Bhi09G002626 (gene) Wax gourd

NameBhi09G002626
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr9 : 82014169 .. 82014342 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGATGAAGATTGGGAGGAGATGGATTTGAGAGCTACAAGTGCAATCAGGCTAAATTTGGCTAAGAATGTTCTTACAAATGTGCATGGAATTATAACAGCTAAAGAGCTTTGGGAGAAGCTTAAAGATCAAGCAAAAAGCATCTCAAATCGGTTATGCCTGAAAGAGTAG

mRNA sequence

ATGAGGGATGAAGATTGGGAGGAGATGGATTTGAGAGCTACAAGTGCAATCAGGCTAAATTTGGCTAAGAATGTTCTTACAAATGTGCATGGAATTATAACAGCTAAAGAGCTTTGGGAGAAGCTTAAAGATCAAGCAAAAAGCATCTCAAATCGGTTATGCCTGAAAGAGTAG

Coding sequence (CDS)

ATGAGGGATGAAGATTGGGAGGAGATGGATTTGAGAGCTACAAGTGCAATCAGGCTAAATTTGGCTAAGAATGTTCTTACAAATGTGCATGGAATTATAACAGCTAAAGAGCTTTGGGAGAAGCTTAAAGATCAAGCAAAAAGCATCTCAAATCGGTTATGCCTGAAAGAGTAG

Protein sequence

MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKDQAKSISNRLCLKE
BLAST of Bhi09G002626 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-05
Identity = 24/59 (40.68%), Postives = 42/59 (71.19%), Query Frame = 0

Query: 1   MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
           M+ EDW ++D RA SAIRL+L+ +V+ N+    TA+ +W +L+    +K+++N+L LK+
Sbjct: 47  MKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKK 105

BLAST of Bhi09G002626 vs. TrEMBL
Match: tr|A0A2I4F725|A0A2I4F725_9ROSI (uncharacterized protein LOC108996131 OS=Juglans regia OX=51240 GN=LOC108996131 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.4e-14
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 1  MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
          M DEDWE++DLRA SAIRL LAKNVL N+HGI TAKELWEKL++  Q K +SNR+ LKE
Sbjct: 33 MSDEDWEDLDLRAASAIRLCLAKNVLANIHGISTAKELWEKLEELYQTKGVSNRVYLKE 91

BLAST of Bhi09G002626 vs. TrEMBL
Match: tr|V4T614|V4T614_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10023471mg PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 43/57 (75.44%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 3  DEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
          DEDWEE+D RA SAIRL LAKNVL NV  I TAKELWEKL+   Q KSISNRL LKE
Sbjct: 30 DEDWEELDDRAASAIRLCLAKNVLANVGNIPTAKELWEKLEKLYQTKSISNRLYLKE 86

BLAST of Bhi09G002626 vs. TrEMBL
Match: tr|A0A2G2VS38|A0A2G2VS38_CAPBA (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_23490 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 0

Query: 3   DEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
           DE+WEE+D++A S IRL LAK VLTNV G+ T KELWEKL++  Q KSISNRL LKE
Sbjct: 268 DEEWEELDMKAESQIRLCLAKYVLTNVIGLSTTKELWEKLEELYQTKSISNRLYLKE 324

BLAST of Bhi09G002626 vs. TrEMBL
Match: tr|A0A2K3L7F8|A0A2K3L7F8_TRIPR (Cytochrome p450 OS=Trifolium pratense OX=57577 GN=L195_g030394 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-10
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 1   MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
           M  + WEE+DLRA SAIRL LAKNVL NV+ + +AKELWE+L+   QAK ISNRL LKE
Sbjct: 47  MXXDKWEELDLRAASAIRLCLAKNVLANVYNLSSAKELWERLERLYQAKDISNRLLLKE 105

BLAST of Bhi09G002626 vs. TrEMBL
Match: tr|A0A2P5B2T4|A0A2P5B2T4_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_276620 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-10
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 1  MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
          M DE+W+++D RA SAIR+ LAKNVL  V GI+TAKELW KL++  QAK +SNR+ LKE
Sbjct: 1  MSDEEWDDLDERAASAIRMCLAKNVLARVVGIMTAKELWRKLEELYQAKGVSNRVYLKE 59

BLAST of Bhi09G002626 vs. NCBI nr
Match: XP_018827443.1 (PREDICTED: uncharacterized protein LOC108996131 [Juglans regia])

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-13
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 1  MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
          M DEDWE++DLRA SAIRL LAKNVL N+HGI TAKELWEKL++  Q K +SNR+ LKE
Sbjct: 33 MSDEDWEDLDLRAASAIRLCLAKNVLANIHGISTAKELWEKLEELYQTKGVSNRVYLKE 91

BLAST of Bhi09G002626 vs. NCBI nr
Match: XP_025611318.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC112703916 [Arachis hypogaea])

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-13
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 1  MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLK--DQAKSISNRLCLKE 58
          M+DE+WEE+DLRATSAIRL LAKNVL NV G+ TAKELW+KL+   QAK ISNRL LK+
Sbjct: 1  MKDEEWEELDLRATSAIRLCLAKNVLANVQGMKTAKELWDKLERLHQAKGISNRLLLKD 59

BLAST of Bhi09G002626 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 44/59 (74.58%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 1   MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
           M  EDWEEMDLRA SAIR +LAKN+L NVH I TAKELWEKL+   QAK ISNRL LKE
Sbjct: 369 MSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALYQAKGISNRLYLKE 427

BLAST of Bhi09G002626 vs. NCBI nr
Match: XP_022876702.1 (nucleolar protein 14-like [Olea europaea var. sylvestris])

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 1   MRDEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
           M +EDWEE+DL+A S IRL LAKNVLTN+H I   KELWEKL++  Q KS+SNRL LKE
Sbjct: 53  MSNEDWEELDLKAASIIRLCLAKNVLTNIHRISATKELWEKLEELYQTKSLSNRLYLKE 111

BLAST of Bhi09G002626 vs. NCBI nr
Match: ESR55658.1 (hypothetical protein CICLE_v10023471mg, partial [Citrus clementina])

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-11
Identity = 43/57 (75.44%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 3  DEDWEEMDLRATSAIRLNLAKNVLTNVHGIITAKELWEKLKD--QAKSISNRLCLKE 58
          DEDWEE+D RA SAIRL LAKNVL NV  I TAKELWEKL+   Q KSISNRL LKE
Sbjct: 30 DEDWEELDDRAASAIRLCLAKNVLANVGNIPTAKELWEKLEKLYQTKSISNRLYLKE 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
sp|P10978|POLX_TOBAC1.7e-0540.68Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A2I4F725|A0A2I4F725_9ROSI9.4e-1471.19uncharacterized protein LOC108996131 OS=Juglans regia OX=51240 GN=LOC108996131 P... [more]
tr|V4T614|V4T614_9ROSI2.0e-1175.44Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10023... [more]
tr|A0A2G2VS38|A0A2G2VS38_CAPBA1.3e-1068.42Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_23490 PE=4 SV=1[more]
tr|A0A2K3L7F8|A0A2K3L7F8_TRIPR2.2e-1066.10Cytochrome p450 OS=Trifolium pratense OX=57577 GN=L195_g030394 PE=4 SV=1[more]
tr|A0A2P5B2T4|A0A2P5B2T4_PARAD2.8e-1062.71Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_276620 PE... [more]
Match NameE-valueIdentityDescription
XP_018827443.11.4e-1371.19PREDICTED: uncharacterized protein LOC108996131 [Juglans regia][more]
XP_025611318.14.1e-1372.88LOW QUALITY PROTEIN: uncharacterized protein LOC112703916 [Arachis hypogaea][more]
XP_022139673.11.2e-1274.58uncharacterized protein LOC111010521 [Momordica charantia][more]
XP_022876702.11.0e-1167.80nucleolar protein 14-like [Olea europaea var. sylvestris][more]
ESR55658.13.0e-1175.44hypothetical protein CICLE_v10023471mg, partial [Citrus clementina][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0043531 ADP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008113 peptide-methionine (S)-S-oxide reductase activity
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M002626Bhi09M002626mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 6..56
e-value: 2.5E-6
score: 27.1

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi09G002626Cucurbita maxima (Rimu)cmawgoB0600
Bhi09G002626Wax gourdwgowgoB096
Bhi09G002626Wax gourdwgowgoB116
Bhi09G002626Cucumber (Gy14) v1cgywgoB159
Bhi09G002626Cucumber (Gy14) v1cgywgoB706
Bhi09G002626Cucumber (Gy14) v1cgywgoB789
Bhi09G002626Cucumber (Gy14) v2cgybwgoB190
Bhi09G002626Cucumber (Gy14) v2cgybwgoB398
Bhi09G002626Cucurbita maxima (Rimu)cmawgoB0035
Bhi09G002626Cucurbita maxima (Rimu)cmawgoB0228
Bhi09G002626Cucurbita maxima (Rimu)cmawgoB0961
Bhi09G002626Cucurbita moschata (Rifu)cmowgoB0029
Bhi09G002626Cucurbita moschata (Rifu)cmowgoB0222
Bhi09G002626Cucurbita moschata (Rifu)cmowgoB0598
Bhi09G002626Cucurbita moschata (Rifu)cmowgoB0960
Bhi09G002626Cucurbita pepo (Zucchini)cpewgoB0157
Bhi09G002626Cucurbita pepo (Zucchini)cpewgoB0725
Bhi09G002626Cucurbita pepo (Zucchini)cpewgoB0997
Bhi09G002626Cucurbita pepo (Zucchini)cpewgoB1062
Bhi09G002626Wild cucumber (PI 183967)cpiwgoB198
Bhi09G002626Wild cucumber (PI 183967)cpiwgoB421
Bhi09G002626Wild cucumber (PI 183967)cpiwgoB656
Bhi09G002626Cucumber (Chinese Long) v3cucwgoB204
Bhi09G002626Cucumber (Chinese Long) v3cucwgoB426
Bhi09G002626Cucumber (Chinese Long) v3cucwgoB669
Bhi09G002626Cucumber (Chinese Long) v2cuwgoB198
Bhi09G002626Cucumber (Chinese Long) v2cuwgoB419
Bhi09G002626Cucumber (Chinese Long) v2cuwgoB648
Bhi09G002626Bottle gourd (USVL1VR-Ls)lsiwgoB199
Bhi09G002626Bottle gourd (USVL1VR-Ls)lsiwgoB394
Bhi09G002626Bottle gourd (USVL1VR-Ls)lsiwgoB627
Bhi09G002626Melon (DHL92) v3.6.1medwgoB370
Bhi09G002626Melon (DHL92) v3.6.1medwgoB601
Bhi09G002626Melon (DHL92) v3.6.1medwgoB681
Bhi09G002626Melon (DHL92) v3.5.1mewgoB369
Bhi09G002626Melon (DHL92) v3.5.1mewgoB595
Bhi09G002626Melon (DHL92) v3.5.1mewgoB672
Bhi09G002626Watermelon (Charleston Gray)wcgwgoB475
Bhi09G002626Watermelon (Charleston Gray)wcgwgoB656
Bhi09G002626Watermelon (97103) v2wgowmbB575
Bhi09G002626Watermelon (97103) v2wgowmbB602
Bhi09G002626Watermelon (97103) v1wgowmB601
Bhi09G002626Watermelon (97103) v1wgowmB619
Bhi09G002626Silver-seed gourdcarwgoB0236
Bhi09G002626Silver-seed gourdcarwgoB0406
Bhi09G002626Silver-seed gourdcarwgoB0554
Bhi09G002626Silver-seed gourdcarwgoB0905