Bhi12M001137 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12M001137
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr12 : 40399388 .. 40399555 (+)
Sequence length	168

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Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTTGAAGGGAAGACCAGACAGTGGTGCTTTTAAAGAGTTAAACGGTGATGGTGGTCTAGGAGAGTCTAGCGGTGTATCTAATAAAGGTTTTAAGACATCTAACATGAGTGATGAAGATTGGGAGGAGATAGATTTGAGAGCTGCAAGTACAATCATGCTAAATTTG

mRNA sequence

GCCTTGAAGGGAAGACCAGACAGTGGTGCTTTTAAAGAGTTAAACGGTGATGGTGGTCTAGGAGAGTCTAGCGGTGTATCTAATAAAGGTTTTAAGACATCTAACATGAGTGATGAAGATTGGGAGGAGATAGATTTGAGAGCTGCAAGTACAATCATGCTAAATTTG

Coding sequence (CDS)

GCCTTGAAGGGAAGACCAGACAGTGGTGCTTTTAAAGAGTTAAACGGTGATGGTGGTCTAGGAGAGTCTAGCGGTGTATCTAATAAAGGTTTTAAGACATCTAACATGAGTGATGAAGATTGGGAGGAGATAGATTTGAGAGCTGCAAGTACAATCATGCTAAATTTG

Protein sequence

ALKGRPDSGAFKELNGDGGLGESSGVSNKGFKTSNMSDEDWEEIDLRAASTIMLNL

Homology

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BLAST of Bhi12M001137 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 8.8e-08
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 1   ALKGRPDSGAFKELNGDGGLGESSGVSNKGFKTSNMSDEDWEEIDLRAASTIMLNL 57
           ALKGRP  GA ++L+ DGG  ESSG S++G K S+MS EDWEE+DLRAAS I  +L
Sbjct: 334 ALKGRPSEGASEKLSDDGGPMESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSL 389

The following BLAST results are available for this feature:

BLAST of Bhi12M001137 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi12M001137 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi12M001137 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Bhi12M001137 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	8.8e-08	62.50	uncharacterized protein LOC111010521 [Momordica charantia]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi12G001137	Bhi12G001137	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi12M001137.exon1	Bhi12M001137.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi12M001137	cds.Bhi12M001137	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi12M001137	Bhi12M001137-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40