Bhi09M002626 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09M002626
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr9 : 82014169 .. 82014342 (+)
Sequence length	174

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGATGAAGATTGGGAGGAGATGGATTTGAGAGCTACAAGTGCAATCAGGCTAAATTTGGCTAAGAATGTTCTTACAAATGTGCATGGAATTATAACAGCTAAAGAGCTTTGGGAGAAGCTTAAAGATCAAGCAAAAAGCATCTCAAATCGGTTATGCCTGAAAGAGTAG

mRNA sequence

ATGAGGGATGAAGATTGGGAGGAGATGGATTTGAGAGCTACAAGTGCAATCAGGCTAAATTTGGCTAAGAATGTTCTTACAAATGTGCATGGAATTATAACAGCTAAAGAGCTTTGGGAGAAGCTTAAAGATCAAGCAAAAAGCATCTCAAATCGGTTATGCCTGAAAGAGTAG

Coding sequence (CDS)

ATGAGGGATGAAGATTGGGAGGAGATGGATTTGAGAGCTACAAGTGCAATCAGGCTAAATTTGGCTAAGAATGTTCTTACAAATGTGCATGGAATTATAACAGCTAAAGAGCTTTGGGAGAAGCTTAAAGATCAAGCAAAAAGCATCTCAAATCGGTTATGCCTGAAAGAGTAG

Protein sequence

MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKDQAKSISNRLCLKE

Homology

[Close]

BLAST of Bhi09M002626 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-05
Identity = 24/59 (40.68%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 1   MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
           M+ EDW ++D RA SAIRL+L+ +V+ N+    TA+ +W +L+    +K+++N+L LK+
Sbjct: 47  MKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKK 105

[Close]

BLAST of Bhi09M002626 vs. TrEMBL
Match: tr|A0A2I4F725|A0A2I4F725_9ROSI (uncharacterized protein LOC108996131 OS=Juglans regia OX=51240 GN=LOC108996131 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.4e-14
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1  MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
          M DEDWE++DLRA SAIRL LAKNVL N+HGI TAKELWEKL++  Q K +SNR+ LKE
Sbjct: 33 MSDEDWEDLDLRAASAIRLCLAKNVLANIHGISTAKELWEKLEELYQTKGVSNRVYLKE 91

[Close]

BLAST of Bhi09M002626 vs. TrEMBL
Match: tr|V4T614|V4T614_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10023471mg PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 43/57 (75.44%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 3  DEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
          DEDWEE+D RA SAIRL LAKNVL NV  I TAKELWEKL+   Q KSISNRL LKE
Sbjct: 30 DEDWEELDDRAASAIRLCLAKNVLANVGNIPTAKELWEKLEKLYQTKSISNRLYLKE 86

[Close]

BLAST of Bhi09M002626 vs. TrEMBL
Match: tr|A0A2G2VS38|A0A2G2VS38_CAPBA (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_23490 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 3   DEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
           DE+WEE+D++A S IRL LAK VLTNV G+ T KELWEKL++  Q KSISNRL LKE
Sbjct: 268 DEEWEELDMKAESQIRLCLAKYVLTNVIGLSTTKELWEKLEELYQTKSISNRLYLKE 324

[Close]

BLAST of Bhi09M002626 vs. TrEMBL
Match: tr|A0A2K3L7F8|A0A2K3L7F8_TRIPR (Cytochrome p450 OS=Trifolium pratense OX=57577 GN=L195_g030394 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-10
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1   MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
           M  + WEE+DLRA SAIRL LAKNVL NV+ + +AKELWE+L+   QAK ISNRL LKE
Sbjct: 47  MXXDKWEELDLRAASAIRLCLAKNVLANVYNLSSAKELWERLERLYQAKDISNRLLLKE 105

[Close]

BLAST of Bhi09M002626 vs. TrEMBL
Match: tr|A0A2P5B2T4|A0A2P5B2T4_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_276620 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-10
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1  MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
          M DE+W+++D RA SAIR+ LAKNVL  V GI+TAKELW KL++  QAK +SNR+ LKE
Sbjct: 1  MSDEEWDDLDERAASAIRMCLAKNVLARVVGIMTAKELWRKLEELYQAKGVSNRVYLKE 59

[Close]

BLAST of Bhi09M002626 vs. NCBI nr
Match: XP_018827443.1 (PREDICTED: uncharacterized protein LOC108996131 [Juglans regia])

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-13
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1  MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
          M DEDWE++DLRA SAIRL LAKNVL N+HGI TAKELWEKL++  Q K +SNR+ LKE
Sbjct: 33 MSDEDWEDLDLRAASAIRLCLAKNVLANIHGISTAKELWEKLEELYQTKGVSNRVYLKE 91

[Close]

BLAST of Bhi09M002626 vs. NCBI nr
Match: XP_025611318.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC112703916 [Arachis hypogaea])

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-13
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1  MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLK--DQAKSISNRLCLKE 58
          M+DE+WEE+DLRATSAIRL LAKNVL NV G+ TAKELW+KL+   QAK ISNRL LK+
Sbjct: 1  MKDEEWEELDLRATSAIRLCLAKNVLANVQGMKTAKELWDKLERLHQAKGISNRLLLKD 59

[Close]

BLAST of Bhi09M002626 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 44/59 (74.58%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1   MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
           M  EDWEEMDLRA SAIR +LAKN+L NVH I TAKELWEKL+   QAK ISNRL LKE
Sbjct: 369 MSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALYQAKGISNRLYLKE 427

[Close]

BLAST of Bhi09M002626 vs. NCBI nr
Match: XP_022876702.1 (nucleolar protein 14-like [Olea europaea var. sylvestris])

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1   MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
           M +EDWEE+DL+A S IRL LAKNVLTN+H I   KELWEKL++  Q KS+SNRL LKE
Sbjct: 53  MSNEDWEELDLKAASIIRLCLAKNVLTNIHRISATKELWEKLEELYQTKSLSNRLYLKE 111

[Close]

BLAST of Bhi09M002626 vs. NCBI nr
Match: ESR55658.1 (hypothetical protein CICLE_v10023471mg, partial [Citrus clementina])

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-11
Identity = 43/57 (75.44%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 3  DEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
          DEDWEE+D RA SAIRL LAKNVL NV  I TAKELWEKL+   Q KSISNRL LKE
Sbjct: 30 DEDWEELDDRAASAIRLCLAKNVLANVGNIPTAKELWEKLEKLYQTKSISNRLYLKE 86

The following BLAST results are available for this feature:

BLAST of Bhi09M002626 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P10978\|POLX_TOBAC	1.7e-05	40.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Bhi09M002626 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi09M002626 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2I4F725\|A0A2I4F725_9ROSI	9.4e-14	71.19	uncharacterized protein LOC108996131 OS=Juglans regia OX=51240 GN=LOC108996131 P...	[more]
tr\|V4T614\|V4T614_9ROSI	2.0e-11	75.44	Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10023...	[more]
tr\|A0A2G2VS38\|A0A2G2VS38_CAPBA	1.3e-10	68.42	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_23490 PE=4 SV=1	[more]
tr\|A0A2K3L7F8\|A0A2K3L7F8_TRIPR	2.2e-10	66.10	Cytochrome p450 OS=Trifolium pratense OX=57577 GN=L195_g030394 PE=4 SV=1	[more]
tr\|A0A2P5B2T4\|A0A2P5B2T4_PARAD	2.8e-10	62.71	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_276620 PE...	[more]

BLAST of Bhi09M002626 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_018827443.1	1.4e-13	71.19	PREDICTED: uncharacterized protein LOC108996131 [Juglans regia]	[more]
XP_025611318.1	4.1e-13	72.88	LOW QUALITY PROTEIN: uncharacterized protein LOC112703916 [Arachis hypogaea]	[more]
XP_022139673.1	1.2e-12	74.58	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
XP_022876702.1	1.0e-11	67.80	nucleolar protein 14-like [Olea europaea var. sylvestris]	[more]
ESR55658.1	3.0e-11	75.44	hypothetical protein CICLE_v10023471mg, partial [Citrus clementina]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008113	peptide-methionine (S)-S-oxide reductase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi09G002626	Bhi09G002626	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi09M002626.exon1	Bhi09M002626.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi09M002626	cds.Bhi09M002626	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi09M002626	Bhi09M002626-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 6..56 e-value: 2.5E-6 score: 27.1