Bhi10M000597 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10M000597
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr10 : 15798980 .. 15799291 (-)
Sequence length	312

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCATAAAAGTGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGCCGCAAATCTCGCCGAGGCACAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAATGCTGACAGCACCATGGCTGTGGCTGCCGTTGCTGTCACAGCAGCGGCCACAGCAGTGGCCATGGATGCCTTTGACGATGACGATGGTAGCACCCATGCCCACGGTGGTGAGGGGGGTGGTGGAGATTAG

mRNA sequence

ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCATAAAAGTGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGCCGCAAATCTCGCCGAGGCACAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAATGCTGACAGCACCATGGCTGTGGCTGCCGTTGCTGTCACAGCAGCGGCCACAGCAGTGGCCATGGATGCCTTTGACGATGACGATGGTAGCACCCATGCCCACGGTGGTGAGGGGGGTGGTGGAGATTAG

Coding sequence (CDS)

ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCATAAAAGTGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGCCGCAAATCTCGCCGAGGCACAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAATGCTGACAGCACCATGGCTGTGGCTGCCGTTGCTGTCACAGCAGCGGCCACAGCAGTGGCCATGGATGCCTTTGACGATGACGATGGTAGCACCCATGCCCACGGTGGTGAGGGGGGTGGTGGAGATTAG

Protein sequence

MESSKICFCIPRHKSGHKADGGSEKSSKSKPSRRKSRRGTKGGKHSSSSDSSGNGNTGDANADSTMAVAAVAVTAAATAVAMDAFDDDDGSTHAHGGEGGGGD

Homology

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BLAST of Bhi10M000597 vs. TrEMBL
Match: tr|A0A0A0KFD0|A0A0A0KFD0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.2e-04
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 3  SSKICFCIPRHKSGHKADGGSEK 26
          SSKICFCIPRHK+GHKADGGSEK
Sbjct: 4  SSKICFCIPRHKNGHKADGGSEK 26

[Close]

BLAST of Bhi10M000597 vs. NCBI nr
Match: KGN47122.1 (hypothetical protein Csa_6G188150 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 6.3e-04
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 3  SSKICFCIPRHKSGHKADGGSEK 26
          SSKICFCIPRHK+GHKADGGSEK
Sbjct: 4  SSKICFCIPRHKNGHKADGGSEK 26

The following BLAST results are available for this feature:

BLAST of Bhi10M000597 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10M000597 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10M000597 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFD0\|A0A0A0KFD0_CUCSA	4.2e-04	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1	[more]

BLAST of Bhi10M000597 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47122.1	6.3e-04	95.65	hypothetical protein Csa_6G188150 [Cucumis sativus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi10G000597	Bhi10G000597	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi10M000597	cds.Bhi10M000597	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi10M000597.exon1	Bhi10M000597.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi10M000597	Bhi10M000597-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..29