Bhi12G001137 (gene) Wax gourd

Overview
NameBhi12G001137
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr12 : 40399388 .. 40399555 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCTTGAAGGGAAGACCAGACAGTGGTGCTTTTAAAGAGTTAAACGGTGATGGTGGTCTAGGAGAGTCTAGCGGTGTATCTAATAAAGGTTTTAAGACATCTAACATGAGTGATGAAGATTGGGAGGAGATAGATTTGAGAGCTGCAAGTACAATCATGCTAAATTTG

mRNA sequence

GCCTTGAAGGGAAGACCAGACAGTGGTGCTTTTAAAGAGTTAAACGGTGATGGTGGTCTAGGAGAGTCTAGCGGTGTATCTAATAAAGGTTTTAAGACATCTAACATGAGTGATGAAGATTGGGAGGAGATAGATTTGAGAGCTGCAAGTACAATCATGCTAAATTTG

Coding sequence (CDS)

GCCTTGAAGGGAAGACCAGACAGTGGTGCTTTTAAAGAGTTAAACGGTGATGGTGGTCTAGGAGAGTCTAGCGGTGTATCTAATAAAGGTTTTAAGACATCTAACATGAGTGATGAAGATTGGGAGGAGATAGATTTGAGAGCTGCAAGTACAATCATGCTAAATTTG

Protein sequence

ALKGRPDSGAFKELNGDGGLGESSGVSNKGFKTSNMSDEDWEEIDLRAASTIMLNL
Homology
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BLAST of Bhi12G001137 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 8.8e-08
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 1   ALKGRPDSGAFKELNGDGGLGESSGVSNKGFKTSNMSDEDWEEIDLRAASTIMLNL 57
           ALKGRP  GA ++L+ DGG  ESSG S++G K S+MS EDWEE+DLRAAS I  +L
Sbjct: 334 ALKGRPSEGASEKLSDDGGPMESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSL 389

The following BLAST results are available for this feature:
BLAST of Bhi12G001137 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi12G001137 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi12G001137 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Bhi12G001137 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022139673.18.8e-0862.50uncharacterized protein LOC111010521 [Momordica charantia][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M001137Bhi12M001137mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi12G001137Cucumber (Gy14) v1cgywgoB496
Bhi12G001137Cucumber (Gy14) v2cgybwgoB428
Bhi12G001137Cucurbita maxima (Rimu)cmawgoB0373
Bhi12G001137Cucurbita maxima (Rimu)cmawgoB0827
Bhi12G001137Cucurbita moschata (Rifu)cmowgoB0367
Bhi12G001137Cucurbita moschata (Rifu)cmowgoB0822
Bhi12G001137Cucurbita pepo (Zucchini)cpewgoB0218
Bhi12G001137Cucurbita pepo (Zucchini)cpewgoB0490
Bhi12G001137Wild cucumber (PI 183967)cpiwgoB455
Bhi12G001137Cucumber (Chinese Long) v3cucwgoB463
Bhi12G001137Cucumber (Chinese Long) v2cuwgoB452
Bhi12G001137Bottle gourd (USVL1VR-Ls)lsiwgoB030
Bhi12G001137Melon (DHL92) v3.6.1medwgoB012
Bhi12G001137Melon (DHL92) v3.5.1mewgoB015
Bhi12G001137Watermelon (Charleston Gray)wcgwgoB326
Bhi12G001137Watermelon (97103) v2wgowmbB070
Bhi12G001137Watermelon (97103) v1wgowmB058
Bhi12G001137Silver-seed gourdcarwgoB0637
Bhi12G001137Silver-seed gourdcarwgoB0962