Bhi11M002226 (mRNA) Wax gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCTCAGTTCAAGCTCAATCATTGCAAAGAATTAAGAAGATCATTGCTTTTTCTAAGCGGGTCTCTTCTTTCTCTACAAACCTCTAACTTTCTCAGTTTCTTCTTTCTTTATCACCATGGACATGAAGAAGGTGACCTGTGCCGTCCTCGTCTCCGCTGCCGTCATGAGTGCTACTATGGCCTCTGGTGAAGGCCCCGCTCCAGCACCTGGCCTGTCCTCCGACGCGGCAGCTGCTGCTTTACCAGCTGTTGGAGCTTTCATTGGTGCTTCTCTTGCATCTTTCTTTGCCTATTACTTGTAAGAAGCTAAGTAAAGAATAGGAAGGCATAGGGAGGAATGAAGGGAAAAAAATATTATGTAAACATGGGAAAGAGAAACTCTGGTTAGTGGTTGGTGTGTGGCTTGGAAGGAAAAAAAAGTATTGTTTATTTGAATTTGGTTTGAGAATTTAATGAACAAAATCTTTGTTGAATTATATATGTTTACCCTTTTTGTCATGAATTTATATATCTAATTATTATGGCTTATTGATGTCTATATTTATATATTA GCTCAGTTCAAGCTCAATCATTGCAAAGAATTAAGAAGATCATTGCTTTTTCTAAGCGGGTCTCTTCTTTCTCTACAAACCTCTAACTTTCTCAGTTTCTTCTTTCTTTATCACCATGGACATGAAGAAGGTGACCTGTGCCGTCCTCGTCTCCGCTGCCGTCATGAGTGCTACTATGGCCTCTGGTGAAGGCCCCGCTCCAGCACCTGGCCTGTCCTCCGACGCGGCAGCTGCTGCTTTACCAGCTGTTGGAGCTTTCATTGGTGCTTCTCTTGCATCTTTCTTTGCCTATTACTTGTAAGAAGCTAAGTAAAGAATAGGAAGGCATAGGGAGGAATGAAGGGAAAAAAATATTATGTAAACATGGGAAAGAGAAACTCTGGTTAGTGGTTGGTGTGTGGCTTGGAAGGAAAAAAAAGTATTGTTTATTTGAATTTGGTTTGAGAATTTAATGAACAAAATCTTTGTTGAATTATATATGTTTACCCTTTTTGTCATGAATTTATATATCTAATTATTATGGCTTATTGATGTCTATATTTATATATTA ATGGACATGAAGAAGGTGACCTGTGCCGTCCTCGTCTCCGCTGCCGTCATGAGTGCTACTATGGCCTCTGGTGAAGGCCCCGCTCCAGCACCTGGCCTGTCCTCCGACGCGGCAGCTGCTGCTTTACCAGCTGTTGGAGCTTTCATTGGTGCTTCTCTTGCATCTTTCTTTGCCTATTACTTGTAA MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYYL
BLAST of Bhi11M002226 vs. Swiss-Prot
Match: sp|Q8S2W4|AGP23_ARATH (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2) HSP 1 Score: 50.4 bits (119), Expect = 8.0e-06 Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0
BLAST of Bhi11M002226 vs. TAIR10
Match: AT3G57690.1 (arabinogalactan protein 23) HSP 1 Score: 50.4 bits (119), Expect = 4.4e-07 Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0
BLAST of Bhi11M002226 vs. TAIR10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)) HSP 1 Score: 42.7 bits (99), Expect = 9.2e-05 Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 0
BLAST of Bhi11M002226 vs. TrEMBL
Match: tr|F6HL55|F6HL55_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g07980 PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 3.8e-05 Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0
BLAST of Bhi11M002226 vs. TrEMBL
Match: tr|D7LVV7|D7LVV7_ARALL (Expressed protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_486219 PE=4 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 2.5e-04 Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0
BLAST of Bhi11M002226 vs. TrEMBL
Match: tr|A0A2K1ZXB0|A0A2K1ZXB0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200v3 PE=4 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 3.2e-04 Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 0
BLAST of Bhi11M002226 vs. NCBI nr
Match: XP_021282798.1 (arabinogalactan peptide 23-like [Herrania umbratica]) HSP 1 Score: 55.5 bits (132), Expect = 7.6e-05 Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 0
BLAST of Bhi11M002226 vs. NCBI nr
Match: XP_002876432.1 (arabinogalactan peptide 23 [Arabidopsis lyrata subsp. lyrata] >EFH52691.1 expressed protein [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 53.1 bits (126), Expect = 3.8e-04 Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0
BLAST of Bhi11M002226 vs. NCBI nr
Match: PNT29922.1 (hypothetical protein POPTR_006G056200v3 [Populus trichocarpa]) HSP 1 Score: 52.8 bits (125), Expect = 4.9e-04 Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 0
BLAST of Bhi11M002226 vs. NCBI nr
Match: XP_003633558.1 (PREDICTED: arabinogalactan peptide 23-like [Vitis vinifera]) HSP 1 Score: 52.0 bits (123), Expect = 8.4e-04 Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0
The following BLAST results are available for this feature:
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
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