Bhi10M001284 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10M001284
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	CC-NBS-LRR disease resistance protein
Location	chr10 : 40566379 .. 40566674 (+)
Sequence length	296

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGCATTGTAACAGAAATAGGAAAGTATGTGTTTAAACCAATTGGACATCAACTTGGTTACGTTGTTTTCTACAACAGAAACAAGAAAGAGCTTGAAGAGCAACTTGAAAGTCTTGAGACAATGAAAAGGAATGTGGATCAAAGGGTTGAAGAGGCAAGAAGCAAGGCATATACAATCTCTGAGGAAGTCACAAAGTGGTTGAGCGATGTGGATAACGAAAAGGCAAAATATGATGAACTATCCAATTCCAGCCCACATTGCTTCAACATTGTCCAACGACACCATCTAAGTTGA

mRNA sequence

TAGGCATTGTAACAGAAATAGGAAAGTATGTGTTTAAACCAATTGGACATCAACTTGGTTACGTTGTTTTCTACAACAGAAACAAGAAAGAGCTTGAAGAGCAACTTGAAAGTCTTGAGACAATGAAAAGGAATGTGGATCAAAGGGTTGAAGAGGCAAGAAGCAAGGCATATACAATCTCTGAGGAAGTCACAAAGTGGTTGAGCGATGTGGATAACGAAAAGGCAAAATATGATGAACTATCCAATTCCAGCCCACATTGCTTCAACATTGTCCAACGACACCATCTAAGTTGA

Coding sequence (CDS)

TAGGCATTGTAACAGAAATAGGAAAGTATGTGTTTAAACCAATTGGACATCAACTTGGTTACGTTGTTTTCTACAACAGAAACAAGAAAGAGCTTGAAGAGCAACTTGAAAGTCTTGAGACAATGAAAAGGAATGTGGATCAAAGGGTTGAAGAGGCAAGAAGCAAGGCATATACAATCTCTGAGGAAGTCACAAAGTGGTTGAGCGATGTGGATAACGAAAAGGCAAAATATGATGAACTATCCAATTCCAGCCCACATTGCTTCAACATTGTCCAACGACACCATCTAAGTTGA

Protein sequence

GIVTEIGKYVFKPIGHQLGYVVFYNRNKKELEEQLESLETMKRNVDQRVEEARSKAYTISEEVTKWLSDVDNEKAKYDELSNSSPHCFNIVQRHHLS

Homology

[Close]

BLAST of Bhi10M001284 vs. TrEMBL
Match: tr|A0A0A0K5R3|A0A0A0K5R3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239020 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.8e-26
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 2   IVTEIGKYVFKPIGHQLGYVVFYNRNKKELEEQLESLETMKRNVDQRVEEARSKAYTISE 61
           IVT IGKYV KPIG+QLGY+VFYNRNK E++EQLESLET K+++D RVE+A+SKAYTI  
Sbjct: 12  IVTPIGKYVIKPIGNQLGYIVFYNRNKNEIKEQLESLETTKKDLDLRVEDAKSKAYTIFT 71

Query: 62  EVTKWLSDVDNEKAKYDELSNSSPHCFNIVQRHHLS 98
           +V++WL   D+E  K DEL NS+P C N +QRH LS
Sbjct: 72  KVSEWLVAADDEIKKSDELFNSNPPCLNFLQRHQLS 107

[Close]

BLAST of Bhi10M001284 vs. TrEMBL
Match: tr|A0A0A0LTN4|A0A0A0LTN4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433370 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.2e-26
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 2  IVTEIGKYVFKPIGHQLGYVVFYNRNKKELEEQLESLETMKRNVDQRVEEARSKAYTISE 61
          I+  +     KPIGHQLGY+V YNRNKKEL EQLE+LET K++V+QRVEEA+ K+YTISE
Sbjct: 3  ILVSVIAATIKPIGHQLGYLVCYNRNKKELREQLENLETTKKDVNQRVEEAKGKSYTISE 62

Query: 62 EVTKWLSDVDNEKAKYDELSNSSPHCFNIVQRHHLS 98
          EV+KWL+DVDN    +DELSNS+P CFN+ QR+ LS
Sbjct: 63 EVSKWLADVDN-AITHDELSNSNPSCFNLAQRYQLS 97

[Close]

BLAST of Bhi10M001284 vs. TrEMBL
Match: tr|A0A1S3CHN4|A0A1S3CHN4_CUCME (disease resistance protein At4g27190-like OS=Cucumis melo OX=3656 GN=LOC103501064 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.9e-25
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 2  IVTEIGKYVFKPIGHQLGYVVFYNRNKKELEEQLESLETMKRNVDQRVEEARSKAYTISE 61
          I+  +     KPIGHQLGY+V YNRNKKEL +QLE+LET KR+V+QRV+EA+ K+YTISE
Sbjct: 3  ILVSVIAATIKPIGHQLGYLVCYNRNKKELRDQLENLETTKRDVNQRVQEAKGKSYTISE 62

Query: 62 EVTKWLSDVDNEKAKYDELSNSSPHCFNIVQRHHLS 98
          EV+KWL+DVDN    +DELSNS+P CFN+ +R+ LS
Sbjct: 63 EVSKWLADVDN-AILHDELSNSNPSCFNLARRYQLS 97

[Close]

BLAST of Bhi10M001284 vs. TrEMBL
Match: tr|A0A2P6QS40|A0A2P6QS40_ROSCH (Putative P-loop containing nucleoside triphosphate hydrolase, leucine-rich repeat domain, L OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0397781 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 32/104 (30.77%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 1   GIVTEIGKYVFKPIGHQLGYVVFYNRNKKELEEQLESLETMKRNVDQRVEEARSKAYTIS 60
           GIV +I +Y   P+  Q+GY++ YNRN K+L+ QL  L+  + +V++++++   +   + 
Sbjct: 10  GIVGKIAEYTVAPVARQVGYLIHYNRNLKKLQSQLSDLDATRESVERKIDQEERRGRKVE 69

Query: 61  EEVTKWLSDVDNEKAKYDELSNSSPH-------CFNIVQRHHLS 98
             VT WL DV+    +  ++     H       C N+  RH LS
Sbjct: 70  AFVTNWLKDVNKITGEAKDILKDERHVKCLHGFCPNLKLRHQLS 113

[Close]

BLAST of Bhi10M001284 vs. TrEMBL
Match: tr|A0A2P6QUV2|A0A2P6QUV2_ROSCH (Putative P-loop containing nucleoside triphosphate hydrolase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0408401 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 34/106 (32.08%), Postives = 57/106 (53.77%), Query Frame = 0


Query: 1   GIVTEIGKYVFKPIGHQLGYVVFYNRNKKELEEQLESLETMKRNVDQRVEEARSKAYTIS 60
           GIV +I +Y   P+G Q+GY++FYNRN K L+ QL  L  ++++V+Q++ E +       
Sbjct: 10  GIVAKIAEYTVAPVGRQVGYLIFYNRNLKNLDSQLSDLIAVRQDVEQKIGEEKRNNREAE 69

Query: 61  EEVTKWLSDVDNEKAKYDELSNSSPH---------CFNIVQRHHLS 98
             V+KW+ D  +   + + + N             C N++ RH LS
Sbjct: 70  VHVSKWVIDAKSITKEANNILNEGHKAKVKCLCGLCPNLMLRHKLS 115

[Close]

BLAST of Bhi10M001284 vs. NCBI nr
Match: KGN44289.1 (hypothetical protein Csa_7G239020 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 4.2e-26
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 2   IVTEIGKYVFKPIGHQLGYVVFYNRNKKELEEQLESLETMKRNVDQRVEEARSKAYTISE 61
           IVT IGKYV KPIG+QLGY+VFYNRNK E++EQLESLET K+++D RVE+A+SKAYTI  
Sbjct: 12  IVTPIGKYVIKPIGNQLGYIVFYNRNKNEIKEQLESLETTKKDLDLRVEDAKSKAYTIFT 71

Query: 62  EVTKWLSDVDNEKAKYDELSNSSPHCFNIVQRHHLS 98
           +V++WL   D+E  K DEL NS+P C N +QRH LS
Sbjct: 72  KVSEWLVAADDEIKKSDELFNSNPPCLNFLQRHQLS 107

[Close]

BLAST of Bhi10M001284 vs. NCBI nr
Match: XP_011659043.1 (PREDICTED: probable disease resistance protein At4g27220 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 4.2e-26
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 2   IVTEIGKYVFKPIGHQLGYVVFYNRNKKELEEQLESLETMKRNVDQRVEEARSKAYTISE 61
           IVT IGKYV KPIG+QLGY+VFYNRNK E++EQLESLET K+++D RVE+A+SKAYTI  
Sbjct: 12  IVTPIGKYVIKPIGNQLGYIVFYNRNKNEIKEQLESLETTKKDLDLRVEDAKSKAYTIFT 71

Query: 62  EVTKWLSDVDNEKAKYDELSNSSPHCFNIVQRHHLS 98
           +V++WL   D+E  K DEL NS+P C N +QRH LS
Sbjct: 72  KVSEWLVAADDEIKKSDELFNSNPPCLNFLQRHQLS 107

[Close]

BLAST of Bhi10M001284 vs. NCBI nr
Match: KGN63371.1 (hypothetical protein Csa_2G433370 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 2  IVTEIGKYVFKPIGHQLGYVVFYNRNKKELEEQLESLETMKRNVDQRVEEARSKAYTISE 61
          I+  +     KPIGHQLGY+V YNRNKKEL EQLE+LET K++V+QRVEEA+ K+YTISE
Sbjct: 3  ILVSVIAATIKPIGHQLGYLVCYNRNKKELREQLENLETTKKDVNQRVEEAKGKSYTISE 62

Query: 62 EVTKWLSDVDNEKAKYDELSNSSPHCFNIVQRHHLS 98
          EV+KWL+DVDN    +DELSNS+P CFN+ QR+ LS
Sbjct: 63 EVSKWLADVDN-AITHDELSNSNPSCFNLAQRYQLS 97

[Close]

BLAST of Bhi10M001284 vs. NCBI nr
Match: XP_011650062.1 (PREDICTED: probable disease resistance protein At5g63020 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 2  IVTEIGKYVFKPIGHQLGYVVFYNRNKKELEEQLESLETMKRNVDQRVEEARSKAYTISE 61
          I+  +     KPIGHQLGY+V YNRNKKEL EQLE+LET K++V+QRVEEA+ K+YTISE
Sbjct: 3  ILVSVIAATIKPIGHQLGYLVCYNRNKKELREQLENLETTKKDVNQRVEEAKGKSYTISE 62

Query: 62 EVTKWLSDVDNEKAKYDELSNSSPHCFNIVQRHHLS 98
          EV+KWL+DVDN    +DELSNS+P CFN+ QR+ LS
Sbjct: 63 EVSKWLADVDN-AITHDELSNSNPSCFNLAQRYQLS 97

[Close]

BLAST of Bhi10M001284 vs. NCBI nr
Match: XP_008462777.1 (PREDICTED: disease resistance protein At4g27190-like [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 2  IVTEIGKYVFKPIGHQLGYVVFYNRNKKELEEQLESLETMKRNVDQRVEEARSKAYTISE 61
          I+  +     KPIGHQLGY+V YNRNKKEL +QLE+LET KR+V+QRV+EA+ K+YTISE
Sbjct: 3  ILVSVIAATIKPIGHQLGYLVCYNRNKKELRDQLENLETTKRDVNQRVQEAKGKSYTISE 62

Query: 62 EVTKWLSDVDNEKAKYDELSNSSPHCFNIVQRHHLS 98
          EV+KWL+DVDN    +DELSNS+P CFN+ +R+ LS
Sbjct: 63 EVSKWLADVDN-AILHDELSNSNPSCFNLARRYQLS 97

The following BLAST results are available for this feature:

BLAST of Bhi10M001284 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10M001284 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10M001284 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5R3\|A0A0A0K5R3_CUCSA	2.8e-26	65.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239020 PE=3 SV=1	[more]
tr\|A0A0A0LTN4\|A0A0A0LTN4_CUCSA	8.2e-26	65.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433370 PE=3 SV=1	[more]
tr\|A0A1S3CHN4\|A0A1S3CHN4_CUCME	6.9e-25	63.54	disease resistance protein At4g27190-like OS=Cucumis melo OX=3656 GN=LOC10350106...	[more]
tr\|A0A2P6QS40\|A0A2P6QS40_ROSCH	2.2e-07	30.77	Putative P-loop containing nucleoside triphosphate hydrolase, leucine-rich repea...	[more]
tr\|A0A2P6QUV2\|A0A2P6QUV2_ROSCH	3.8e-07	32.08	Putative P-loop containing nucleoside triphosphate hydrolase OS=Rosa chinensis O...	[more]

BLAST of Bhi10M001284 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44289.1	4.2e-26	65.63	hypothetical protein Csa_7G239020 [Cucumis sativus]	[more]
XP_011659043.1	4.2e-26	65.63	PREDICTED: probable disease resistance protein At4g27220 [Cucumis sativus]	[more]
KGN63371.1	1.2e-25	65.63	hypothetical protein Csa_2G433370 [Cucumis sativus]	[more]
XP_011650062.1	1.2e-25	65.63	PREDICTED: probable disease resistance protein At5g63020 [Cucumis sativus]	[more]
XP_008462777.1	1.0e-24	63.54	PREDICTED: disease resistance protein At4g27190-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0043531	ADP binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi10G001284	Bhi10G001284	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi10M001284.exon1	Bhi10M001284.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi10M001284	cds.Bhi10M001284	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi10M001284	Bhi10M001284-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 21..55
None	No IPR available	PANTHER	PTHR44116	FAMILY NOT NAMED	coord: 2..91