Bhi11G002226 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G002226
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	arabinogalactan protein 23
Location	chr11 : 72026709 .. 72027258 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCAGTTCAAGCTCAATCATTGCAAAGAATTAAGAAGATCATTGCTTTTTCTAAGCGGGTCTCTTCTTTCTCTACAAACCTCTAACTTTCTCAGTTTCTTCTTTCTTTATCACCATGGACATGAAGAAGGTGACCTGTGCCGTCCTCGTCTCCGCTGCCGTCATGAGTGCTACTATGGCCTCTGGTGAAGGCCCCGCTCCAGCACCTGGCCTGTCCTCCGACGCGGCAGCTGCTGCTTTACCAGCTGTTGGAGCTTTCATTGGTGCTTCTCTTGCATCTTTCTTTGCCTATTACTTGTAAGAAGCTAAGTAAAGAATAGGAAGGCATAGGGAGGAATGAAGGGAAAAAAATATTATGTAAACATGGGAAAGAGAAACTCTGGTTAGTGGTTGGTGTGTGGCTTGGAAGGAAAAAAAAGTATTGTTTATTTGAATTTGGTTTGAGAATTTAATGAACAAAATCTTTGTTGAATTATATATGTTTACCCTTTTTGTCATGAATTTATATATCTAATTATTATGGCTTATTGATGTCTATATTTATATATTA

mRNA sequence

GCTCAGTTCAAGCTCAATCATTGCAAAGAATTAAGAAGATCATTGCTTTTTCTAAGCGGGTCTCTTCTTTCTCTACAAACCTCTAACTTTCTCAGTTTCTTCTTTCTTTATCACCATGGACATGAAGAAGGTGACCTGTGCCGTCCTCGTCTCCGCTGCCGTCATGAGTGCTACTATGGCCTCTGGTGAAGGCCCCGCTCCAGCACCTGGCCTGTCCTCCGACGCGGCAGCTGCTGCTTTACCAGCTGTTGGAGCTTTCATTGGTGCTTCTCTTGCATCTTTCTTTGCCTATTACTTGTAAGAAGCTAAGTAAAGAATAGGAAGGCATAGGGAGGAATGAAGGGAAAAAAATATTATGTAAACATGGGAAAGAGAAACTCTGGTTAGTGGTTGGTGTGTGGCTTGGAAGGAAAAAAAAGTATTGTTTATTTGAATTTGGTTTGAGAATTTAATGAACAAAATCTTTGTTGAATTATATATGTTTACCCTTTTTGTCATGAATTTATATATCTAATTATTATGGCTTATTGATGTCTATATTTATATATTA

Coding sequence (CDS)

ATGGACATGAAGAAGGTGACCTGTGCCGTCCTCGTCTCCGCTGCCGTCATGAGTGCTACTATGGCCTCTGGTGAAGGCCCCGCTCCAGCACCTGGCCTGTCCTCCGACGCGGCAGCTGCTGCTTTACCAGCTGTTGGAGCTTTCATTGGTGCTTCTCTTGCATCTTTCTTTGCCTATTACTTGTAA

Protein sequence

MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYYL

Homology

[Close]

BLAST of Bhi11G002226 vs. Swiss-Prot
Match: sp|Q8S2W4|AGP23_ARATH (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 8.0e-06
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEXXXXXXXLSSDAAAAALPAVGAFIGASLASFFAYY 60
          M+MKK+ C VL +AA M+A MA+ E        +S AA+AALPA+G+ +GASL S F+YY
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPAS-AASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of Bhi11G002226 vs. TAIR10
Match: AT3G57690.1 (arabinogalactan protein 23)

HSP 1 Score: 50.4 bits (119), Expect = 4.4e-07
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEXXXXXXXLSSDAAAAALPAVGAFIGASLASFFAYY 60
          M+MKK+ C VL +AA M+A MA+ E        +S AA+AALPA+G+ +GASL S F+YY
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPAS-AASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of Bhi11G002226 vs. TAIR10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1))

HSP 1 Score: 42.7 bits (99), Expect = 9.2e-05
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEXXXXXXXLSSDAAAAALPAVGAFIGASLASFFAYY 60
          M+MKK+ C V+ +AA M+A MA+ E             + A+PA+G+ +GASL S FAYY
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAA-EVGAPAPGXXXXXXSVAVPALGSLVGASLVSLFAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of Bhi11G002226 vs. TrEMBL
Match: tr|F6HL55|F6HL55_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g07980 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.8e-05
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEXXXXXXXLSSDAAAAALPAVGAFIGASLASFFAYY 60
          MDMKK++CAVL++AA MSA MAS E         S+AA A LP +G+ +GAS+ SFFA+Y
Sbjct: 1  MDMKKISCAVLIAAASMSAAMASDEVMSPAPG-PSNAAQATLPVLGSLVGASVLSFFAFY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of Bhi11G002226 vs. TrEMBL
Match: tr|D7LVV7|D7LVV7_ARALL (Expressed protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_486219 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-04
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEXXXXXXXLSSDAAAAALPAVGAFIGASLASFFAYY 60
          M+MKK+ C VL +AA M+A MA+ E        ++ AA+ ALPA+G+ +GASL S F+YY
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAADEVGAPAPGPAASAASVALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of Bhi11G002226 vs. TrEMBL
Match: tr|A0A2K1ZXB0|A0A2K1ZXB0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200v3 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.2e-04
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEXXXXXXXLSSDAAAAALPAVGAFIGASLASFFAYY 60
          M++KK++CAVLV AA MSA +A+ E        +S  A+A LP VG+ IGASL SFFAYY
Sbjct: 1  MELKKISCAVLVVAASMSAALAADEISAPAPSPTS-GASATLPVVGSLIGASLVSFFAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of Bhi11G002226 vs. NCBI nr
Match: XP_021282798.1 (arabinogalactan peptide 23-like [Herrania umbratica])

HSP 1 Score: 55.5 bits (132), Expect = 7.6e-05
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMAS-GEXXXXXXXLSSDAAAAALPAVGAFIGASLASFFAY 60
          MDMKK++CAV+V+AA MSA +AS  +        ++ AA++ALP +G+ +GASL SFFAY
Sbjct: 1  MDMKKISCAVIVAAASMSAVLASTDDAPAAAPGPATSAASSALPVLGSLVGASLVSFFAY 60

Query: 61 YL 62
          YL
Sbjct: 61 YL 62

[Close]

BLAST of Bhi11G002226 vs. NCBI nr
Match: XP_002876432.1 (arabinogalactan peptide 23 [Arabidopsis lyrata subsp. lyrata] >EFH52691.1 expressed protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 53.1 bits (126), Expect = 3.8e-04
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEXXXXXXXLSSDAAAAALPAVGAFIGASLASFFAYY 60
          M+MKK+ C VL +AA M+A MA+ E        ++ AA+ ALPA+G+ +GASL S F+YY
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAADEVGAPAPGPAASAASVALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of Bhi11G002226 vs. NCBI nr
Match: PNT29922.1 (hypothetical protein POPTR_006G056200v3 [Populus trichocarpa])

HSP 1 Score: 52.8 bits (125), Expect = 4.9e-04
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEXXXXXXXLSSDAAAAALPAVGAFIGASLASFFAYY 60
          M++KK++CAVLV AA MSA +A+ E        +S  A+A LP VG+ IGASL SFFAYY
Sbjct: 1  MELKKISCAVLVVAASMSAALAADEISAPAPSPTS-GASATLPVVGSLIGASLVSFFAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of Bhi11G002226 vs. NCBI nr
Match: XP_003633558.1 (PREDICTED: arabinogalactan peptide 23-like [Vitis vinifera])

HSP 1 Score: 52.0 bits (123), Expect = 8.4e-04
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEXXXXXXXLSSDAAAAALPAVGAFIGASLASFFAYY 60
          MDMKK+ CAVLV+AA MSA +AS +        + + AAA+LP  G+ +GAS+ SFFA+Y
Sbjct: 1  MDMKKIACAVLVAAASMSAVLASDDIYAPAPAPAHN-AAASLPVAGSLVGASVLSFFAFY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

The following BLAST results are available for this feature:

BLAST of Bhi11G002226 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8S2W4\|AGP23_ARATH	8.0e-06	52.46	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Bhi11G002226 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57690.1	4.4e-07	52.46	arabinogalactan protein 23	[more]
AT2G41905.1	9.2e-05	44.26	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

BLAST of Bhi11G002226 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|F6HL55\|F6HL55_VITVI	3.8e-05	55.74	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g07980 PE=4 SV=...	[more]
tr\|D7LVV7\|D7LVV7_ARALL	2.5e-04	49.18	Expressed protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_486...	[more]
tr\|A0A2K1ZXB0\|A0A2K1ZXB0_POPTR	3.2e-04	55.74	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200v3 PE=...	[more]

BLAST of Bhi11G002226 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021282798.1	7.6e-05	53.23	arabinogalactan peptide 23-like [Herrania umbratica]	[more]
XP_002876432.1	3.8e-04	49.18	arabinogalactan peptide 23 [Arabidopsis lyrata subsp. lyrata] >EFH52691.1 expres...	[more]
PNT29922.1	4.9e-04	55.74	hypothetical protein POPTR_006G056200v3 [Populus trichocarpa]	[more]
XP_003633558.1	8.4e-04	52.46	PREDICTED: arabinogalactan peptide 23-like [Vitis vinifera]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M002226	Bhi11M002226	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672	FAMILY NOT NAMED	coord: 1..61

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G002226	Cucumber (Gy14) v1	cgywgoB482
Bhi11G002226	Cucumber (Gy14) v2	cgybwgoB214
Bhi11G002226	Cucurbita maxima (Rimu)	cmawgoB0293
Bhi11G002226	Cucurbita maxima (Rimu)	cmawgoB0987
Bhi11G002226	Cucurbita moschata (Rifu)	cmowgoB0282
Bhi11G002226	Cucurbita moschata (Rifu)	cmowgoB0984
Bhi11G002226	Cucurbita pepo (Zucchini)	cpewgoB0746
Bhi11G002226	Cucurbita pepo (Zucchini)	cpewgoB1087
Bhi11G002226	Wild cucumber (PI 183967)	cpiwgoB223
Bhi11G002226	Cucumber (Chinese Long) v3	cucwgoB227
Bhi11G002226	Cucumber (Chinese Long) v2	cuwgoB223
Bhi11G002226	Bottle gourd (USVL1VR-Ls)	lsiwgoB302
Bhi11G002226	Melon (DHL92) v3.6.1	medwgoB384
Bhi11G002226	Melon (DHL92) v3.5.1	mewgoB382
Bhi11G002226	Watermelon (Charleston Gray)	wcgwgoB097
Bhi11G002226	Watermelon (97103) v2	wgowmbB018
Bhi11G002226	Watermelon (97103) v1	wgowmB024
Bhi11G002226	Silver-seed gourd	carwgoB0197
Bhi11G002226	Silver-seed gourd	carwgoB0320