Bhi11M000060 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11M000060
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Retrovirus-related pol polyprotein from transposon tnt 1-94
Location	chr11 : 1746542 .. 1746879 (+)
Sequence length	338

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Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAGAAGGAGGCCACCAAAAGTATTGAACAATATTTCAGGAAAGTCAAAATTTTGGTTGATCGACTTGCCGCTACCAGTGTAAAAATCGATGATGAAGAAACTCTCTTGCATATTCTTAATAGCCTACTGGTAGAGTTCAATGCATTTTATACCTCGATTCGAACATGTGACATAACTCTTTCGCTCGTCGAACTTGAAGTCCTCCTTGATGTCGAAGCAAAGACGATCGACGCTCTTCAATCAATTGTTAAACCGATCCCCACAGCGATGGTCGTCTTCCAGCAGTCTGGTCACGATGCTGGTCGAGGAACTTTGGGCAGATTTTCTAGTGGGTGA

mRNA sequence

TCAAGAAGGAGGCCACCAAAAGTATTGAACAATATTTCAGGAAAGTCAAAATTTTGGTTGATCGACTTGCCGCTACCAGTGTAAAAATCGATGATGAAGAAACTCTCTTGCATATTCTTAATAGCCTACTGGTAGAGTTCAATGCATTTTATACCTCGATTCGAACATGTGACATAACTCTTTCGCTCGTCGAACTTGAAGTCCTCCTTGATGTCGAAGCAAAGACGATCGACGCTCTTCAATCAATTGTTAAACCGATCCCCACAGCGATGGTCGTCTTCCAGCAGTCTGGTCACGATGCTGGTCGAGGAACTTTGGGCAGATTTTCTAGTGGGTGA

Coding sequence (CDS)

TCAAGAAGGAGGCCACCAAAAGTATTGAACAATATTTCAGGAAAGTCAAAATTTTGGTTGATCGACTTGCCGCTACCAGTGTAAAAATCGATGATGAAGAAACTCTCTTGCATATTCTTAATAGCCTACTGGTAGAGTTCAATGCATTTTATACCTCGATTCGAACATGTGACATAACTCTTTCGCTCGTCGAACTTGAAGTCCTCCTTGATGTCGAAGCAAAGACGATCGACGCTCTTCAATCAATTGTTAAACCGATCCCCACAGCGATGGTCGTCTTCCAGCAGTCTGGTCACGATGCTGGTCGAGGAACTTTGGGCAGATTTTCTAGTGGGTGA

Protein sequence

KKEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITLSLVELEVLLDVEAKTIDALQSIVKPIPTAMVVFQQSGHDAGRGTLGRFSSG

Homology

[Close]

BLAST of Bhi11M000060 vs. TrEMBL
Match: tr|A0A1S4E394|A0A1S4E394_CUCME (uncharacterized protein LOC107991825 OS=Cucumis melo OX=3656 GN=LOC107991825 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.8e-14
Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 1   KKEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITL 60
           KK  ++SI+QY  ++K LVD+L A SV ++DEE L+H LN L   FNAF TSIRT +  +
Sbjct: 45  KKNPSESIDQYTSRIKALVDKLDAASVSLEDEEILVHTLNGLPAAFNAFRTSIRTRNGNI 104

Query: 61  SLVELEVLLDVEAKTIDALQSIVKPIPTAMVVFQQSGHDAGRGTLGRFSS 111
           SL EL  LL +  +TI A  S ++ IPTAM  F    H   RG   RF S
Sbjct: 105 SLEELHTLL-ISEETIMAKTSAIEAIPTAMAAFHPPQHHGSRGRGRRFHS 153

[Close]

BLAST of Bhi11M000060 vs. TrEMBL
Match: tr|E5GBM9|E5GBM9_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-12
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 7   SIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITLSLVELE 66
           SI+QY  ++K LVD+LA  SV ++DEE L+H LN L   FN F+TSIRT    +SL EL 
Sbjct: 9   SIDQYTSRIKALVDKLAVASVSLEDEEILVHTLNGLPAAFNTFHTSIRTRSGNISLEELH 68

Query: 67  VLLDVEAKTIDALQSIVKPIPTAMVVFQQSGHDAGRGTLGRFSS 111
            LL +  +T  A    ++ IPTAM  F  + H   RG   RF S
Sbjct: 69  TLL-ISEETTMAKTPAIEAIPTAMAAFHPTQHHDNRGRGRRFHS 111

[Close]

BLAST of Bhi11M000060 vs. TrEMBL
Match: tr|A0A1S4E4S1|A0A1S4E4S1_CUCME (uncharacterized protein LOC107991968 OS=Cucumis melo OX=3656 GN=LOC107991968 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 1   KKEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITL 60
           KK  ++SI+QY  ++K  VD+LAA S+ +++E  L+H LN L   F+AF TSIRT    +
Sbjct: 145 KKTPSESIDQYTSRIKAFVDKLAAASISLENEGILVHTLNGLPAAFHAFRTSIRTRSGNI 204

Query: 61  SLVELEVLLDVEAKTIDALQSIVKPIPTAMVVF 94
           SL EL  LL +  +T     S ++ IPTAM  F
Sbjct: 205 SLEELHTLL-ISEETTMTKASAIEAIPTAMAAF 236

[Close]

BLAST of Bhi11M000060 vs. TrEMBL
Match: tr|A0A2P4LVC7|A0A2P4LVC7_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_18094 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.2e-08
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 0


Query: 2   KEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITLS 61
           K+ T +I+ YF+K+K + DRLAA SV +DDEE L   L+ L  EF++F ++IRT    LS
Sbjct: 152 KKGTDTIDAYFQKIKQIRDRLAAVSVFLDDEELLHIALDGLPSEFDSFSSAIRTRSDVLS 211

Query: 62  LVELEVLLDVEAKTIDALQSIVKPIPTAMVV-FQQSGHDAGRGTLGRF 109
           + EL  LL+ E + I     +V     AM   F   G   GRG    F
Sbjct: 212 VEELNTLLNAEERAIKKKTHVVDAATMAMAANFHPQGFPRGRGRGNNF 259

[Close]

BLAST of Bhi11M000060 vs. TrEMBL
Match: tr|A0A2P4H6N8|A0A2P4H6N8_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_63831 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 2   KEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITLS 61
           K+  +SI+ YF+K+K   D+LAA SV +DDEE L  +L+ L   +++F ++IRT    LS
Sbjct: 156 KKGNESIDSYFQKIKQACDKLAAVSVFVDDEELLHIVLDGLPSNYDSFSSAIRTRSDVLS 215

Query: 62  LVELEVLLDVEAKTIDALQSIVKPIPTAMVV-FQQSGHDAGRG 104
           + EL  LL+ E + I    + V  +  AM   F   G   GRG
Sbjct: 216 VEELNALLNAEERIIKKRSNSVDQVSMAMAANFHSQGFPRGRG 258

[Close]

BLAST of Bhi11M000060 vs. NCBI nr
Match: XP_016902697.1 (PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 4.3e-14
Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 1   KKEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITL 60
           KK  ++SI+QY  ++K LVD+L A SV ++DEE L+H LN L   FNAF TSIRT +  +
Sbjct: 45  KKNPSESIDQYTSRIKALVDKLDAASVSLEDEEILVHTLNGLPAAFNAFRTSIRTRNGNI 104

Query: 61  SLVELEVLLDVEAKTIDALQSIVKPIPTAMVVFQQSGHDAGRGTLGRFSS 111
           SL EL  LL +  +TI A  S ++ IPTAM  F    H   RG   RF S
Sbjct: 105 SLEELHTLL-ISEETIMAKTSAIEAIPTAMAAFHPPQHHGSRGRGRRFHS 153

[Close]

BLAST of Bhi11M000060 vs. NCBI nr
Match: ADN33871.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 80.5 bits (197), Expect = 4.0e-12
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 7   SIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITLSLVELE 66
           SI+QY  ++K LVD+LA  SV ++DEE L+H LN L   FN F+TSIRT    +SL EL 
Sbjct: 9   SIDQYTSRIKALVDKLAVASVSLEDEEILVHTLNGLPAAFNTFHTSIRTRSGNISLEELH 68

Query: 67  VLLDVEAKTIDALQSIVKPIPTAMVVFQQSGHDAGRGTLGRFSS 111
            LL +  +T  A    ++ IPTAM  F  + H   RG   RF S
Sbjct: 69  TLL-ISEETTMAKTPAIEAIPTAMAAFHPTQHHDNRGRGRRFHS 111

[Close]

BLAST of Bhi11M000060 vs. NCBI nr
Match: XP_016902970.1 (PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 1   KKEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITL 60
           KK  ++SI+QY  ++K  VD+LAA S+ +++E  L+H LN L   F+AF TSIRT    +
Sbjct: 145 KKTPSESIDQYTSRIKAFVDKLAAASISLENEGILVHTLNGLPAAFHAFRTSIRTRSGNI 204

Query: 61  SLVELEVLLDVEAKTIDALQSIVKPIPTAMVVF 94
           SL EL  LL +  +T     S ++ IPTAM  F
Sbjct: 205 SLEELHTLL-ISEETTMTKASAIEAIPTAMAAF 236

[Close]

BLAST of Bhi11M000060 vs. NCBI nr
Match: POF09221.1 (hypothetical protein CFP56_18094 [Quercus suber])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 0


Query: 2   KEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITLS 61
           K+ T +I+ YF+K+K + DRLAA SV +DDEE L   L+ L  EF++F ++IRT    LS
Sbjct: 152 KKGTDTIDAYFQKIKQIRDRLAAVSVFLDDEELLHIALDGLPSEFDSFSSAIRTRSDVLS 211

Query: 62  LVELEVLLDVEAKTIDALQSIVKPIPTAMVV-FQQSGHDAGRGTLGRF 109
           + EL  LL+ E + I     +V     AM   F   G   GRG    F
Sbjct: 212 VEELNTLLNAEERAIKKKTHVVDAATMAMAANFHPQGFPRGRGRGNNF 259

[Close]

BLAST of Bhi11M000060 vs. NCBI nr
Match: POE51926.1 (hypothetical protein CFP56_63831 [Quercus suber])

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 2   KEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITLS 61
           K+  +SI+ YF+K+K   D+LAA SV +DDEE L  +L+ L   +++F ++IRT    LS
Sbjct: 156 KKGNESIDSYFQKIKQACDKLAAVSVFVDDEELLHIVLDGLPSNYDSFSSAIRTRSDVLS 215

Query: 62  LVELEVLLDVEAKTIDALQSIVKPIPTAMVV-FQQSGHDAGRG 104
           + EL  LL+ E + I    + V  +  AM   F   G   GRG
Sbjct: 216 VEELNALLNAEERIIKKRSNSVDQVSMAMAANFHSQGFPRGRG 258

The following BLAST results are available for this feature:

BLAST of Bhi11M000060 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi11M000060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi11M000060 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E394\|A0A1S4E394_CUCME	2.8e-14	48.18	uncharacterized protein LOC107991825 OS=Cucumis melo OX=3656 GN=LOC107991825 PE=...	[more]
tr\|E5GBM9\|E5GBM9_CUCME	2.6e-12	46.15	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4E4S1\|A0A1S4E4S1_CUCME	1.0e-08	44.09	uncharacterized protein LOC107991968 OS=Cucumis melo OX=3656 GN=LOC107991968 PE=...	[more]
tr\|A0A2P4LVC7\|A0A2P4LVC7_QUESU	5.2e-08	40.74	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_18094 PE=4 SV=1	[more]
tr\|A0A2P4H6N8\|A0A2P4H6N8_QUESU	2.6e-07	38.83	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_63831 PE=4 SV=1	[more]

BLAST of Bhi11M000060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902697.1	4.3e-14	48.18	PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo]	[more]
ADN33871.1	4.0e-12	46.15	retrotransposon protein [Cucumis melo subsp. melo]	[more]
XP_016902970.1	1.6e-08	44.09	PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo]	[more]
POF09221.1	7.8e-08	40.74	hypothetical protein CFP56_18094 [Quercus suber]	[more]
POE51926.1	3.9e-07	38.83	hypothetical protein CFP56_63831 [Quercus suber]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi11G000060	Bhi11G000060	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi11M000060.exon1	Bhi11M000060.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi11M000060	cds.Bhi11M000060	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi11M000060	Bhi11M000060-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..66 e-value: 3.3E-9 score: 36.4