Bhi10M001270 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10M001270
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Zf-CCHC domain-containing protein
Location	chr10 : 39793472 .. 39794014 (-)
Sequence length	543

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGATTAGTTTTGGAAGATGGAAACTGTTCAAGATCTGAATCCCAAATCTCAGAACAACAAGAACCAATCACAAACCTTACAGAAATAAACATCTTCAATCTACGTTGTAAGAGCCTTGGAGATTTTAATTGGTATAAGCACACGTTTCTAAGTAATTTGTTCATACGGGAAGACTGCAGAGAATCTGTGTGGAAAGAGCGATTTGTAGGACTTCCAGAATTGTTTGCGGAAAGAATATTTTTGAAACTGGAGACACATCAGTCTCAGGGTGGTTCAATTCCATTTGATTCAATGACTTATGGAGATCTTTCAAGTGTTATTGTGGATGAAATTCACAAATTATGCCTTGAAGTCAAAATCCAAAACAATATGCATCAAATCTTAGGAGTTCCAAAGGAAGAATTACAATTCGTAGAATGTTTATGTGAAAGATTTGATGATATGGTCCCTCCCATCTCAGAGAAAGAAGAAGGTGATCAGCAGATACAAATCCTAAAAGGAGAAGAAATATTAGTTGTGTTTGCTTTTAATTATTAG

mRNA sequence

ATGTCAAGATTAGTTTTGGAAGATGGAAACTGTTCAAGATCTGAATCCCAAATCTCAGAACAACAAGAACCAATCACAAACCTTACAGAAATAAACATCTTCAATCTACGTTGTAAGAGCCTTGGAGATTTTAATTGGTATAAGCACACGTTTCTAAGTAATTTGTTCATACGGGAAGACTGCAGAGAATCTGTGTGGAAAGAGCGATTTGTAGGACTTCCAGAATTGTTTGCGGAAAGAATATTTTTGAAACTGGAGACACATCAGTCTCAGGGTGGTTCAATTCCATTTGATTCAATGACTTATGGAGATCTTTCAAGTGTTATTGTGGATGAAATTCACAAATTATGCCTTGAAGTCAAAATCCAAAACAATATGCATCAAATCTTAGGAGTTCCAAAGGAAGAATTACAATTCGTAGAATGTTTATGTGAAAGATTTGATGATATGGTCCCTCCCATCTCAGAGAAAGAAGAAGGTGATCAGCAGATACAAATCCTAAAAGGAGAAGAAATATTAGTTGTGTTTGCTTTTAATTATTAG

Coding sequence (CDS)

ATGTCAAGATTAGTTTTGGAAGATGGAAACTGTTCAAGATCTGAATCCCAAATCTCAGAACAACAAGAACCAATCACAAACCTTACAGAAATAAACATCTTCAATCTACGTTGTAAGAGCCTTGGAGATTTTAATTGGTATAAGCACACGTTTCTAAGTAATTTGTTCATACGGGAAGACTGCAGAGAATCTGTGTGGAAAGAGCGATTTGTAGGACTTCCAGAATTGTTTGCGGAAAGAATATTTTTGAAACTGGAGACACATCAGTCTCAGGGTGGTTCAATTCCATTTGATTCAATGACTTATGGAGATCTTTCAAGTGTTATTGTGGATGAAATTCACAAATTATGCCTTGAAGTCAAAATCCAAAACAATATGCATCAAATCTTAGGAGTTCCAAAGGAAGAATTACAATTCGTAGAATGTTTATGTGAAAGATTTGATGATATGGTCCCTCCCATCTCAGAGAAAGAAGAAGGTGATCAGCAGATACAAATCCTAAAAGGAGAAGAAATATTAGTTGTGTTTGCTTTTAATTATTAG

Protein sequence

MSRLVLEDGNCSRSESQISEQQEPITNLTEINIFNLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFVGLPELFAERIFLKLETHQSQGGSIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERFDDMVPPISEKEEGDQQIQILKGEEILVVFAFNY

Homology

[Close]

BLAST of Bhi10M001270 vs. TrEMBL
Match: tr|A5AFI5|A5AFI5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042359 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.1e-19
Identity = 50/143 (34.97%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 658 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 717

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 718 QIPYDKLTYGEIISIVTAEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 777

Query: 155 MVPPISEKEEGDQQIQILKGEEI 173
            +PP  +K   + +  +   ++I
Sbjct: 778 TMPPSKQKPNSESRTDLDNEDDI 795

[Close]

BLAST of Bhi10M001270 vs. TrEMBL
Match: tr|A5ANM4|A5ANM4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008013 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 672 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 731

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 732 QIPYDKLTYGEIISIVTAEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 791

Query: 155 MVPPISEK 158
            +PP  +K
Sbjct: 792 TIPPSKQK 794

[Close]

BLAST of Bhi10M001270 vs. TrEMBL
Match: tr|A5AWY3|A5AWY3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043898 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-18
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 672 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 731

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 732 QIPYDKLTYGEIISIVTGEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 791

Query: 155 MVPPISEKEEGDQ 163
            +PP  +K    +
Sbjct: 792 TMPPSKQKPSNSE 799

[Close]

BLAST of Bhi10M001270 vs. TrEMBL
Match: tr|A5BNN5|A5BNN5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_021290 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-18
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 495 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 554

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 555 QIPYDKLTYGEIISIVTGEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 614

Query: 155 MVPPISEK 158
            +PP  +K
Sbjct: 615 TMPPSKQK 617

[Close]

BLAST of Bhi10M001270 vs. TrEMBL
Match: tr|A5BKX9|A5BKX9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018354 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-18
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 460 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 519

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 520 QIPYDKLTYGEIISIVTGEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 579

Query: 155 MVPPISEK 158
            +PP  +K
Sbjct: 580 TMPPSKQK 582

[Close]

BLAST of Bhi10M001270 vs. NCBI nr
Match: CAN80018.1 (hypothetical protein VITISV_042359 [Vitis vinifera])

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 50/143 (34.97%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 658 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 717

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 718 QIPYDKLTYGEIISIVTAEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 777

Query: 155 MVPPISEKEEGDQQIQILKGEEI 173
            +PP  +K   + +  +   ++I
Sbjct: 778 TMPPSKQKPNSESRTDLDNEDDI 795

[Close]

BLAST of Bhi10M001270 vs. NCBI nr
Match: CAN82391.1 (hypothetical protein VITISV_008013 [Vitis vinifera])

HSP 1 Score: 102.1 bits (253), Expect = 2.1e-18
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 672 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 731

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 732 QIPYDKLTYGEIISIVTAEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 791

Query: 155 MVPPISEK 158
            +PP  +K
Sbjct: 792 TIPPSKQK 794

[Close]

BLAST of Bhi10M001270 vs. NCBI nr
Match: CAN67571.1 (hypothetical protein VITISV_036869 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 672 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 731

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 732 QIPYDKLTYGEIISIVTGEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 791

Query: 155 MVPPISEK 158
            +PP  +K
Sbjct: 792 TMPPSKQK 794

[Close]

BLAST of Bhi10M001270 vs. NCBI nr
Match: CAN67572.1 (hypothetical protein VITISV_036870 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 431 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 490

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 491 QIPYDKLTYGEIISIVTGEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 550

Query: 155 MVPPISEK 158
            +PP  +K
Sbjct: 551 TMPPSKQK 553

[Close]

BLAST of Bhi10M001270 vs. NCBI nr
Match: CAN76138.1 (hypothetical protein VITISV_043898 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 672 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 731

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 732 QIPYDKLTYGEIISIVTGEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 791

Query: 155 MVPPISEKEEGDQ 163
            +PP  +K    +
Sbjct: 792 TMPPSKQKPSNSE 799

The following BLAST results are available for this feature:

BLAST of Bhi10M001270 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10M001270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10M001270 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A5AFI5\|A5AFI5_VITVI	8.1e-19	34.97	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042359 PE=4 SV=1	[more]
tr\|A5ANM4\|A5ANM4_VITVI	1.4e-18	38.28	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008013 PE=4 SV=1	[more]
tr\|A5AWY3\|A5AWY3_VITVI	1.8e-18	36.84	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043898 PE=4 SV=1	[more]
tr\|A5BNN5\|A5BNN5_VITVI	1.8e-18	38.28	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_021290 PE=4 SV=1	[more]
tr\|A5BKX9\|A5BKX9_VITVI	1.8e-18	38.28	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018354 PE=4 SV=1	[more]

BLAST of Bhi10M001270 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN80018.1	1.2e-18	34.97	hypothetical protein VITISV_042359 [Vitis vinifera]	[more]
CAN82391.1	2.1e-18	38.28	hypothetical protein VITISV_008013 [Vitis vinifera]	[more]
CAN67571.1	2.7e-18	38.28	hypothetical protein VITISV_036869 [Vitis vinifera]	[more]
CAN67572.1	2.7e-18	38.28	hypothetical protein VITISV_036870 [Vitis vinifera]	[more]
CAN76138.1	2.7e-18	36.84	hypothetical protein VITISV_043898 [Vitis vinifera]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi10G001270	Bhi10G001270	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi10M001270	cds.Bhi10M001270	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi10M001270.exon1	Bhi10M001270.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi10M001270	Bhi10M001270-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33054:SF8	SUBFAMILY NOT NAMED	coord: 33..164
None	No IPR available	PANTHER	PTHR33054	FAMILY NOT NAMED	coord: 33..164