Bhi10G001270 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G001270
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Zf-CCHC domain-containing protein
Location	chr10 : 39793472 .. 39794014 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGATTAGTTTTGGAAGATGGAAACTGTTCAAGATCTGAATCCCAAATCTCAGAACAACAAGAACCAATCACAAACCTTACAGAAATAAACATCTTCAATCTACGTTGTAAGAGCCTTGGAGATTTTAATTGGTATAAGCACACGTTTCTAAGTAATTTGTTCATACGGGAAGACTGCAGAGAATCTGTGTGGAAAGAGCGATTTGTAGGACTTCCAGAATTGTTTGCGGAAAGAATATTTTTGAAACTGGAGACACATCAGTCTCAGGGTGGTTCAATTCCATTTGATTCAATGACTTATGGAGATCTTTCAAGTGTTATTGTGGATGAAATTCACAAATTATGCCTTGAAGTCAAAATCCAAAACAATATGCATCAAATCTTAGGAGTTCCAAAGGAAGAATTACAATTCGTAGAATGTTTATGTGAAAGATTTGATGATATGGTCCCTCCCATCTCAGAGAAAGAAGAAGGTGATCAGCAGATACAAATCCTAAAAGGAGAAGAAATATTAGTTGTGTTTGCTTTTAATTATTAG

mRNA sequence

ATGTCAAGATTAGTTTTGGAAGATGGAAACTGTTCAAGATCTGAATCCCAAATCTCAGAACAACAAGAACCAATCACAAACCTTACAGAAATAAACATCTTCAATCTACGTTGTAAGAGCCTTGGAGATTTTAATTGGTATAAGCACACGTTTCTAAGTAATTTGTTCATACGGGAAGACTGCAGAGAATCTGTGTGGAAAGAGCGATTTGTAGGACTTCCAGAATTGTTTGCGGAAAGAATATTTTTGAAACTGGAGACACATCAGTCTCAGGGTGGTTCAATTCCATTTGATTCAATGACTTATGGAGATCTTTCAAGTGTTATTGTGGATGAAATTCACAAATTATGCCTTGAAGTCAAAATCCAAAACAATATGCATCAAATCTTAGGAGTTCCAAAGGAAGAATTACAATTCGTAGAATGTTTATGTGAAAGATTTGATGATATGGTCCCTCCCATCTCAGAGAAAGAAGAAGGTGATCAGCAGATACAAATCCTAAAAGGAGAAGAAATATTAGTTGTGTTTGCTTTTAATTATTAG

Coding sequence (CDS)

ATGTCAAGATTAGTTTTGGAAGATGGAAACTGTTCAAGATCTGAATCCCAAATCTCAGAACAACAAGAACCAATCACAAACCTTACAGAAATAAACATCTTCAATCTACGTTGTAAGAGCCTTGGAGATTTTAATTGGTATAAGCACACGTTTCTAAGTAATTTGTTCATACGGGAAGACTGCAGAGAATCTGTGTGGAAAGAGCGATTTGTAGGACTTCCAGAATTGTTTGCGGAAAGAATATTTTTGAAACTGGAGACACATCAGTCTCAGGGTGGTTCAATTCCATTTGATTCAATGACTTATGGAGATCTTTCAAGTGTTATTGTGGATGAAATTCACAAATTATGCCTTGAAGTCAAAATCCAAAACAATATGCATCAAATCTTAGGAGTTCCAAAGGAAGAATTACAATTCGTAGAATGTTTATGTGAAAGATTTGATGATATGGTCCCTCCCATCTCAGAGAAAGAAGAAGGTGATCAGCAGATACAAATCCTAAAAGGAGAAGAAATATTAGTTGTGTTTGCTTTTAATTATTAG

Protein sequence

MSRLVLEDGNCSRSESQISEQQEPITNLTEINIFNLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFVGLPELFAERIFLKLETHQSQGGSIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERFDDMVPPISEKEEGDQQIQILKGEEILVVFAFNY

Homology

[Close]

BLAST of Bhi10G001270 vs. TrEMBL
Match: tr|A5AFI5|A5AFI5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042359 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.1e-19
Identity = 50/143 (34.97%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 658 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 717

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 718 QIPYDKLTYGEIISIVTAEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 777

Query: 155 MVPPISEKEEGDQQIQILKGEEI 173
            +PP  +K   + +  +   ++I
Sbjct: 778 TMPPSKQKPNSESRTDLDNEDDI 795

[Close]

BLAST of Bhi10G001270 vs. TrEMBL
Match: tr|A5ANM4|A5ANM4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008013 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 672 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 731

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 732 QIPYDKLTYGEIISIVTAEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 791

Query: 155 MVPPISEK 158
            +PP  +K
Sbjct: 792 TIPPSKQK 794

[Close]

BLAST of Bhi10G001270 vs. TrEMBL
Match: tr|A5AWY3|A5AWY3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043898 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-18
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 672 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 731

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 732 QIPYDKLTYGEIISIVTGEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 791

Query: 155 MVPPISEKEEGDQ 163
            +PP  +K    +
Sbjct: 792 TMPPSKQKPSNSE 799

[Close]

BLAST of Bhi10G001270 vs. TrEMBL
Match: tr|A5BNN5|A5BNN5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_021290 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-18
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 495 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 554

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 555 QIPYDKLTYGEIISIVTGEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 614

Query: 155 MVPPISEK 158
            +PP  +K
Sbjct: 615 TMPPSKQK 617

[Close]

BLAST of Bhi10G001270 vs. TrEMBL
Match: tr|A5BKX9|A5BKX9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018354 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-18
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 460 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 519

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 520 QIPYDKLTYGEIISIVTGEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 579

Query: 155 MVPPISEK 158
            +PP  +K
Sbjct: 580 TMPPSKQK 582

[Close]

BLAST of Bhi10G001270 vs. NCBI nr
Match: CAN80018.1 (hypothetical protein VITISV_042359 [Vitis vinifera])

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 50/143 (34.97%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 658 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 717

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 718 QIPYDKLTYGEIISIVTAEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 777

Query: 155 MVPPISEKEEGDQQIQILKGEEI 173
            +PP  +K   + +  +   ++I
Sbjct: 778 TMPPSKQKPNSESRTDLDNEDDI 795

[Close]

BLAST of Bhi10G001270 vs. NCBI nr
Match: CAN82391.1 (hypothetical protein VITISV_008013 [Vitis vinifera])

HSP 1 Score: 102.1 bits (253), Expect = 2.1e-18
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 672 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 731

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 732 QIPYDKLTYGEIISIVTAEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 791

Query: 155 MVPPISEK 158
            +PP  +K
Sbjct: 792 TIPPSKQK 794

[Close]

BLAST of Bhi10G001270 vs. NCBI nr
Match: CAN67571.1 (hypothetical protein VITISV_036869 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 672 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 731

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 732 QIPYDKLTYGEIISIVTGEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 791

Query: 155 MVPPISEK 158
            +PP  +K
Sbjct: 792 TMPPSKQK 794

[Close]

BLAST of Bhi10G001270 vs. NCBI nr
Match: CAN67572.1 (hypothetical protein VITISV_036870 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 431 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 490

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 491 QIPYDKLTYGEIISIVTGEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 550

Query: 155 MVPPISEK 158
            +PP  +K
Sbjct: 551 TMPPSKQK 553

[Close]

BLAST of Bhi10G001270 vs. NCBI nr
Match: CAN76138.1 (hypothetical protein VITISV_043898 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 0


Query: 35  NLRCKSLGDFNWYKHTFLSNLFIREDCRESVWKERFV-GLPELFAERIFLKLETHQSQGG 94
           NL+C  L DF WYK  FL+ + +R DC +S WKE+F+ GLP+LF+ERI +K+   +   G
Sbjct: 672 NLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIRIKI--REQYNG 731

Query: 95  SIPFDSMTYGDLSSVIVDEIHKLCLEVKIQNNMHQILGVPKEELQFVECLCERF----DD 154
            IP+D +TYG++ S++  E  KLC + K++  M     + K E       C +F     +
Sbjct: 732 QIPYDKLTYGEIISIVTGEGIKLCNDFKLKQQMKNEQKIYKNEF---GSFCSQFGFSQKE 791

Query: 155 MVPPISEKEEGDQ 163
            +PP  +K    +
Sbjct: 792 TMPPSKQKPSNSE 799

The following BLAST results are available for this feature:

BLAST of Bhi10G001270 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10G001270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10G001270 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A5AFI5\|A5AFI5_VITVI	8.1e-19	34.97	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042359 PE=4 SV=1	[more]
tr\|A5ANM4\|A5ANM4_VITVI	1.4e-18	38.28	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008013 PE=4 SV=1	[more]
tr\|A5AWY3\|A5AWY3_VITVI	1.8e-18	36.84	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043898 PE=4 SV=1	[more]
tr\|A5BNN5\|A5BNN5_VITVI	1.8e-18	38.28	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_021290 PE=4 SV=1	[more]
tr\|A5BKX9\|A5BKX9_VITVI	1.8e-18	38.28	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018354 PE=4 SV=1	[more]

BLAST of Bhi10G001270 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN80018.1	1.2e-18	34.97	hypothetical protein VITISV_042359 [Vitis vinifera]	[more]
CAN82391.1	2.1e-18	38.28	hypothetical protein VITISV_008013 [Vitis vinifera]	[more]
CAN67571.1	2.7e-18	38.28	hypothetical protein VITISV_036869 [Vitis vinifera]	[more]
CAN67572.1	2.7e-18	38.28	hypothetical protein VITISV_036870 [Vitis vinifera]	[more]
CAN76138.1	2.7e-18	36.84	hypothetical protein VITISV_043898 [Vitis vinifera]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001270	Bhi10M001270	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33054:SF8	SUBFAMILY NOT NAMED	coord: 33..164
None	No IPR available	PANTHER	PTHR33054	FAMILY NOT NAMED	coord: 33..164

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G001270	Cucumber (Gy14) v1	cgywgoB534
Bhi10G001270	Cucumber (Gy14) v2	cgybwgoB168
Bhi10G001270	Cucurbita maxima (Rimu)	cmawgoB0696
Bhi10G001270	Cucurbita moschata (Rifu)	cmowgoB0690
Bhi10G001270	Cucurbita pepo (Zucchini)	cpewgoB0358
Bhi10G001270	Wild cucumber (PI 183967)	cpiwgoB171
Bhi10G001270	Cucumber (Chinese Long) v3	cucwgoB180
Bhi10G001270	Cucumber (Chinese Long) v2	cuwgoB174
Bhi10G001270	Cucumber (Chinese Long) v2	cuwgoB187
Bhi10G001270	Bottle gourd (USVL1VR-Ls)	lsiwgoB069
Bhi10G001270	Melon (DHL92) v3.6.1	medwgoB128
Bhi10G001270	Melon (DHL92) v3.6.1	medwgoB139
Bhi10G001270	Melon (DHL92) v3.5.1	mewgoB126