Bhi11M001997 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11M001997
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr11 : 65034565 .. 65034795 (+)
Sequence length	231

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAACGTCGAAGGCGCCGGCAAGGGTCTCACCGTTGAACTCTGCAAGGTCCTCGCCACTTCATGTTAACCTTTGGCCCGATGAGGAGCTTGAGAAAGGTGGTGAGAAGGCAACAGGCACAGCTGCGGCCGTGGCCATGGCGGTGGTAGGTCTTTGCCGGAGGAGGATGATACGCGGAGTGGATGTTTTGTACGAACTTTCTCATTCGCATTTTTGCATTCTTTTTTAG

mRNA sequence

ATGTTAACGTCGAAGGCGCCGGCAAGGGTCTCACCGTTGAACTCTGCAAGGTCCTCGCCACTTCATGTTAACCTTTGGCCCGATGAGGAGCTTGAGAAAGGTGGTGAGAAGGCAACAGGCACAGCTGCGGCCGTGGCCATGGCGGTGGTAGGTCTTTGCCGGAGGAGGATGATACGCGGAGTGGATGTTTTGTACGAACTTTCTCATTCGCATTTTTGCATTCTTTTTTAG

Coding sequence (CDS)

ATGTTAACGTCGAAGGCGCCGGCAAGGGTCTCACCGTTGAACTCTGCAAGGTCCTCGCCACTTCATGTTAACCTTTGGCCCGATGAGGAGCTTGAGAAAGGTGGTGAGAAGGCAACAGGCACAGCTGCGGCCGTGGCCATGGCGGTGGTAGGTCTTTGCCGGAGGAGGATGATACGCGGAGTGGATGTTTTGTACGAACTTTCTCATTCGCATTTTTGCATTCTTTTTTAG

Protein sequence

MLTSKAPARVSPLNSARSSPLHVNLWPDEELEKGGEKATGTAAAVAMAVVGLCRRRMIRGVDVLYELSHSHFCILF

Homology

[Close]

BLAST of Bhi11M001997 vs. TrEMBL
Match: tr|A0A0A0LER2|A0A0A0LER2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G779015 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-04
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 28 DEELEKGGEKATGTAAAVAMAVVGLCRRRMIRGVDVLYEL 68
          DEELEKGGEKA G A+AVA+A+VGLCRRR  R V    E+
Sbjct: 43 DEELEKGGEKAAGAASAVAVAMVGLCRRRDGRAVKGAVEM 82

[Close]

BLAST of Bhi11M001997 vs. NCBI nr
Match: KGN59197.1 (hypothetical protein Csa_3G779015 [Cucumis sativus])

HSP 1 Score: 52.4 bits (124), Expect = 8.0e-04
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 28 DEELEKGGEKATGTAAAVAMAVVGLCRRRMIRGVDVLYEL 68
          DEELEKGGEKA G A+AVA+A+VGLCRRR  R V    E+
Sbjct: 43 DEELEKGGEKAAGAASAVAVAMVGLCRRRDGRAVKGAVEM 82

The following BLAST results are available for this feature:

BLAST of Bhi11M001997 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi11M001997 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi11M001997 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LER2\|A0A0A0LER2_CUCSA	5.3e-04	67.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G779015 PE=4 SV=1	[more]

BLAST of Bhi11M001997 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59197.1	8.0e-04	67.50	hypothetical protein Csa_3G779015 [Cucumis sativus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi11G001997	Bhi11G001997	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi11M001997.exon1	Bhi11M001997.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi11M001997	cds.Bhi11M001997	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi11M001997	Bhi11M001997-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21