Bhi10M000788 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10M000788
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	F-box/LRR-repeat protein
Location	chr10 : 20845417 .. 20845773 (+)
Sequence length	357

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTGAGGAAGCGAAATGGATGGAGGCTTATGATTTTGATGGTAAGGATTACTGGAAGTCACCGTATGGCGATTTCCGTTGCCTCAGAAAGTACCTCAAGACTGTTATGATATACGGATATGTAACTGAGCCATACGTGTTGGAGCTTATAGAATTTCTATTGAAGAATGCCTTGGTCCTGGAAAAGGTGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTTTTCGATCAGGAGGATCGTTTCACTCCTGAAGAACTACTTCAGTTTTCTCAGAAACTGTTAACTCTTCCAAGGGCATCCAAGTCTGCTGTAATTCAGTTCTGCTAA

mRNA sequence

ACTGAGGAAGCGAAATGGATGGAGGCTTATGATTTTGATGGTAAGGATTACTGGAAGTCACCGTATGGCGATTTCCGTTGCCTCAGAAAGTACCTCAAGACTGTTATGATATACGGATATGTAACTGAGCCATACGTGTTGGAGCTTATAGAATTTCTATTGAAGAATGCCTTGGTCCTGGAAAAGGTGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTTTTCGATCAGGAGGATCGTTTCACTCCTGAAGAACTACTTCAGTTTTCTCAGAAACTGTTAACTCTTCCAAGGGCATCCAAGTCTGCTGTAATTCAGTTCTGCTAA

Coding sequence (CDS)

ACTGAGGAAGCGAAATGGATGGAGGCTTATGATTTTGATGGTAAGGATTACTGGAAGTCACCGTATGGCGATTTCCGTTGCCTCAGAAAGTACCTCAAGACTGTTATGATATACGGATATGTAACTGAGCCATACGTGTTGGAGCTTATAGAATTTCTATTGAAGAATGCCTTGGTCCTGGAAAAGGTGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTTTTCGATCAGGAGGATCGTTTCACTCCTGAAGAACTACTTCAGTTTTCTCAGAAACTGTTAACTCTTCCAAGGGCATCCAAGTCTGCTGTAATTCAGTTCTGCTAA

Protein sequence

TEEAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKVVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC

Homology

[Close]

BLAST of Bhi10M000788 vs. TrEMBL
Match: tr|A0A1S4E641|A0A1S4E641_CUCME (uncharacterized protein LOC107992372 OS=Cucumis melo OX=3656 GN=LOC107992372 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-55
Identity = 113/118 (95.76%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   TEEAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVL 60
           TEEAKWMEAYDFDGKDYWKS  GDFR LRKYLKTVMIYGYVTEPYVLELIEFLLKNALVL
Sbjct: 32  TEEAKWMEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVL 91

Query: 61  EKVVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC 119
           EK+VISTKRTLQPIHQYELFKDAV DQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC
Sbjct: 92  EKMVISTKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC 149

[Close]

BLAST of Bhi10M000788 vs. TrEMBL
Match: tr|A0A0A0KDY5|A0A0A0KDY5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169300 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.6e-53
Identity = 110/119 (92.44%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   TEEAKWMEAYDFDGKDYWKSPYGDFR-CLRKYLKTVMIYGYVTEPYVLELIEFLLKNALV 60
           TEEAKWMEAYDFDGK YWKS  GDFR  LRKYLKTV IYGYVTEPYVLELIEFLLKNALV
Sbjct: 394 TEEAKWMEAYDFDGKSYWKSQNGDFRGGLRKYLKTVKIYGYVTEPYVLELIEFLLKNALV 453

Query: 61  LEKVVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC 119
           LEK+VISTK+TLQPIHQYELFKDAVFDQEDRFTP+ELLQFSQKLLTLPRASKSAVIQFC
Sbjct: 454 LEKMVISTKKTLQPIHQYELFKDAVFDQEDRFTPKELLQFSQKLLTLPRASKSAVIQFC 512

[Close]

BLAST of Bhi10M000788 vs. TrEMBL
Match: tr|A0A1R3GSH2|A0A1R3GSH2_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33627 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.3e-24
Identity = 63/116 (54.31%), Postives = 81/116 (69.83%), Query Frame = 0


Query: 3   EAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEK 62
           E +W E YD D   +W S  G F CL+ +LKT+ IYG +TEPYV++ IEFLLK A+VLE 
Sbjct: 399 EEEWAE-YDLDMSTFWSSQVGSFHCLQYHLKTITIYGLITEPYVIDFIEFLLKKAMVLES 458

Query: 63  VVISTKRTLQPIHQYELF-KDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQF 118
           +VIST   L+P  Q E+F     + ++D FT E+ L+FSQKLL+LPR SK AVIQF
Sbjct: 459 LVISTDTALKPPQQPEIFGVTYCYGKKDVFTTEKRLEFSQKLLSLPRVSKRAVIQF 513

[Close]

BLAST of Bhi10M000788 vs. TrEMBL
Match: tr|A0A1R3KSV4|A0A1R3KSV4_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_04774 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-23
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 0


Query: 2   EEAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLE 61
           ++ KWME+++FDG+ +W S  G   CL+ +LKTV +YGYVTEPYV ++I+FLLKNA+VLE
Sbjct: 397 DKFKWMESHNFDGESFWSSQEGTIHCLQNHLKTVKVYGYVTEPYVFDIIKFLLKNAMVLE 456

Query: 62  KVVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQF 118
           K+ IST+ T  P H  EL+       +  +T E+ ++F+QKL +LPRAS  AVI F
Sbjct: 457 KLEISTQATFNPSHS-ELY---CSHWKAEYTKEQQVEFAQKLFSLPRASTRAVIHF 508

[Close]

BLAST of Bhi10M000788 vs. TrEMBL
Match: tr|A0A1R3H5U4|A0A1R3H5U4_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21466 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.5e-23
Identity = 58/110 (52.73%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 3   EAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEK 62
           E KWME+YDFDG  +WK   G F CL K LK++ IYG++TEPYV+++IEFLLKNA+VLEK
Sbjct: 402 ECKWMESYDFDGAKFWKLQQGTFHCLEKNLKSIKIYGHITEPYVIDMIEFLLKNAMVLEK 461

Query: 63  VVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKS 113
           + IST +T  P       K++  +++   T E+  +FSQKL +LPRAS S
Sbjct: 462 LEISTHKTFGPSP-----KNSCCERKVELTTEQRQEFSQKLFSLPRASTS 506

[Close]

BLAST of Bhi10M000788 vs. NCBI nr
Match: XP_016903698.1 (PREDICTED: uncharacterized protein LOC107992372 [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 1.8e-55
Identity = 113/118 (95.76%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   TEEAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVL 60
           TEEAKWMEAYDFDGKDYWKS  GDFR LRKYLKTVMIYGYVTEPYVLELIEFLLKNALVL
Sbjct: 32  TEEAKWMEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVL 91

Query: 61  EKVVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC 119
           EK+VISTKRTLQPIHQYELFKDAV DQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC
Sbjct: 92  EKMVISTKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC 149

[Close]

BLAST of Bhi10M000788 vs. NCBI nr
Match: XP_004143230.1 (PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Cucumis sativus] >KGN47014.1 hypothetical protein Csa_6G169300 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 8.5e-53
Identity = 110/119 (92.44%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   TEEAKWMEAYDFDGKDYWKSPYGDFR-CLRKYLKTVMIYGYVTEPYVLELIEFLLKNALV 60
           TEEAKWMEAYDFDGK YWKS  GDFR  LRKYLKTV IYGYVTEPYVLELIEFLLKNALV
Sbjct: 394 TEEAKWMEAYDFDGKSYWKSQNGDFRGGLRKYLKTVKIYGYVTEPYVLELIEFLLKNALV 453

Query: 61  LEKVVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC 119
           LEK+VISTK+TLQPIHQYELFKDAVFDQEDRFTP+ELLQFSQKLLTLPRASKSAVIQFC
Sbjct: 454 LEKMVISTKKTLQPIHQYELFKDAVFDQEDRFTPKELLQFSQKLLTLPRASKSAVIQFC 512

[Close]

BLAST of Bhi10M000788 vs. NCBI nr
Match: OMO60997.1 (hypothetical protein COLO4_33627 [Corchorus olitorius])

HSP 1 Score: 118.6 bits (296), Expect = 1.4e-23
Identity = 63/116 (54.31%), Postives = 81/116 (69.83%), Query Frame = 0


Query: 3   EAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEK 62
           E +W E YD D   +W S  G F CL+ +LKT+ IYG +TEPYV++ IEFLLK A+VLE 
Sbjct: 399 EEEWAE-YDLDMSTFWSSQVGSFHCLQYHLKTITIYGLITEPYVIDFIEFLLKKAMVLES 458

Query: 63  VVISTKRTLQPIHQYELF-KDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQF 118
           +VIST   L+P  Q E+F     + ++D FT E+ L+FSQKLL+LPR SK AVIQF
Sbjct: 459 LVISTDTALKPPQQPEIFGVTYCYGKKDVFTTEKRLEFSQKLLSLPRVSKRAVIQF 513

[Close]

BLAST of Bhi10M000788 vs. NCBI nr
Match: OMP10150.1 (hypothetical protein COLO4_04774 [Corchorus olitorius])

HSP 1 Score: 117.9 bits (294), Expect = 2.4e-23
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 0


Query: 2   EEAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLE 61
           ++ KWME+++FDG+ +W S  G   CL+ +LKTV +YGYVTEPYV ++I+FLLKNA+VLE
Sbjct: 397 DKFKWMESHNFDGESFWSSQEGTIHCLQNHLKTVKVYGYVTEPYVFDIIKFLLKNAMVLE 456

Query: 62  KVVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQF 118
           K+ IST+ T  P H  EL+       +  +T E+ ++F+QKL +LPRAS  AVI F
Sbjct: 457 KLEISTQATFNPSHS-ELY---CSHWKAEYTKEQQVEFAQKLFSLPRASTRAVIHF 508

[Close]

BLAST of Bhi10M000788 vs. NCBI nr
Match: OMO65630.1 (hypothetical protein CCACVL1_21466 [Corchorus capsularis])

HSP 1 Score: 116.7 bits (291), Expect = 5.3e-23
Identity = 58/110 (52.73%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 3   EAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEK 62
           E KWME+YDFDG  +WK   G F CL K LK++ IYG++TEPYV+++IEFLLKNA+VLEK
Sbjct: 402 ECKWMESYDFDGAKFWKLQQGTFHCLEKNLKSIKIYGHITEPYVIDMIEFLLKNAMVLEK 461

Query: 63  VVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKS 113
           + IST +T  P       K++  +++   T E+  +FSQKL +LPRAS S
Sbjct: 462 LEISTHKTFGPSP-----KNSCCERKVELTTEQRQEFSQKLFSLPRASTS 506

The following BLAST results are available for this feature:

BLAST of Bhi10M000788 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10M000788 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10M000788 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E641\|A0A1S4E641_CUCME	1.2e-55	95.76	uncharacterized protein LOC107992372 OS=Cucumis melo OX=3656 GN=LOC107992372 PE=...	[more]
tr\|A0A0A0KDY5\|A0A0A0KDY5_CUCSA	5.6e-53	92.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169300 PE=4 SV=1	[more]
tr\|A0A1R3GSH2\|A0A1R3GSH2_9ROSI	9.3e-24	54.31	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33627 PE=4 SV=1	[more]
tr\|A0A1R3KSV4\|A0A1R3KSV4_9ROSI	1.6e-23	50.86	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_04774 PE=4 SV=1	[more]
tr\|A0A1R3H5U4\|A0A1R3H5U4_COCAP	3.5e-23	52.73	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21466 PE=4 ...	[more]

BLAST of Bhi10M000788 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903698.1	1.8e-55	95.76	PREDICTED: uncharacterized protein LOC107992372 [Cucumis melo]	[more]
XP_004143230.1	8.5e-53	92.44	PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Cucumis sativus] >KGN470...	[more]
OMO60997.1	1.4e-23	54.31	hypothetical protein COLO4_33627 [Corchorus olitorius]	[more]
OMP10150.1	2.4e-23	50.86	hypothetical protein COLO4_04774 [Corchorus olitorius]	[more]
OMO65630.1	5.3e-23	52.73	hypothetical protein CCACVL1_21466 [Corchorus capsularis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR006566	FBD

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi10G000788	Bhi10G000788	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi10M000788.exon1	Bhi10M000788.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi10M000788	cds.Bhi10M000788	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi10M000788	Bhi10M000788-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006566	FBD domain	SMART	SM00579	9598neu4hmm	coord: 26..118 e-value: 2.3E-6 score: 37.2
IPR006566	FBD domain	PFAM	PF08387	FBD	coord: 25..65 e-value: 3.5E-9 score: 36.3