Bhi10M001751 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10M001751
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr10 : 54765958 .. 54766214 (+)
Sequence length	257

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGAAGAGATTCAGGCAGTGGTGTCATCTTCATCTACATCGTCATCTTCAACAAGTGATGATGATATGTCACCAAGAAGAATGAGAAATATTGAAGAAATTTATAATGTTATTAGCAGAATTGATGATGATGTTATTGATTTTGCATTATTTTTCGGTATTGATCCTTTAAATCTTGATGAGGCGATCCAAGATGAACAATGGAAGATTGCAATGGATCAAGAAATTGATACAATAAAAAGAAATGAAACATGGGA

mRNA sequence

CAAGAAGAGATTCAGGCAGTGGTGTCATCTTCATCTACATCGTCATCTTCAACAAGTGATGATGATATGTCACCAAGAAGAATGAGAAATATTGAAGAAATTTATAATGTTATTAGCAGAATTGATGATGATGTTATTGATTTTGCATTATTTTTCGGTATTGATCCTTTAAATCTTGATGAGGCGATCCAAGATGAACAATGGAAGATTGCAATGGATCAAGAAATTGATACAATAAAAAGAAATGAAACATGGGA

Coding sequence (CDS)

CAAGAAGAGATTCAGGCAGTGGTGTCATCTTCATCTACATCGTCATCTTCAACAAGTGATGATGATATGTCACCAAGAAGAATGAGAAATATTGAAGAAATTTATAATGTTATTAGCAGAATTGATGATGATGTTATTGATTTTGCATTATTTTTCGGTATTGATCCTTTAAATCTTGATGAGGCGATCCAAGATGAACAATGGAAGATTGCAATGGATCAAGAAATTGATACAATAAAAAGAAATGAAACATGGGA

Protein sequence

QEEIQAVVSSSSTSSSSTSDDDMSPRRMRNIEEIYNVISRIDDDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNETW

Homology

[Close]

BLAST of Bhi10M001751 vs. TrEMBL
Match: tr|A6YTD9|A6YTD9_CUCME (Integrase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 25  PRRMRNIEEIYNVISRID-DDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNE 84
           PRRMR+I+EIYN  +RI+ D   +FALF G+ P+  DEAIQDE+WKIAMDQEID I+RNE
Sbjct: 768 PRRMRSIQEIYNNTNRINVDHFANFALFAGVGPVTFDEAIQDEKWKIAMDQEIDAIRRNE 827

Query: 85  TW 86
           TW
Sbjct: 828 TW 829

[Close]

BLAST of Bhi10M001751 vs. TrEMBL
Match: tr|A0A1S4DWL8|A0A1S4DWL8_CUCME (uncharacterized mitochondrial protein AtMg00820-like OS=Cucumis melo OX=3656 GN=LOC107990759 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 28 MRNIEEIYNVISRIDDD-VIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNETW 86
          MR+I+EIYN  +RI+DD   +FALF G+DP+  DEAIQ E+WKIAMDQEID I+RNETW
Sbjct: 1  MRSIQEIYNTTNRINDDHFANFALFAGVDPVTFDEAIQYEKWKIAMDQEIDAIRRNETW 59

[Close]

BLAST of Bhi10M001751 vs. TrEMBL
Match: tr|C0JJI2|C0JJI2_SOYBN (Copia-type polyprotein OS=Glycine max OX=3847 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-07
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 25  PRRMRNIEEIYNVISRIDDDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNET 84
           PRRMRNI+E+Y+    I+D    F LF    PLN DEA++D++W+ AM++EI  I++N T
Sbjct: 500 PRRMRNIQELYDETEVIND---LFCLFVDSKPLNFDEAMKDKRWRQAMEEEIKAIEKNNT 557

Query: 85  W 86
           W
Sbjct: 560 W 557

[Close]

BLAST of Bhi10M001751 vs. TrEMBL
Match: tr|A0A2N9HAI2|A0A2N9HAI2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39269 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-06
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 25  PRRMRNIEEIYNVISRIDDDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNET 84
           PR  R+++++Y     IDD  + F LF   +P    EA+QD++W+ AMD+EI  IK+N+T
Sbjct: 712 PRGFRSLQDLYESTKNIDDITL-FCLFADCEPTGFKEAVQDKKWRNAMDEEIKAIKKNDT 771

Query: 85  W 86
           W
Sbjct: 772 W 771

[Close]

BLAST of Bhi10M001751 vs. TrEMBL
Match: tr|A0A151SQI8|A0A151SQI8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_003299 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.2e-06
Identity = 23/48 (47.92%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 38  ISRIDDDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNETW 86
           ++ ++D +  FALF   DP+  + AI++E+W+IAMD EID+I+RN+TW
Sbjct: 180 VTGVEDTITHFALFSESDPITFESAIKEEKWRIAMDDEIDSIERNDTW 227

[Close]

BLAST of Bhi10M001751 vs. NCBI nr
Match: ABR67407.1 (integrase [Cucumis melo subsp. melo])

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 25  PRRMRNIEEIYNVISRID-DDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNE 84
           PRRMR+I+EIYN  +RI+ D   +FALF G+ P+  DEAIQDE+WKIAMDQEID I+RNE
Sbjct: 768 PRRMRSIQEIYNNTNRINVDHFANFALFAGVGPVTFDEAIQDEKWKIAMDQEIDAIRRNE 827

Query: 85  TW 86
           TW
Sbjct: 828 TW 829

[Close]

BLAST of Bhi10M001751 vs. NCBI nr
Match: XP_016900110.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 28 MRNIEEIYNVISRIDDD-VIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNETW 86
          MR+I+EIYN  +RI+DD   +FALF G+DP+  DEAIQ E+WKIAMDQEID I+RNETW
Sbjct: 1  MRSIQEIYNTTNRINDDHFANFALFAGVDPVTFDEAIQYEKWKIAMDQEIDAIRRNETW 59

[Close]

BLAST of Bhi10M001751 vs. NCBI nr
Match: XP_014619111.1 (cysteine-rich receptor-like protein kinase 2 [Glycine max])

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 25  PRRMRNIEEIYNVISRIDDDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNET 84
           PRRMRNI+E+Y+    I+D    F LF   +PLN DEA++D++W+ AM++EI  I++N T
Sbjct: 644 PRRMRNIQELYDETEVIND---LFCLFVDSEPLNFDEAMKDKRWRQAMEEEIKAIEKNNT 701

Query: 85  W 86
           W
Sbjct: 704 W 701

[Close]

BLAST of Bhi10M001751 vs. NCBI nr
Match: ACN78973.1 (copia-type polyprotein [Glycine max] >ACN78980.1 copia-type polyprotein [Glycine max])

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-07
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 25  PRRMRNIEEIYNVISRIDDDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNET 84
           PRRMRNI+E+Y+    I+D    F LF    PLN DEA++D++W+ AM++EI  I++N T
Sbjct: 500 PRRMRNIQELYDETEVIND---LFCLFVDSKPLNFDEAMKDKRWRQAMEEEIKAIEKNNT 557

Query: 85  W 86
           W
Sbjct: 560 W 557

[Close]

BLAST of Bhi10M001751 vs. NCBI nr
Match: RDX71977.1 (hypothetical protein CR513_48598, partial [Mucuna pruriens])

HSP 1 Score: 60.5 bits (145), Expect = 3.3e-06
Identity = 28/60 (46.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 26  RRMRNIEEIYNVISRIDDDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNETW 85
           ++MR+I+EIY+ I  I+D    F LF   +PL  DEA++D++W+ AM++EI  IK+N+TW
Sbjct: 138 QKMRSIQEIYDEIEIIND---LFCLFVDSEPLTFDEALEDKRWRQAMEEEIKAIKKNDTW 194

The following BLAST results are available for this feature:

BLAST of Bhi10M001751 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10M001751 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10M001751 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A6YTD9\|A6YTD9_CUCME	1.7e-14	67.74	Integrase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4DWL8\|A0A1S4DWL8_CUCME	1.8e-13	67.80	uncharacterized mitochondrial protein AtMg00820-like OS=Cucumis melo OX=3656 GN=...	[more]
tr\|C0JJI2\|C0JJI2_SOYBN	3.3e-07	49.18	Copia-type polyprotein OS=Glycine max OX=3847 PE=4 SV=1	[more]
tr\|A0A2N9HAI2\|A0A2N9HAI2_FAGSY	3.7e-06	42.62	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39269 PE=4 SV=1	[more]
tr\|A0A151SQI8\|A0A151SQI8_CAJCA	8.2e-06	47.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]

BLAST of Bhi10M001751 vs. NCBI nr


Match Name	E-value	Identity	Description
ABR67407.1	2.5e-14	67.74	integrase [Cucumis melo subsp. melo]	[more]
XP_016900110.1	2.8e-13	67.80	PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo]	[more]
XP_014619111.1	2.3e-07	49.18	cysteine-rich receptor-like protein kinase 2 [Glycine max]	[more]
ACN78973.1	5.1e-07	49.18	copia-type polyprotein [Glycine max] >ACN78980.1 copia-type polyprotein [Glycine...	[more]
RDX71977.1	3.3e-06	46.67	hypothetical protein CR513_48598, partial [Mucuna pruriens]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi10G001751	Bhi10G001751	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi10M001751.exon1	Bhi10M001751.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi10M001751	cds.Bhi10M001751	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi10M001751	Bhi10M001751-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21