Bhi10G001751 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G001751
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr10 : 54765958 .. 54766214 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGAAGAGATTCAGGCAGTGGTGTCATCTTCATCTACATCGTCATCTTCAACAAGTGATGATGATATGTCACCAAGAAGAATGAGAAATATTGAAGAAATTTATAATGTTATTAGCAGAATTGATGATGATGTTATTGATTTTGCATTATTTTTCGGTATTGATCCTTTAAATCTTGATGAGGCGATCCAAGATGAACAATGGAAGATTGCAATGGATCAAGAAATTGATACAATAAAAAGAAATGAAACATGGGA

mRNA sequence

CAAGAAGAGATTCAGGCAGTGGTGTCATCTTCATCTACATCGTCATCTTCAACAAGTGATGATGATATGTCACCAAGAAGAATGAGAAATATTGAAGAAATTTATAATGTTATTAGCAGAATTGATGATGATGTTATTGATTTTGCATTATTTTTCGGTATTGATCCTTTAAATCTTGATGAGGCGATCCAAGATGAACAATGGAAGATTGCAATGGATCAAGAAATTGATACAATAAAAAGAAATGAAACATGGGA

Coding sequence (CDS)

CAAGAAGAGATTCAGGCAGTGGTGTCATCTTCATCTACATCGTCATCTTCAACAAGTGATGATGATATGTCACCAAGAAGAATGAGAAATATTGAAGAAATTTATAATGTTATTAGCAGAATTGATGATGATGTTATTGATTTTGCATTATTTTTCGGTATTGATCCTTTAAATCTTGATGAGGCGATCCAAGATGAACAATGGAAGATTGCAATGGATCAAGAAATTGATACAATAAAAAGAAATGAAACATGGGA

Protein sequence

QEEIQAVVSSSSTSSSSTSDDDMSPRRMRNIEEIYNVISRIDDDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNETW

Homology

[Close]

BLAST of Bhi10G001751 vs. TrEMBL
Match: tr|A6YTD9|A6YTD9_CUCME (Integrase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 25  PRRMRNIEEIYNVISRID-DDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNE 84
           PRRMR+I+EIYN  +RI+ D   +FALF G+ P+  DEAIQDE+WKIAMDQEID I+RNE
Sbjct: 768 PRRMRSIQEIYNNTNRINVDHFANFALFAGVGPVTFDEAIQDEKWKIAMDQEIDAIRRNE 827

Query: 85  TW 86
           TW
Sbjct: 828 TW 829

[Close]

BLAST of Bhi10G001751 vs. TrEMBL
Match: tr|A0A1S4DWL8|A0A1S4DWL8_CUCME (uncharacterized mitochondrial protein AtMg00820-like OS=Cucumis melo OX=3656 GN=LOC107990759 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 28 MRNIEEIYNVISRIDDD-VIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNETW 86
          MR+I+EIYN  +RI+DD   +FALF G+DP+  DEAIQ E+WKIAMDQEID I+RNETW
Sbjct: 1  MRSIQEIYNTTNRINDDHFANFALFAGVDPVTFDEAIQYEKWKIAMDQEIDAIRRNETW 59

[Close]

BLAST of Bhi10G001751 vs. TrEMBL
Match: tr|C0JJI2|C0JJI2_SOYBN (Copia-type polyprotein OS=Glycine max OX=3847 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-07
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 25  PRRMRNIEEIYNVISRIDDDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNET 84
           PRRMRNI+E+Y+    I+D    F LF    PLN DEA++D++W+ AM++EI  I++N T
Sbjct: 500 PRRMRNIQELYDETEVIND---LFCLFVDSKPLNFDEAMKDKRWRQAMEEEIKAIEKNNT 557

Query: 85  W 86
           W
Sbjct: 560 W 557

[Close]

BLAST of Bhi10G001751 vs. TrEMBL
Match: tr|A0A2N9HAI2|A0A2N9HAI2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39269 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-06
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 25  PRRMRNIEEIYNVISRIDDDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNET 84
           PR  R+++++Y     IDD  + F LF   +P    EA+QD++W+ AMD+EI  IK+N+T
Sbjct: 712 PRGFRSLQDLYESTKNIDDITL-FCLFADCEPTGFKEAVQDKKWRNAMDEEIKAIKKNDT 771

Query: 85  W 86
           W
Sbjct: 772 W 771

[Close]

BLAST of Bhi10G001751 vs. TrEMBL
Match: tr|A0A151SQI8|A0A151SQI8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_003299 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.2e-06
Identity = 23/48 (47.92%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 38  ISRIDDDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNETW 86
           ++ ++D +  FALF   DP+  + AI++E+W+IAMD EID+I+RN+TW
Sbjct: 180 VTGVEDTITHFALFSESDPITFESAIKEEKWRIAMDDEIDSIERNDTW 227

[Close]

BLAST of Bhi10G001751 vs. NCBI nr
Match: ABR67407.1 (integrase [Cucumis melo subsp. melo])

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 25  PRRMRNIEEIYNVISRID-DDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNE 84
           PRRMR+I+EIYN  +RI+ D   +FALF G+ P+  DEAIQDE+WKIAMDQEID I+RNE
Sbjct: 768 PRRMRSIQEIYNNTNRINVDHFANFALFAGVGPVTFDEAIQDEKWKIAMDQEIDAIRRNE 827

Query: 85  TW 86
           TW
Sbjct: 828 TW 829

[Close]

BLAST of Bhi10G001751 vs. NCBI nr
Match: XP_016900110.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 28 MRNIEEIYNVISRIDDD-VIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNETW 86
          MR+I+EIYN  +RI+DD   +FALF G+DP+  DEAIQ E+WKIAMDQEID I+RNETW
Sbjct: 1  MRSIQEIYNTTNRINDDHFANFALFAGVDPVTFDEAIQYEKWKIAMDQEIDAIRRNETW 59

[Close]

BLAST of Bhi10G001751 vs. NCBI nr
Match: XP_014619111.1 (cysteine-rich receptor-like protein kinase 2 [Glycine max])

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 25  PRRMRNIEEIYNVISRIDDDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNET 84
           PRRMRNI+E+Y+    I+D    F LF   +PLN DEA++D++W+ AM++EI  I++N T
Sbjct: 644 PRRMRNIQELYDETEVIND---LFCLFVDSEPLNFDEAMKDKRWRQAMEEEIKAIEKNNT 701

Query: 85  W 86
           W
Sbjct: 704 W 701

[Close]

BLAST of Bhi10G001751 vs. NCBI nr
Match: ACN78973.1 (copia-type polyprotein [Glycine max] >ACN78980.1 copia-type polyprotein [Glycine max])

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-07
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 25  PRRMRNIEEIYNVISRIDDDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNET 84
           PRRMRNI+E+Y+    I+D    F LF    PLN DEA++D++W+ AM++EI  I++N T
Sbjct: 500 PRRMRNIQELYDETEVIND---LFCLFVDSKPLNFDEAMKDKRWRQAMEEEIKAIEKNNT 557

Query: 85  W 86
           W
Sbjct: 560 W 557

[Close]

BLAST of Bhi10G001751 vs. NCBI nr
Match: RDX71977.1 (hypothetical protein CR513_48598, partial [Mucuna pruriens])

HSP 1 Score: 60.5 bits (145), Expect = 3.3e-06
Identity = 28/60 (46.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 26  RRMRNIEEIYNVISRIDDDVIDFALFFGIDPLNLDEAIQDEQWKIAMDQEIDTIKRNETW 85
           ++MR+I+EIY+ I  I+D    F LF   +PL  DEA++D++W+ AM++EI  IK+N+TW
Sbjct: 138 QKMRSIQEIYDEIEIIND---LFCLFVDSEPLTFDEALEDKRWRQAMEEEIKAIKKNDTW 194

The following BLAST results are available for this feature:

BLAST of Bhi10G001751 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10G001751 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10G001751 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A6YTD9\|A6YTD9_CUCME	1.7e-14	67.74	Integrase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4DWL8\|A0A1S4DWL8_CUCME	1.8e-13	67.80	uncharacterized mitochondrial protein AtMg00820-like OS=Cucumis melo OX=3656 GN=...	[more]
tr\|C0JJI2\|C0JJI2_SOYBN	3.3e-07	49.18	Copia-type polyprotein OS=Glycine max OX=3847 PE=4 SV=1	[more]
tr\|A0A2N9HAI2\|A0A2N9HAI2_FAGSY	3.7e-06	42.62	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39269 PE=4 SV=1	[more]
tr\|A0A151SQI8\|A0A151SQI8_CAJCA	8.2e-06	47.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]

BLAST of Bhi10G001751 vs. NCBI nr


Match Name	E-value	Identity	Description
ABR67407.1	2.5e-14	67.74	integrase [Cucumis melo subsp. melo]	[more]
XP_016900110.1	2.8e-13	67.80	PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo]	[more]
XP_014619111.1	2.3e-07	49.18	cysteine-rich receptor-like protein kinase 2 [Glycine max]	[more]
ACN78973.1	5.1e-07	49.18	copia-type polyprotein [Glycine max] >ACN78980.1 copia-type polyprotein [Glycine...	[more]
RDX71977.1	3.3e-06	46.67	hypothetical protein CR513_48598, partial [Mucuna pruriens]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001751	Bhi10M001751	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G001751	Cucumber (Gy14) v2	cgybwgoB173
Bhi10G001751	Cucurbita maxima (Rimu)	cmawgoB0699
Bhi10G001751	Cucurbita maxima (Rimu)	cmawgoB0762
Bhi10G001751	Cucurbita moschata (Rifu)	cmowgoB0693
Bhi10G001751	Cucurbita moschata (Rifu)	cmowgoB0752
Bhi10G001751	Cucurbita pepo (Zucchini)	cpewgoB0360
Bhi10G001751	Cucurbita pepo (Zucchini)	cpewgoB0956
Bhi10G001751	Wild cucumber (PI 183967)	cpiwgoB172
Bhi10G001751	Wild cucumber (PI 183967)	cpiwgoB177
Bhi10G001751	Cucumber (Chinese Long) v3	cucwgoB184
Bhi10G001751	Cucumber (Chinese Long) v2	cuwgoB175
Bhi10G001751	Cucumber (Chinese Long) v2	cuwgoB181
Bhi10G001751	Bottle gourd (USVL1VR-Ls)	lsiwgoB074
Bhi10G001751	Melon (DHL92) v3.6.1	medwgoB141
Bhi10G001751	Melon (DHL92) v3.5.1	mewgoB138
Bhi10G001751	Watermelon (Charleston Gray)	wcgwgoB052
Bhi10G001751	Watermelon (97103) v2	wgowmbB390
Bhi10G001751	Watermelon (97103) v1	wgowmB353
Bhi10G001751	Silver-seed gourd	carwgoB0930
Bhi10G001751	Silver-seed gourd	carwgoB1240