Bhi10G000788 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G000788
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	F-box/LRR-repeat protein
Location	chr10 : 20845417 .. 20845773 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTGAGGAAGCGAAATGGATGGAGGCTTATGATTTTGATGGTAAGGATTACTGGAAGTCACCGTATGGCGATTTCCGTTGCCTCAGAAAGTACCTCAAGACTGTTATGATATACGGATATGTAACTGAGCCATACGTGTTGGAGCTTATAGAATTTCTATTGAAGAATGCCTTGGTCCTGGAAAAGGTGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTTTTCGATCAGGAGGATCGTTTCACTCCTGAAGAACTACTTCAGTTTTCTCAGAAACTGTTAACTCTTCCAAGGGCATCCAAGTCTGCTGTAATTCAGTTCTGCTAA

mRNA sequence

ACTGAGGAAGCGAAATGGATGGAGGCTTATGATTTTGATGGTAAGGATTACTGGAAGTCACCGTATGGCGATTTCCGTTGCCTCAGAAAGTACCTCAAGACTGTTATGATATACGGATATGTAACTGAGCCATACGTGTTGGAGCTTATAGAATTTCTATTGAAGAATGCCTTGGTCCTGGAAAAGGTGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTTTTCGATCAGGAGGATCGTTTCACTCCTGAAGAACTACTTCAGTTTTCTCAGAAACTGTTAACTCTTCCAAGGGCATCCAAGTCTGCTGTAATTCAGTTCTGCTAA

Coding sequence (CDS)

ACTGAGGAAGCGAAATGGATGGAGGCTTATGATTTTGATGGTAAGGATTACTGGAAGTCACCGTATGGCGATTTCCGTTGCCTCAGAAAGTACCTCAAGACTGTTATGATATACGGATATGTAACTGAGCCATACGTGTTGGAGCTTATAGAATTTCTATTGAAGAATGCCTTGGTCCTGGAAAAGGTGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTTTTCGATCAGGAGGATCGTTTCACTCCTGAAGAACTACTTCAGTTTTCTCAGAAACTGTTAACTCTTCCAAGGGCATCCAAGTCTGCTGTAATTCAGTTCTGCTAA

Protein sequence

TEEAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKVVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC

Homology

[Close]

BLAST of Bhi10G000788 vs. TrEMBL
Match: tr|A0A1S4E641|A0A1S4E641_CUCME (uncharacterized protein LOC107992372 OS=Cucumis melo OX=3656 GN=LOC107992372 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-55
Identity = 113/118 (95.76%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   TEEAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVL 60
           TEEAKWMEAYDFDGKDYWKS  GDFR LRKYLKTVMIYGYVTEPYVLELIEFLLKNALVL
Sbjct: 32  TEEAKWMEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVL 91

Query: 61  EKVVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC 119
           EK+VISTKRTLQPIHQYELFKDAV DQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC
Sbjct: 92  EKMVISTKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC 149

[Close]

BLAST of Bhi10G000788 vs. TrEMBL
Match: tr|A0A0A0KDY5|A0A0A0KDY5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169300 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.6e-53
Identity = 110/119 (92.44%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   TEEAKWMEAYDFDGKDYWKSPYGDFR-CLRKYLKTVMIYGYVTEPYVLELIEFLLKNALV 60
           TEEAKWMEAYDFDGK YWKS  GDFR  LRKYLKTV IYGYVTEPYVLELIEFLLKNALV
Sbjct: 394 TEEAKWMEAYDFDGKSYWKSQNGDFRGGLRKYLKTVKIYGYVTEPYVLELIEFLLKNALV 453

Query: 61  LEKVVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC 119
           LEK+VISTK+TLQPIHQYELFKDAVFDQEDRFTP+ELLQFSQKLLTLPRASKSAVIQFC
Sbjct: 454 LEKMVISTKKTLQPIHQYELFKDAVFDQEDRFTPKELLQFSQKLLTLPRASKSAVIQFC 512

[Close]

BLAST of Bhi10G000788 vs. TrEMBL
Match: tr|A0A1R3GSH2|A0A1R3GSH2_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33627 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.3e-24
Identity = 63/116 (54.31%), Postives = 81/116 (69.83%), Query Frame = 0


Query: 3   EAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEK 62
           E +W E YD D   +W S  G F CL+ +LKT+ IYG +TEPYV++ IEFLLK A+VLE 
Sbjct: 399 EEEWAE-YDLDMSTFWSSQVGSFHCLQYHLKTITIYGLITEPYVIDFIEFLLKKAMVLES 458

Query: 63  VVISTKRTLQPIHQYELF-KDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQF 118
           +VIST   L+P  Q E+F     + ++D FT E+ L+FSQKLL+LPR SK AVIQF
Sbjct: 459 LVISTDTALKPPQQPEIFGVTYCYGKKDVFTTEKRLEFSQKLLSLPRVSKRAVIQF 513

[Close]

BLAST of Bhi10G000788 vs. TrEMBL
Match: tr|A0A1R3KSV4|A0A1R3KSV4_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_04774 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-23
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 0


Query: 2   EEAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLE 61
           ++ KWME+++FDG+ +W S  G   CL+ +LKTV +YGYVTEPYV ++I+FLLKNA+VLE
Sbjct: 397 DKFKWMESHNFDGESFWSSQEGTIHCLQNHLKTVKVYGYVTEPYVFDIIKFLLKNAMVLE 456

Query: 62  KVVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQF 118
           K+ IST+ T  P H  EL+       +  +T E+ ++F+QKL +LPRAS  AVI F
Sbjct: 457 KLEISTQATFNPSHS-ELY---CSHWKAEYTKEQQVEFAQKLFSLPRASTRAVIHF 508

[Close]

BLAST of Bhi10G000788 vs. TrEMBL
Match: tr|A0A1R3H5U4|A0A1R3H5U4_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21466 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.5e-23
Identity = 58/110 (52.73%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 3   EAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEK 62
           E KWME+YDFDG  +WK   G F CL K LK++ IYG++TEPYV+++IEFLLKNA+VLEK
Sbjct: 402 ECKWMESYDFDGAKFWKLQQGTFHCLEKNLKSIKIYGHITEPYVIDMIEFLLKNAMVLEK 461

Query: 63  VVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKS 113
           + IST +T  P       K++  +++   T E+  +FSQKL +LPRAS S
Sbjct: 462 LEISTHKTFGPSP-----KNSCCERKVELTTEQRQEFSQKLFSLPRASTS 506

[Close]

BLAST of Bhi10G000788 vs. NCBI nr
Match: XP_016903698.1 (PREDICTED: uncharacterized protein LOC107992372 [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 1.8e-55
Identity = 113/118 (95.76%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   TEEAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVL 60
           TEEAKWMEAYDFDGKDYWKS  GDFR LRKYLKTVMIYGYVTEPYVLELIEFLLKNALVL
Sbjct: 32  TEEAKWMEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVL 91

Query: 61  EKVVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC 119
           EK+VISTKRTLQPIHQYELFKDAV DQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC
Sbjct: 92  EKMVISTKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC 149

[Close]

BLAST of Bhi10G000788 vs. NCBI nr
Match: XP_004143230.1 (PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Cucumis sativus] >KGN47014.1 hypothetical protein Csa_6G169300 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 8.5e-53
Identity = 110/119 (92.44%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   TEEAKWMEAYDFDGKDYWKSPYGDFR-CLRKYLKTVMIYGYVTEPYVLELIEFLLKNALV 60
           TEEAKWMEAYDFDGK YWKS  GDFR  LRKYLKTV IYGYVTEPYVLELIEFLLKNALV
Sbjct: 394 TEEAKWMEAYDFDGKSYWKSQNGDFRGGLRKYLKTVKIYGYVTEPYVLELIEFLLKNALV 453

Query: 61  LEKVVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQFC 119
           LEK+VISTK+TLQPIHQYELFKDAVFDQEDRFTP+ELLQFSQKLLTLPRASKSAVIQFC
Sbjct: 454 LEKMVISTKKTLQPIHQYELFKDAVFDQEDRFTPKELLQFSQKLLTLPRASKSAVIQFC 512

[Close]

BLAST of Bhi10G000788 vs. NCBI nr
Match: OMO60997.1 (hypothetical protein COLO4_33627 [Corchorus olitorius])

HSP 1 Score: 118.6 bits (296), Expect = 1.4e-23
Identity = 63/116 (54.31%), Postives = 81/116 (69.83%), Query Frame = 0


Query: 3   EAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEK 62
           E +W E YD D   +W S  G F CL+ +LKT+ IYG +TEPYV++ IEFLLK A+VLE 
Sbjct: 399 EEEWAE-YDLDMSTFWSSQVGSFHCLQYHLKTITIYGLITEPYVIDFIEFLLKKAMVLES 458

Query: 63  VVISTKRTLQPIHQYELF-KDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQF 118
           +VIST   L+P  Q E+F     + ++D FT E+ L+FSQKLL+LPR SK AVIQF
Sbjct: 459 LVISTDTALKPPQQPEIFGVTYCYGKKDVFTTEKRLEFSQKLLSLPRVSKRAVIQF 513

[Close]

BLAST of Bhi10G000788 vs. NCBI nr
Match: OMP10150.1 (hypothetical protein COLO4_04774 [Corchorus olitorius])

HSP 1 Score: 117.9 bits (294), Expect = 2.4e-23
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 0


Query: 2   EEAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLE 61
           ++ KWME+++FDG+ +W S  G   CL+ +LKTV +YGYVTEPYV ++I+FLLKNA+VLE
Sbjct: 397 DKFKWMESHNFDGESFWSSQEGTIHCLQNHLKTVKVYGYVTEPYVFDIIKFLLKNAMVLE 456

Query: 62  KVVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSAVIQF 118
           K+ IST+ T  P H  EL+       +  +T E+ ++F+QKL +LPRAS  AVI F
Sbjct: 457 KLEISTQATFNPSHS-ELY---CSHWKAEYTKEQQVEFAQKLFSLPRASTRAVIHF 508

[Close]

BLAST of Bhi10G000788 vs. NCBI nr
Match: OMO65630.1 (hypothetical protein CCACVL1_21466 [Corchorus capsularis])

HSP 1 Score: 116.7 bits (291), Expect = 5.3e-23
Identity = 58/110 (52.73%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 3   EAKWMEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEK 62
           E KWME+YDFDG  +WK   G F CL K LK++ IYG++TEPYV+++IEFLLKNA+VLEK
Sbjct: 402 ECKWMESYDFDGAKFWKLQQGTFHCLEKNLKSIKIYGHITEPYVIDMIEFLLKNAMVLEK 461

Query: 63  VVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKS 113
           + IST +T  P       K++  +++   T E+  +FSQKL +LPRAS S
Sbjct: 462 LEISTHKTFGPSP-----KNSCCERKVELTTEQRQEFSQKLFSLPRASTS 506

The following BLAST results are available for this feature:

BLAST of Bhi10G000788 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10G000788 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10G000788 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E641\|A0A1S4E641_CUCME	1.2e-55	95.76	uncharacterized protein LOC107992372 OS=Cucumis melo OX=3656 GN=LOC107992372 PE=...	[more]
tr\|A0A0A0KDY5\|A0A0A0KDY5_CUCSA	5.6e-53	92.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169300 PE=4 SV=1	[more]
tr\|A0A1R3GSH2\|A0A1R3GSH2_9ROSI	9.3e-24	54.31	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33627 PE=4 SV=1	[more]
tr\|A0A1R3KSV4\|A0A1R3KSV4_9ROSI	1.6e-23	50.86	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_04774 PE=4 SV=1	[more]
tr\|A0A1R3H5U4\|A0A1R3H5U4_COCAP	3.5e-23	52.73	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21466 PE=4 ...	[more]

BLAST of Bhi10G000788 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903698.1	1.8e-55	95.76	PREDICTED: uncharacterized protein LOC107992372 [Cucumis melo]	[more]
XP_004143230.1	8.5e-53	92.44	PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Cucumis sativus] >KGN470...	[more]
OMO60997.1	1.4e-23	54.31	hypothetical protein COLO4_33627 [Corchorus olitorius]	[more]
OMP10150.1	2.4e-23	50.86	hypothetical protein COLO4_04774 [Corchorus olitorius]	[more]
OMO65630.1	5.3e-23	52.73	hypothetical protein CCACVL1_21466 [Corchorus capsularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006566	FBD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M000788	Bhi10M000788	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006566	FBD domain	SMART	SM00579	9598neu4hmm	coord: 26..118 e-value: 2.3E-6 score: 37.2
IPR006566	FBD domain	PFAM	PF08387	FBD	coord: 25..65 e-value: 3.5E-9 score: 36.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi10G000788	CsGy6G013200	Cucumber (Gy14) v2	cgybwgoB580

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G000788	Wax gourd	wgowgoB069
Bhi10G000788	Cucumber (Gy14) v1	cgywgoB273
Bhi10G000788	Cucumber (Gy14) v1	cgywgoB382
Bhi10G000788	Cucumber (Gy14) v1	cgywgoB437
Bhi10G000788	Cucumber (Gy14) v2	cgybwgoB585
Bhi10G000788	Cucurbita maxima (Rimu)	cmawgoB0133
Bhi10G000788	Cucurbita maxima (Rimu)	cmawgoB0241
Bhi10G000788	Cucurbita maxima (Rimu)	cmawgoB0666
Bhi10G000788	Cucurbita maxima (Rimu)	cmawgoB0692
Bhi10G000788	Cucurbita maxima (Rimu)	cmawgoB0746
Bhi10G000788	Cucurbita moschata (Rifu)	cmowgoB0127
Bhi10G000788	Cucurbita moschata (Rifu)	cmowgoB0236
Bhi10G000788	Cucurbita moschata (Rifu)	cmowgoB0664
Bhi10G000788	Cucurbita moschata (Rifu)	cmowgoB0686
Bhi10G000788	Cucurbita moschata (Rifu)	cmowgoB0737
Bhi10G000788	Cucurbita pepo (Zucchini)	cpewgoB0337
Bhi10G000788	Cucurbita pepo (Zucchini)	cpewgoB0353
Bhi10G000788	Cucurbita pepo (Zucchini)	cpewgoB0629
Bhi10G000788	Cucurbita pepo (Zucchini)	cpewgoB0865
Bhi10G000788	Cucurbita pepo (Zucchini)	cpewgoB0959
Bhi10G000788	Wild cucumber (PI 183967)	cpiwgoB020
Bhi10G000788	Wild cucumber (PI 183967)	cpiwgoB612
Bhi10G000788	Wild cucumber (PI 183967)	cpiwgoB618
Bhi10G000788	Cucumber (Chinese Long) v3	cucwgoB023
Bhi10G000788	Cucumber (Chinese Long) v3	cucwgoB628
Bhi10G000788	Cucumber (Chinese Long) v3	cucwgoB633
Bhi10G000788	Cucumber (Chinese Long) v2	cuwgoB020
Bhi10G000788	Cucumber (Chinese Long) v2	cuwgoB607
Bhi10G000788	Cucumber (Chinese Long) v2	cuwgoB613
Bhi10G000788	Bottle gourd (USVL1VR-Ls)	lsiwgoB068
Bhi10G000788	Bottle gourd (USVL1VR-Ls)	lsiwgoB126
Bhi10G000788	Melon (DHL92) v3.6.1	medwgoB129
Bhi10G000788	Melon (DHL92) v3.6.1	medwgoB157
Bhi10G000788	Melon (DHL92) v3.6.1	medwgoB483
Bhi10G000788	Melon (DHL92) v3.5.1	mewgoB113
Bhi10G000788	Melon (DHL92) v3.5.1	mewgoB154
Bhi10G000788	Melon (DHL92) v3.5.1	mewgoB482
Bhi10G000788	Watermelon (Charleston Gray)	wcgwgoB298
Bhi10G000788	Watermelon (Charleston Gray)	wcgwgoB332
Bhi10G000788	Watermelon (97103) v2	wgowmbB368
Bhi10G000788	Watermelon (97103) v2	wgowmbB382
Bhi10G000788	Watermelon (97103) v1	wgowmB367
Bhi10G000788	Watermelon (97103) v1	wgowmB396
Bhi10G000788	Silver-seed gourd	carwgoB0036
Bhi10G000788	Silver-seed gourd	carwgoB0419
Bhi10G000788	Silver-seed gourd	carwgoB0472
Bhi10G000788	Silver-seed gourd	carwgoB0643