Bhi11M000113 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11M000113
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Receptor-type tyrosine-protein phosphatase U
Location	chr11 : 2944520 .. 2944841 (+)
Sequence length	322

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTTTTGATGACGACTTCAATTGGAAGGGTAACGAGAATCACTTGCAGAATTTCATCAAATACAAGGAGGTTTTCAAAGATTTGCCTCTCAATTTGAAAGGGTGGTTGGTGTTTAGAAATGGTGTTGCGATTGGTTTCGATGATAGTGAAGATTTGGAATTCGAAATTAGTGTTGATTCTGATGATTTGGAGGAGAAAGAAGAGGAAGAAAAGGAAGAGGGGGATGAAGATTTGAAAAGGAGAGAACAAGGCGAGGGAAAAGTTGATGAACATGGTGGTGGTCATGAAGTGGTGGTAGTCGTCGGAGATGAAGGATTTTAA

mRNA sequence

GGTTTTTGATGACGACTTCAATTGGAAGGGTAACGAGAATCACTTGCAGAATTTCATCAAATACAAGGAGGTTTTCAAAGATTTGCCTCTCAATTTGAAAGGGTGGTTGGTGTTTAGAAATGGTGTTGCGATTGGTTTCGATGATAGTGAAGATTTGGAATTCGAAATTAGTGTTGATTCTGATGATTTGGAGGAGAAAGAAGAGGAAGAAAAGGAAGAGGGGGATGAAGATTTGAAAAGGAGAGAACAAGGCGAGGGAAAAGTTGATGAACATGGTGGTGGTCATGAAGTGGTGGTAGTCGTCGGAGATGAAGGATTTTAA

Coding sequence (CDS)

GGTTTTTGATGACGACTTCAATTGGAAGGGTAACGAGAATCACTTGCAGAATTTCATCAAATACAAGGAGGTTTTCAAAGATTTGCCTCTCAATTTGAAAGGGTGGTTGGTGTTTAGAAATGGTGTTGCGATTGGTTTCGATGATAGTGAAGATTTGGAATTCGAAATTAGTGTTGATTCTGATGATTTGGAGGAGAAAGAAGAGGAAGAAAAGGAAGAGGGGGATGAAGATTTGAAAAGGAGAGAACAAGGCGAGGGAAAAGTTGATGAACATGGTGGTGGTCATGAAGTGGTGGTAGTCGTCGGAGATGAAGGATTTTAA

Protein sequence

VFDDDFNWKGNENHLQNFIKYKEVFKDLPLNLKGWLVFRNGVAIGFDDSEDLEFEISVDSDDLEEKEEEEKEEGDEDLKRREQGEGKVDEHGGGHEVVVVVGDEGF

Homology

[Close]

BLAST of Bhi11M000113 vs. TrEMBL
Match: tr|A0A0A0LB45|A0A0A0LB45_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G365940 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.0e-13
Identity = 70/106 (66.04%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 1   VFDDDFNWKGNENHLQNFIKYKEVFKDLPLNLKG-WLVFRNGVAIGFDDSEDLEFEISVD 60
           V DDDFNWK  ENH QNF+KYK+VF DLPL+LKG  LVF NG A+ FD SEDLEF     
Sbjct: 85  VSDDDFNWKDGENHWQNFMKYKQVFGDLPLDLKGKRLVFGNGAAVDFDGSEDLEF---XX 144

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXKVDEHGGGHEVVVVVGDEG 106
           XXXXXXXXXXXXXXXXXXX        K   H GG +VV VVG+EG
Sbjct: 145 XXXXXXXXXXXXXXXXXXXKGREHGRRKHPGHRGGPQVVEVVGNEG 187

[Close]

BLAST of Bhi11M000113 vs. TrEMBL
Match: tr|A0A251Q0Q8|A0A251Q0Q8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G158400 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 1   VFDDDFNWKGNENHLQNFIKYKEVFKDLPLNLKGWLVFRNGVAIGFDDSEDLEFEI 57
           V  D+FNWK  ENH +NF+KYKEVF D+ L++KG     +     F D  DL F I
Sbjct: 85  VSKDEFNWKDGENHWENFLKYKEVFGDVELDVKGKRACESESLDVFGDCGDLGFGI 140

[Close]

BLAST of Bhi11M000113 vs. TrEMBL
Match: tr|M5WU19|M5WU19_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa007139mg PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 1   VFDDDFNWKGNENHLQNFIKYKEVFKDLPLNLKGWLVFRNGVAIGFDDSEDLEFEI 57
           V  D+FNWK  ENH +NF+KYKEVF D+ L++KG     +     F D  DL F I
Sbjct: 63  VSKDEFNWKDGENHWENFLKYKEVFGDVELDVKGKRACESESLDVFGDCGDLGFGI 118

[Close]

BLAST of Bhi11M000113 vs. TrEMBL
Match: tr|A0A2H5NUH3|A0A2H5NUH3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_077220 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 1   VFDDDFNWKGNENHLQNFIKYKEVFKDLPLNLKGWLVFRNGVAIGFDDSEDL 53
           + DD+FNWK  ENH +NF+KYKEVF D+ L +KG  V    +   F+D  DL
Sbjct: 85  ISDDEFNWKDGENHWENFLKYKEVFGDVELEVKGKRVSNGDL---FEDCCDL 133

[Close]

BLAST of Bhi11M000113 vs. TrEMBL
Match: tr|A0A1S8ABS0|A0A1S8ABS0_CITLI (Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 1   VFDDDFNWKGNENHLQNFIKYKEVFKDLPLNLKGWLVFRNGVAIGFDDSEDL 53
           + DD+FNWK  ENH +NF+KYKEVF D+ L +KG  V    +   F+D  DL
Sbjct: 85  ISDDEFNWKDGENHWENFLKYKEVFGDVELEVKGKRVSNGDL---FEDCCDL 133

[Close]

BLAST of Bhi11M000113 vs. NCBI nr
Match: XP_022998272.1 (uncharacterized protein KIAA1211 homolog [Cucurbita maxima])

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 70/106 (66.04%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 1   VFDDDFNWKGNENHLQNFIKYKEVFKDLPLNLKG-WLVFRNGVAIGFDDSEDLEFEISVD 60
           V DDDFNWK  ENH QNF+KYKEVF D PL+LKG  LVF N  A+GFD SED EF I VD
Sbjct: 85  VSDDDFNWKDGENHWQNFMKYKEVFGDFPLDLKGKRLVFGNAAAVGFDGSEDSEFGIGVD 144

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXKVDEHGGGHEVVVVVGDEG 106
           XXXXXXXXXXXXXXXXXXXX          + GGG E V  +G+EG
Sbjct: 145 XXXXXXXXXXXXXXXXXXXXGG------AKDDGGGREPVEAIGNEG 184

[Close]

BLAST of Bhi11M000113 vs. NCBI nr
Match: XP_011651431.1 (PREDICTED: uncharacterized protein KIAA1211 homolog [Cucumis sativus] >KGN57887.1 hypothetical protein Csa_3G365940 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 4.5e-13
Identity = 70/106 (66.04%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 1   VFDDDFNWKGNENHLQNFIKYKEVFKDLPLNLKG-WLVFRNGVAIGFDDSEDLEFEISVD 60
           V DDDFNWK  ENH QNF+KYK+VF DLPL+LKG  LVF NG A+ FD SEDLEF     
Sbjct: 85  VSDDDFNWKDGENHWQNFMKYKQVFGDLPLDLKGKRLVFGNGAAVDFDGSEDLEF---XX 144

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXKVDEHGGGHEVVVVVGDEG 106
           XXXXXXXXXXXXXXXXXXX        K   H GG +VV VVG+EG
Sbjct: 145 XXXXXXXXXXXXXXXXXXXKGREHGRRKHPGHRGGPQVVEVVGNEG 187

[Close]

BLAST of Bhi11M000113 vs. NCBI nr
Match: XP_022143404.1 (uncharacterized protein LOC111013283, partial [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 2.7e-10
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 3   DDDFNWKGNENHLQNFIKYKEVFKDLPLNLKGWLVFRNGVAIGFDDSEDLEFEISVD 60
           D  FNWK  ENH QNFIKYKEVF DLPL++KG  +F N    GFD SEDLEF I VD
Sbjct: 87  DHHFNWKDAENHWQNFIKYKEVFGDLPLDVKGKRLFGN----GFDGSEDLEFGIGVD 139

[Close]

BLAST of Bhi11M000113 vs. NCBI nr
Match: KDO63115.1 (hypothetical protein CISIN_1g043495mg [Citrus sinensis])

HSP 1 Score: 54.3 bits (129), Expect = 2.9e-04
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 1   VFDDDFNWKGNENHLQNFIKYKEVFKDLPLNLKGWLVFRNGVAIGFDDSEDL 53
           + DD+FNWK  ENH +NF+KYKEVF D+ L +KG  V    +   F+D  DL
Sbjct: 85  ISDDEFNWKDGENHWENFLKYKEVFGDVELEVKGKRVSNGDL---FEDCCDL 133

[Close]

BLAST of Bhi11M000113 vs. NCBI nr
Match: GAY43786.1 (hypothetical protein CUMW_077220 [Citrus unshiu])

HSP 1 Score: 54.3 bits (129), Expect = 2.9e-04
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 1   VFDDDFNWKGNENHLQNFIKYKEVFKDLPLNLKGWLVFRNGVAIGFDDSEDL 53
           + DD+FNWK  ENH +NF+KYKEVF D+ L +KG  V    +   F+D  DL
Sbjct: 85  ISDDEFNWKDGENHWENFLKYKEVFGDVELEVKGKRVSNGDL---FEDCCDL 133

The following BLAST results are available for this feature:

BLAST of Bhi11M000113 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi11M000113 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi11M000113 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LB45\|A0A0A0LB45_CUCSA	3.0e-13	66.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G365940 PE=4 SV=1	[more]
tr\|A0A251Q0Q8\|A0A251Q0Q8_PRUPE	1.9e-04	48.21	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G158400 PE=4 SV=1	[more]
tr\|M5WU19\|M5WU19_PRUPE	1.9e-04	48.21	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa007139mg PE=4 SV=1	[more]
tr\|A0A2H5NUH3\|A0A2H5NUH3_CITUN	1.9e-04	50.00	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_077220 PE=4 SV=1	[more]
tr\|A0A1S8ABS0\|A0A1S8ABS0_CITLI	1.9e-04	50.00	Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1	[more]

BLAST of Bhi11M000113 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022998272.1	1.2e-13	66.04	uncharacterized protein KIAA1211 homolog [Cucurbita maxima]	[more]
XP_011651431.1	4.5e-13	66.04	PREDICTED: uncharacterized protein KIAA1211 homolog [Cucumis sativus] >KGN57887....	[more]
XP_022143404.1	2.7e-10	66.67	uncharacterized protein LOC111013283, partial [Momordica charantia]	[more]
KDO63115.1	2.9e-04	50.00	hypothetical protein CISIN_1g043495mg [Citrus sinensis]	[more]
GAY43786.1	2.9e-04	50.00	hypothetical protein CUMW_077220 [Citrus unshiu]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi11G000113	Bhi11G000113	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi11M000113.exon1	Bhi11M000113.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi11M000113	cds.Bhi11M000113	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi11M000113	Bhi11M000113-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..72
None	No IPR available	PANTHER	PTHR37076:SF2	SUBFAMILY NOT NAMED	coord: 3..85
None	No IPR available	PANTHER	PTHR37076	FAMILY NOT NAMED	coord: 3..85