Bhi11G000060 (gene) Wax gourd

Overview
NameBhi11G000060
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRetrovirus-related pol polyprotein from transposon tnt 1-94
Locationchr11 : 1746542 .. 1746879 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAGAAGGAGGCCACCAAAAGTATTGAACAATATTTCAGGAAAGTCAAAATTTTGGTTGATCGACTTGCCGCTACCAGTGTAAAAATCGATGATGAAGAAACTCTCTTGCATATTCTTAATAGCCTACTGGTAGAGTTCAATGCATTTTATACCTCGATTCGAACATGTGACATAACTCTTTCGCTCGTCGAACTTGAAGTCCTCCTTGATGTCGAAGCAAAGACGATCGACGCTCTTCAATCAATTGTTAAACCGATCCCCACAGCGATGGTCGTCTTCCAGCAGTCTGGTCACGATGCTGGTCGAGGAACTTTGGGCAGATTTTCTAGTGGGTGA

mRNA sequence

TCAAGAAGGAGGCCACCAAAAGTATTGAACAATATTTCAGGAAAGTCAAAATTTTGGTTGATCGACTTGCCGCTACCAGTGTAAAAATCGATGATGAAGAAACTCTCTTGCATATTCTTAATAGCCTACTGGTAGAGTTCAATGCATTTTATACCTCGATTCGAACATGTGACATAACTCTTTCGCTCGTCGAACTTGAAGTCCTCCTTGATGTCGAAGCAAAGACGATCGACGCTCTTCAATCAATTGTTAAACCGATCCCCACAGCGATGGTCGTCTTCCAGCAGTCTGGTCACGATGCTGGTCGAGGAACTTTGGGCAGATTTTCTAGTGGGTGA

Coding sequence (CDS)

TCAAGAAGGAGGCCACCAAAAGTATTGAACAATATTTCAGGAAAGTCAAAATTTTGGTTGATCGACTTGCCGCTACCAGTGTAAAAATCGATGATGAAGAAACTCTCTTGCATATTCTTAATAGCCTACTGGTAGAGTTCAATGCATTTTATACCTCGATTCGAACATGTGACATAACTCTTTCGCTCGTCGAACTTGAAGTCCTCCTTGATGTCGAAGCAAAGACGATCGACGCTCTTCAATCAATTGTTAAACCGATCCCCACAGCGATGGTCGTCTTCCAGCAGTCTGGTCACGATGCTGGTCGAGGAACTTTGGGCAGATTTTCTAGTGGGTGA

Protein sequence

KKEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITLSLVELEVLLDVEAKTIDALQSIVKPIPTAMVVFQQSGHDAGRGTLGRFSSG
Homology
[Close]
BLAST of Bhi11G000060 vs. TrEMBL
Match: tr|A0A1S4E394|A0A1S4E394_CUCME (uncharacterized protein LOC107991825 OS=Cucumis melo OX=3656 GN=LOC107991825 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.8e-14
Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 0 

Query: 1   KKEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITL 60
           KK  ++SI+QY  ++K LVD+L A SV ++DEE L+H LN L   FNAF TSIRT +  +
Sbjct: 45  KKNPSESIDQYTSRIKALVDKLDAASVSLEDEEILVHTLNGLPAAFNAFRTSIRTRNGNI 104

Query: 61  SLVELEVLLDVEAKTIDALQSIVKPIPTAMVVFQQSGHDAGRGTLGRFSS 111
           SL EL  LL +  +TI A  S ++ IPTAM  F    H   RG   RF S
Sbjct: 105 SLEELHTLL-ISEETIMAKTSAIEAIPTAMAAFHPPQHHGSRGRGRRFHS 153

[Close]
BLAST of Bhi11G000060 vs. TrEMBL
Match: tr|E5GBM9|E5GBM9_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-12
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 0 

Query: 7   SIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITLSLVELE 66
           SI+QY  ++K LVD+LA  SV ++DEE L+H LN L   FN F+TSIRT    +SL EL 
Sbjct: 9   SIDQYTSRIKALVDKLAVASVSLEDEEILVHTLNGLPAAFNTFHTSIRTRSGNISLEELH 68

Query: 67  VLLDVEAKTIDALQSIVKPIPTAMVVFQQSGHDAGRGTLGRFSS 111
            LL +  +T  A    ++ IPTAM  F  + H   RG   RF S
Sbjct: 69  TLL-ISEETTMAKTPAIEAIPTAMAAFHPTQHHDNRGRGRRFHS 111

[Close]
BLAST of Bhi11G000060 vs. TrEMBL
Match: tr|A0A1S4E4S1|A0A1S4E4S1_CUCME (uncharacterized protein LOC107991968 OS=Cucumis melo OX=3656 GN=LOC107991968 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 0 

Query: 1   KKEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITL 60
           KK  ++SI+QY  ++K  VD+LAA S+ +++E  L+H LN L   F+AF TSIRT    +
Sbjct: 145 KKTPSESIDQYTSRIKAFVDKLAAASISLENEGILVHTLNGLPAAFHAFRTSIRTRSGNI 204

Query: 61  SLVELEVLLDVEAKTIDALQSIVKPIPTAMVVF 94
           SL EL  LL +  +T     S ++ IPTAM  F
Sbjct: 205 SLEELHTLL-ISEETTMTKASAIEAIPTAMAAF 236

[Close]
BLAST of Bhi11G000060 vs. TrEMBL
Match: tr|A0A2P4LVC7|A0A2P4LVC7_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_18094 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.2e-08
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 0 

Query: 2   KEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITLS 61
           K+ T +I+ YF+K+K + DRLAA SV +DDEE L   L+ L  EF++F ++IRT    LS
Sbjct: 152 KKGTDTIDAYFQKIKQIRDRLAAVSVFLDDEELLHIALDGLPSEFDSFSSAIRTRSDVLS 211

Query: 62  LVELEVLLDVEAKTIDALQSIVKPIPTAMVV-FQQSGHDAGRGTLGRF 109
           + EL  LL+ E + I     +V     AM   F   G   GRG    F
Sbjct: 212 VEELNTLLNAEERAIKKKTHVVDAATMAMAANFHPQGFPRGRGRGNNF 259

[Close]
BLAST of Bhi11G000060 vs. TrEMBL
Match: tr|A0A2P4H6N8|A0A2P4H6N8_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_63831 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 0 

Query: 2   KEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITLS 61
           K+  +SI+ YF+K+K   D+LAA SV +DDEE L  +L+ L   +++F ++IRT    LS
Sbjct: 156 KKGNESIDSYFQKIKQACDKLAAVSVFVDDEELLHIVLDGLPSNYDSFSSAIRTRSDVLS 215

Query: 62  LVELEVLLDVEAKTIDALQSIVKPIPTAMVV-FQQSGHDAGRG 104
           + EL  LL+ E + I    + V  +  AM   F   G   GRG
Sbjct: 216 VEELNALLNAEERIIKKRSNSVDQVSMAMAANFHSQGFPRGRG 258

[Close]
BLAST of Bhi11G000060 vs. NCBI nr
Match: XP_016902697.1 (PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 4.3e-14
Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 0 

Query: 1   KKEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITL 60
           KK  ++SI+QY  ++K LVD+L A SV ++DEE L+H LN L   FNAF TSIRT +  +
Sbjct: 45  KKNPSESIDQYTSRIKALVDKLDAASVSLEDEEILVHTLNGLPAAFNAFRTSIRTRNGNI 104

Query: 61  SLVELEVLLDVEAKTIDALQSIVKPIPTAMVVFQQSGHDAGRGTLGRFSS 111
           SL EL  LL +  +TI A  S ++ IPTAM  F    H   RG   RF S
Sbjct: 105 SLEELHTLL-ISEETIMAKTSAIEAIPTAMAAFHPPQHHGSRGRGRRFHS 153

[Close]
BLAST of Bhi11G000060 vs. NCBI nr
Match: ADN33871.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 80.5 bits (197), Expect = 4.0e-12
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 0 

Query: 7   SIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITLSLVELE 66
           SI+QY  ++K LVD+LA  SV ++DEE L+H LN L   FN F+TSIRT    +SL EL 
Sbjct: 9   SIDQYTSRIKALVDKLAVASVSLEDEEILVHTLNGLPAAFNTFHTSIRTRSGNISLEELH 68

Query: 67  VLLDVEAKTIDALQSIVKPIPTAMVVFQQSGHDAGRGTLGRFSS 111
            LL +  +T  A    ++ IPTAM  F  + H   RG   RF S
Sbjct: 69  TLL-ISEETTMAKTPAIEAIPTAMAAFHPTQHHDNRGRGRRFHS 111

[Close]
BLAST of Bhi11G000060 vs. NCBI nr
Match: XP_016902970.1 (PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 0 

Query: 1   KKEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITL 60
           KK  ++SI+QY  ++K  VD+LAA S+ +++E  L+H LN L   F+AF TSIRT    +
Sbjct: 145 KKTPSESIDQYTSRIKAFVDKLAAASISLENEGILVHTLNGLPAAFHAFRTSIRTRSGNI 204

Query: 61  SLVELEVLLDVEAKTIDALQSIVKPIPTAMVVF 94
           SL EL  LL +  +T     S ++ IPTAM  F
Sbjct: 205 SLEELHTLL-ISEETTMTKASAIEAIPTAMAAF 236

[Close]
BLAST of Bhi11G000060 vs. NCBI nr
Match: POF09221.1 (hypothetical protein CFP56_18094 [Quercus suber])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 0 

Query: 2   KEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITLS 61
           K+ T +I+ YF+K+K + DRLAA SV +DDEE L   L+ L  EF++F ++IRT    LS
Sbjct: 152 KKGTDTIDAYFQKIKQIRDRLAAVSVFLDDEELLHIALDGLPSEFDSFSSAIRTRSDVLS 211

Query: 62  LVELEVLLDVEAKTIDALQSIVKPIPTAMVV-FQQSGHDAGRGTLGRF 109
           + EL  LL+ E + I     +V     AM   F   G   GRG    F
Sbjct: 212 VEELNTLLNAEERAIKKKTHVVDAATMAMAANFHPQGFPRGRGRGNNF 259

[Close]
BLAST of Bhi11G000060 vs. NCBI nr
Match: POE51926.1 (hypothetical protein CFP56_63831 [Quercus suber])

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 0 

Query: 2   KEATKSIEQYFRKVKILVDRLAATSVKIDDEETLLHILNSLLVEFNAFYTSIRTCDITLS 61
           K+  +SI+ YF+K+K   D+LAA SV +DDEE L  +L+ L   +++F ++IRT    LS
Sbjct: 156 KKGNESIDSYFQKIKQACDKLAAVSVFVDDEELLHIVLDGLPSNYDSFSSAIRTRSDVLS 215

Query: 62  LVELEVLLDVEAKTIDALQSIVKPIPTAMVV-FQQSGHDAGRG 104
           + EL  LL+ E + I    + V  +  AM   F   G   GRG
Sbjct: 216 VEELNALLNAEERIIKKRSNSVDQVSMAMAANFHSQGFPRGRG 258

The following BLAST results are available for this feature:
BLAST of Bhi11G000060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi11G000060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi11G000060 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E394|A0A1S4E394_CUCME2.8e-1448.18uncharacterized protein LOC107991825 OS=Cucumis melo OX=3656 GN=LOC107991825 PE=... [more]
tr|E5GBM9|E5GBM9_CUCME2.6e-1246.15Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4E4S1|A0A1S4E4S1_CUCME1.0e-0844.09uncharacterized protein LOC107991968 OS=Cucumis melo OX=3656 GN=LOC107991968 PE=... [more]
tr|A0A2P4LVC7|A0A2P4LVC7_QUESU5.2e-0840.74Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_18094 PE=4 SV=1[more]
tr|A0A2P4H6N8|A0A2P4H6N8_QUESU2.6e-0738.83Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_63831 PE=4 SV=1[more]
BLAST of Bhi11G000060 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016902697.14.3e-1448.18PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo][more]
ADN33871.14.0e-1246.15retrotransposon protein [Cucumis melo subsp. melo][more]
XP_016902970.11.6e-0844.09PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo][more]
POF09221.17.8e-0840.74hypothetical protein CFP56_18094 [Quercus suber][more]
POE51926.13.9e-0738.83hypothetical protein CFP56_63831 [Quercus suber][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M000060Bhi11M000060mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..66
e-value: 3.3E-9
score: 36.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi11G000060Cucumber (Gy14) v1cgywgoB622
Bhi11G000060Cucumber (Gy14) v1cgywgoB642
Bhi11G000060Cucumber (Gy14) v2cgybwgoB227
Bhi11G000060Cucumber (Gy14) v2cgybwgoB232
Bhi11G000060Cucurbita maxima (Rimu)cmawgoB0420
Bhi11G000060Cucurbita maxima (Rimu)cmawgoB0636
Bhi11G000060Cucurbita maxima (Rimu)cmawgoB0708
Bhi11G000060Cucurbita maxima (Rimu)cmawgoB0977
Bhi11G000060Cucurbita moschata (Rifu)cmowgoB0415
Bhi11G000060Cucurbita moschata (Rifu)cmowgoB0701
Bhi11G000060Cucurbita moschata (Rifu)cmowgoB0973
Bhi11G000060Cucurbita pepo (Zucchini)cpewgoB0277
Bhi11G000060Cucurbita pepo (Zucchini)cpewgoB0908
Bhi11G000060Cucurbita pepo (Zucchini)cpewgoB1090
Bhi11G000060Wild cucumber (PI 183967)cpiwgoB239
Bhi11G000060Wild cucumber (PI 183967)cpiwgoB244
Bhi11G000060Bottle gourd (USVL1VR-Ls)lsiwgoB411
Bhi11G000060Cucumber (Chinese Long) v3cucwgoB242
Bhi11G000060Cucumber (Chinese Long) v3cucwgoB246
Bhi11G000060Cucumber (Chinese Long) v2cuwgoB237
Bhi11G000060Cucumber (Chinese Long) v2cuwgoB242
Bhi11G000060Bottle gourd (USVL1VR-Ls)lsiwgoB539
Bhi11G000060Melon (DHL92) v3.6.1medwgoB379
Bhi11G000060Melon (DHL92) v3.6.1medwgoB508
Bhi11G000060Melon (DHL92) v3.5.1mewgoB378
Bhi11G000060Melon (DHL92) v3.5.1mewgoB498
Bhi11G000060Watermelon (Charleston Gray)wcgwgoB013
Bhi11G000060Watermelon (Charleston Gray)wcgwgoB095
Bhi11G000060Watermelon (97103) v2wgowmbB017
Bhi11G000060Watermelon (97103) v2wgowmbB051
Bhi11G000060Watermelon (97103) v1wgowmB004
Bhi11G000060Watermelon (97103) v1wgowmB027
Bhi11G000060Silver-seed gourdcarwgoB0670
Bhi11G000060Silver-seed gourdcarwgoB0829
Bhi11G000060Silver-seed gourdcarwgoB0909