CDS)

ATGGATATTTCCAACTACGTTGTATTGGAGATTTTGAGTCGAGTTCCCCTACCTAAAGGTGGAAAAATACGAGTTCTCTCGAAATTTCATGCCAAAGCTAGCTATGGTTCTTACTATAAAGATTTAGTTGCACAACATCACCATGGACCCTTCTTAGATGGCTTCCTCCTTCAAAGACTTGGCCATGAAAATTGTTTATCCTTTATTTCTCTACAACCCAACTTTTTCCCCTTGGATTTGTCGTTTAGTTTCCTCCCGGGACGTGACGTTCAAATTCGAGCCGTTGCTCCCAATGGTCTTCTTTTATGTGAAATCCGACACCCAATCCGTTACAGACAGTGTTTTTACACCATTTGCAAACTTTCTACACAACAATGGAAAG

Protein sequence

MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQRLGHENCLSFISLQPNFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRYRQCFYTICKLSTQQWK
BLAST of Bhi12G001348 vs. TAIR10
Match: AT2G05360.1 (BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT1G64295.1))

HSP 1 Score: 47.8 bits (112), Expect = 6.0e-06
Identity = 36/123 (29.27%), Postives = 66/123 (53.66%), Query Frame = 0

Query: 7   VVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQ--RLGHEN 66
           ++ E+LS +P  K GK R+L+K   K SY S++ +L    +   ++ G+ L+  + G+  
Sbjct: 10  MIQEVLSYLPASKNGKFRLLNKECNKRSYESWFLNL--NFYRTNYISGYFLESYKGGYTI 69

Query: 67  CLSFISLQPNFFPLDLSFSFLPGRDVQIRAV-APNGLLLCEIRHPIRYRQCFYTICKLST 126
             SF+  + +     +S  FLP  + +I+A  A +G+LLC     +      Y +CK +T
Sbjct: 70  DTSFVHERRDLENKGVSIDFLPQGERKIKACDASHGILLCVNDTGLIPE---YIVCKPTT 127

BLAST of Bhi12G001348 vs. TrEMBL
Match: tr|A0A1S3B7Y4|A0A1S3B7Y4_CUCME (F-box protein At5g49610-like OS=Cucumis melo OX=3656 GN=LOC103487156 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.1e-28
Identity = 73/133 (54.89%), Postives = 93/133 (69.92%), Query Frame = 0

Query: 1   MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQ-- 60
           MD+ + V+LEIL R  L + GKI+ LSKF+ K SY   YK L++++H  P LDGFLLQ  
Sbjct: 1   MDLPDDVILEILIRFSLNQAGKIQTLSKFYNKTSYSFCYKTLISENHSQPILDGFLLQSP 60

Query: 61  -RLGHENCLSFISLQP--NFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRY-RQC 120
               + + LSF+S  P  N  PL+LS +FLPG + QIRAVAPNGLLLCE +H IR+ ++ 
Sbjct: 61  KSKSNAHLLSFVSPHPNNNSPPLNLSLNFLPGLNPQIRAVAPNGLLLCETQHSIRHNKRL 120

Query: 121 FYTICKLSTQQWK 128
            YTI KLSTQQWK
Sbjct: 121 IYTITKLSTQQWK 133

BLAST of Bhi12G001348 vs. TrEMBL
Match: tr|A0A0A0LBP1|A0A0A0LBP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G785420 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-24
Identity = 71/133 (53.38%), Postives = 90/133 (67.67%), Query Frame = 0

Query: 1   MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQR- 60
           MD    VVLEILSR  L + GKI+ LSKF+  +SY SYYK L+A++  G   DGFLLQ  
Sbjct: 1   MDFPEDVVLEILSRFYLNQAGKIQGLSKFYNNSSYNSYYKTLIAKNQPG-IADGFLLQSP 60

Query: 61  --LGHENCLSFISLQPN--FFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRY-RQC 120
               ++  +SF+S   +    PL+LS SFLPG + +IRAVAPNGLLLCE +H IR+ ++ 
Sbjct: 61  VPKSNDYIVSFVSPHKDSPVVPLNLSLSFLPGLNPKIRAVAPNGLLLCESQHSIRHNKRS 120

Query: 121 FYTICKLSTQQWK 128
            YTI KL TQQWK
Sbjct: 121 IYTITKLCTQQWK 132

BLAST of Bhi12G001348 vs. TrEMBL
Match: tr|U7E0Y1|U7E0Y1_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_0143s00210g PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.1e-05
Identity = 38/127 (29.92%), Postives = 65/127 (51.18%), Query Frame = 0

Query: 2   DISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQ-RL 61
           D+   V+ E+L+   +    K R+LSK H K +Y S +  L  Q  +   + GFL+Q  +
Sbjct: 6   DLCRDVIYEVLTPSSMKTVEKYRLLSKEHNKLTYKSLFIKLHNQRTN--IVSGFLIQSMI 65

Query: 62  GHENCLSFISLQPNFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRYRQCFYTICK 121
            +E  + F+S   +     + F FLP + ++I +    G+LLC +     Y +  Y +C 
Sbjct: 66  RNEYKVFFVSTDASNTQTQMPFDFLP-KHMEIVSSTNQGVLLCRV-----YNESCYYVCN 124

Query: 122 LSTQQWK 128
           L+ QQW+
Sbjct: 126 LAIQQWQ 124

BLAST of Bhi12G001348 vs. TrEMBL
Match: tr|A0A061GMD8|A0A061GMD8_THECC (F-box associated ubiquitination effector family protein, putative OS=Theobroma cacao OX=3641 GN=TCM_037569 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-04
Identity = 44/128 (34.38%), Postives = 64/128 (50.00%), Query Frame = 0

Query: 2   DISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQRLG 61
           D+S+ V+ EILSR+PL    + R+LS+     +Y S +  L  Q  +   + G+ +Q   
Sbjct: 5   DLSSDVMFEILSRMPLKMLRRCRLLSRECNSLTYESSFMRLHCQRTN--TIAGYFIQTSK 64

Query: 62  HENCLS-FISL-QPNFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRYRQCFYTIC 121
                S F S+  P      L+  FLP   V IRA A  GL+LCE +      Q  Y +C
Sbjct: 65  KSRGYSTFCSIDNPGVASDQLTLDFLP-ETVHIRATADQGLMLCESQR----SQNRYYVC 124

Query: 122 KLSTQQWK 128
           K  T+QW+
Sbjct: 125 KPGTRQWE 125

BLAST of Bhi12G001348 vs. TrEMBL
Match: tr|W9RY39|W9RY39_9ROSA (F-box protein OS=Morus notabilis OX=981085 GN=L484_014172 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.0e-04
Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 0

Query: 2   DISNYVVL-EILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQRL 61
           DI   V+L EIL+R      G+ R + K   + +Y S +  L  Q      + GF +Q L
Sbjct: 6   DIPFDVILNEILTRTSPETVGRCRAVCKRLKEDTYHSSFTKLFLQRTR--TVSGFFIQTL 65

Query: 62  -GHENCLSFISLQPNFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRYRQCFYTIC 121
             ++   +FIS+        LS SFLP R ++I+A    GLLLC+I    +     Y +C
Sbjct: 66  RSNKRSCTFISMDTK---SKLSLSFLP-RHMKIKASTKQGLLLCKIEKFAKSMIPQYIVC 125

Query: 122 KLSTQQW 127
           K +TQQW
Sbjct: 126 KPTTQQW 126

BLAST of Bhi12G001348 vs. NCBI nr
Match: XP_008443600.1 (PREDICTED: F-box protein At5g49610-like [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 7.8e-28
Identity = 73/133 (54.89%), Postives = 93/133 (69.92%), Query Frame = 0

Query: 1   MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQ-- 60
           MD+ + V+LEIL R  L + GKI+ LSKF+ K SY   YK L++++H  P LDGFLLQ  
Sbjct: 1   MDLPDDVILEILIRFSLNQAGKIQTLSKFYNKTSYSFCYKTLISENHSQPILDGFLLQSP 60

Query: 61  -RLGHENCLSFISLQP--NFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRY-RQC 120
               + + LSF+S  P  N  PL+LS +FLPG + QIRAVAPNGLLLCE +H IR+ ++ 
Sbjct: 61  KSKSNAHLLSFVSPHPNNNSPPLNLSLNFLPGLNPQIRAVAPNGLLLCETQHSIRHNKRL 120

Query: 121 FYTICKLSTQQWK 128
            YTI KLSTQQWK
Sbjct: 121 IYTITKLSTQQWK 133

BLAST of Bhi12G001348 vs. NCBI nr
Match: XP_022983376.1 (F-box protein At5g49610-like [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 2.3e-27
Identity = 70/132 (53.03%), Postives = 90/132 (68.18%), Query Frame = 0

Query: 1   MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQRL 60
           M++ + V++EILSR+P    GKIR LSK H +A+Y SY+K L A H   P L GFLLQ L
Sbjct: 1   MELPDDVIIEILSRLPFHAVGKIRALSKSHNQATYTSYFKALAADHQ--PLLLGFLLQSL 60

Query: 61  -----GHENCLSFISLQPNFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRYRQCF 120
                G  + LSF + QPN  PL+LS SFLPG+  Q+ AVAPNGL+L + RH  RY++  
Sbjct: 61  RTTATGRRHVLSFATPQPNSPPLELSLSFLPGQSPQVLAVAPNGLVLFQTRHRTRYQRQL 120

Query: 121 YTICKLSTQQWK 128
           YTICKL T+QW+
Sbjct: 121 YTICKLPTKQWQ 130

BLAST of Bhi12G001348 vs. NCBI nr
Match: XP_023528881.1 (F-box protein At5g49610-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.1 bits (318), Expect = 4.3e-26
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 0

Query: 1   MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQRL 60
           M++ + V+L+ILSR+P    GKIR LSK H +A+Y SY+K L A H   P L GFLLQ L
Sbjct: 1   MELPDDVILDILSRLPFHAVGKIRALSKSHNQATYTSYFKALAADHQ--PLLLGFLLQSL 60

Query: 61  -----GHENCLSFISLQPNFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRYRQCF 120
                G  + LSF + +PN  PL+LS SFLPG+  Q+ AVAPNGL+L + RH  R+++  
Sbjct: 61  RTTATGRRHVLSFATPRPNSPPLELSLSFLPGQSPQVLAVAPNGLVLFQSRHRTRHQRQL 120

Query: 121 YTICKLSTQQWK 128
           YTICKL T+QW+
Sbjct: 121 YTICKLPTKQWQ 130

BLAST of Bhi12G001348 vs. NCBI nr
Match: XP_022934602.1 (F-box protein At5g49610-like [Cucurbita moschata])

HSP 1 Score: 126.3 bits (316), Expect = 7.3e-26
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 0

Query: 1   MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQRL 60
           M++ + V+L+ILSR+P    GKIR LSK H +A+Y SY+K L A H   P L GFLLQ L
Sbjct: 1   MELPDDVILDILSRLPFDAVGKIRALSKSHNQATYTSYFKALAAGHQ--PLLLGFLLQSL 60

Query: 61  -----GHENCLSFISLQPNFFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRYRQCF 120
                G  + LSF + +PN  PL+LS SFLPG+  Q+ AVAPNGL+L + RH  R+++  
Sbjct: 61  RTTATGRRHVLSFATPRPNSPPLELSLSFLPGQTPQVLAVAPNGLVLFQSRHRTRHQRQL 120

Query: 121 YTICKLSTQQWK 128
           YTICKL T+QW+
Sbjct: 121 YTICKLPTKQWQ 130

BLAST of Bhi12G001348 vs. NCBI nr
Match: XP_004136723.1 (PREDICTED: F-box protein At5g49610 [Cucumis sativus] >KGN59248.1 hypothetical protein Csa_3G785420 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 5.2e-24
Identity = 71/133 (53.38%), Postives = 90/133 (67.67%), Query Frame = 0

Query: 1   MDISNYVVLEILSRVPLPKGGKIRVLSKFHAKASYGSYYKDLVAQHHHGPFLDGFLLQR- 60
           MD    VVLEILSR  L + GKI+ LSKF+  +SY SYYK L+A++  G   DGFLLQ  
Sbjct: 1   MDFPEDVVLEILSRFYLNQAGKIQGLSKFYNNSSYNSYYKTLIAKNQPG-IADGFLLQSP 60

Query: 61  --LGHENCLSFISLQPN--FFPLDLSFSFLPGRDVQIRAVAPNGLLLCEIRHPIRY-RQC 120
               ++  +SF+S   +    PL+LS SFLPG + +IRAVAPNGLLLCE +H IR+ ++ 
Sbjct: 61  VPKSNDYIVSFVSPHKDSPVVPLNLSLSFLPGLNPKIRAVAPNGLLLCESQHSIRHNKRS 120

Query: 121 FYTICKLSTQQWK 128
            YTI KL TQQWK
Sbjct: 121 IYTITKLCTQQWK 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT2G05360.16.0e-0629.27BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effe... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3B7Y4|A0A1S3B7Y4_CUCME5.1e-2854.89F-box protein At5g49610-like OS=Cucumis melo OX=3656 GN=LOC103487156 PE=4 SV=1[more]
tr|A0A0A0LBP1|A0A0A0LBP1_CUCSA3.4e-2453.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G785420 PE=4 SV=1[more]
tr|U7E0Y1|U7E0Y1_POPTR6.1e-0529.92Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_0143s... [more]
tr|A0A061GMD8|A0A061GMD8_THECC2.3e-0434.38F-box associated ubiquitination effector family protein, putative OS=Theobroma c... [more]
tr|W9RY39|W9RY39_9ROSA4.0e-0434.65F-box protein OS=Morus notabilis OX=981085 GN=L484_014172 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_008443600.17.8e-2854.89PREDICTED: F-box protein At5g49610-like [Cucumis melo][more]
XP_022983376.12.3e-2753.03F-box protein At5g49610-like [Cucurbita maxima][more]
XP_023528881.14.3e-2651.52F-box protein At5g49610-like [Cucurbita pepo subsp. pepo][more]
XP_022934602.17.3e-2651.52F-box protein At5g49610-like [Cucurbita moschata][more]
XP_004136723.15.2e-2453.38PREDICTED: F-box protein At5g49610 [Cucumis sativus] >KGN59248.1 hypothetical pr... [more]

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M001348Bhi12M001348mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR44547FAMILY NOT NAMEDcoord: 2..127

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi12G001348Cucumber (Chinese Long) v2cuwgoB121
Bhi12G001348Cucumber (Chinese Long) v2cuwgoB126
Bhi12G001348Cucumber (Chinese Long) v2cuwgoB251
Bhi12G001348Bottle gourd (USVL1VR-Ls)lsiwgoB007
Bhi12G001348Bottle gourd (USVL1VR-Ls)lsiwgoB027
Bhi12G001348Bottle gourd (USVL1VR-Ls)lsiwgoB421
Bhi12G001348Melon (DHL92) v3.6.1medwgoB449
Bhi12G001348Melon (DHL92) v3.6.1medwgoB453
Bhi12G001348Melon (DHL92) v3.6.1medwgoB515
Bhi12G001348Melon (DHL92) v3.5.1mewgoB446
Bhi12G001348Melon (DHL92) v3.5.1mewgoB450
Bhi12G001348Melon (DHL92) v3.5.1mewgoB514
Bhi12G001348Watermelon (Charleston Gray)wcgwgoB412
Bhi12G001348Watermelon (Charleston Gray)wcgwgoB494
Bhi12G001348Watermelon (97103) v2wgowmbB072
Bhi12G001348Watermelon (97103) v2wgowmbB089
Bhi12G001348Watermelon (97103) v1wgowmB062
Bhi12G001348Watermelon (97103) v1wgowmB097
Bhi12G001348Silver-seed gourdcarwgoB0281
Bhi12G001348Silver-seed gourdcarwgoB0282
Bhi12G001348Silver-seed gourdcarwgoB0290
Bhi12G001348Silver-seed gourdcarwgoB1114
Bhi12G001348Silver-seed gourdcarwgoB1263
Bhi12G001348Cucumber (Gy14) v1cgywgoB510
Bhi12G001348Cucumber (Gy14) v1cgywgoB763
Bhi12G001348Cucumber (Gy14) v2cgybwgoB117
Bhi12G001348Cucumber (Gy14) v2cgybwgoB123
Bhi12G001348Cucurbita maxima (Rimu)cmawgoB0311
Bhi12G001348Cucurbita maxima (Rimu)cmawgoB0455
Bhi12G001348Cucurbita maxima (Rimu)cmawgoB0468
Bhi12G001348Cucurbita maxima (Rimu)cmawgoB0997
Bhi12G001348Cucurbita maxima (Rimu)cmawgoB1090
Bhi12G001348Cucurbita maxima (Rimu)cmawgoB1102
Bhi12G001348Cucurbita moschata (Rifu)cmowgoB0299
Bhi12G001348Cucurbita moschata (Rifu)cmowgoB0466
Bhi12G001348Cucurbita moschata (Rifu)cmowgoB0995
Bhi12G001348Cucurbita moschata (Rifu)cmowgoB1084
Bhi12G001348Cucurbita moschata (Rifu)cmowgoB1096
Bhi12G001348Cucurbita pepo (Zucchini)cpewgoB0185
Bhi12G001348Cucurbita pepo (Zucchini)cpewgoB0385
Bhi12G001348Wild cucumber (PI 183967)cpiwgoB122
Bhi12G001348Wild cucumber (PI 183967)cpiwgoB127
Bhi12G001348Wild cucumber (PI 183967)cpiwgoB251
Bhi12G001348Cucumber (Chinese Long) v3cucwgoB129
Bhi12G001348Cucumber (Chinese Long) v3cucwgoB134
Bhi12G001348Cucumber (Chinese Long) v3cucwgoB254